Wall clock time and date at job start Mon Mar 30 2020 01:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.06083 * 2 1 4 4 C 1.54270 * 110.03488 * 238.57930 * 2 1 3 5 5 C 1.54881 * 104.19882 * 264.33101 * 4 2 1 6 6 C 1.54890 * 102.74666 * 322.05398 * 5 4 2 7 7 C 1.53878 * 110.03175 * 121.41708 * 2 1 3 8 8 H 1.09003 * 110.03349 * 238.61460 * 7 2 1 9 9 N 1.46501 * 110.02878 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99878 * 204.99979 * 9 7 2 11 11 O 1.21285 * 119.99917 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00140 * 180.02562 * 10 9 7 13 13 H 1.08999 * 109.46974 * 40.00265 * 12 10 9 14 14 N 1.46903 * 109.46981 * 159.99818 * 12 10 9 15 15 C 1.52994 * 109.47164 * 280.00017 * 12 10 9 16 16 C 1.53001 * 109.47367 * 175.00033 * 15 12 10 17 17 C 1.50697 * 109.46995 * 180.02562 * 16 15 12 18 18 H 1.07991 * 120.00449 * 359.72153 * 17 16 15 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00035 * 179.72339 * 19 17 16 21 21 Si 1.86803 * 119.99853 * 359.72191 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 H 1.08994 * 109.47166 * 298.59027 * 1 2 3 26 26 H 1.09000 * 109.46514 * 58.58367 * 1 2 3 27 27 H 1.08998 * 109.47624 * 178.58104 * 1 2 3 28 28 H 1.09000 * 109.47148 * 181.41575 * 3 2 1 29 29 H 1.09003 * 109.46585 * 301.41282 * 3 2 1 30 30 H 1.09001 * 109.46618 * 61.41474 * 3 2 1 31 31 H 1.09007 * 110.48237 * 23.00717 * 4 2 1 32 32 H 1.09001 * 110.48717 * 145.51587 * 4 2 1 33 33 H 1.09002 * 110.75744 * 80.36850 * 5 4 2 34 34 H 1.08996 * 110.75603 * 203.55658 * 5 4 2 35 35 H 1.09000 * 110.48734 * 279.26331 * 6 5 4 36 36 H 1.09002 * 110.48651 * 156.62469 * 6 5 4 37 37 H 0.96997 * 119.99984 * 25.00302 * 9 7 2 38 38 H 1.00899 * 110.99860 * 60.00183 * 14 12 10 39 39 H 1.00897 * 110.99411 * 183.95158 * 14 12 10 40 40 H 1.08998 * 109.47353 * 54.99812 * 15 12 10 41 41 H 1.09006 * 109.47395 * 295.00067 * 15 12 10 42 42 H 1.08998 * 109.47065 * 59.99602 * 16 15 12 43 43 H 1.09001 * 109.46892 * 299.99866 * 16 15 12 44 44 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 2.3280 -2.1902 -0.7191 6 6 2.8874 -1.9407 0.7035 7 6 2.0570 -0.7536 1.2337 8 1 2.6860 -0.0952 1.8329 9 7 0.9358 -1.2445 2.0387 10 6 1.1011 -1.4715 3.3569 11 8 2.1782 -1.2698 3.8766 12 6 -0.0521 -1.9771 4.1849 13 1 -0.6097 -2.7207 3.6154 14 7 0.4614 -2.5887 5.4179 15 6 -0.9750 -0.8098 4.5405 16 6 -2.2088 -1.3401 5.2736 17 6 -3.1180 -0.1904 5.6233 18 1 -2.8413 0.8182 5.3541 19 6 -4.3009 -0.4255 6.2917 20 7 -5.0918 0.5784 6.6018 21 14 -4.7800 -2.1702 6.7567 22 1 -4.2437 -2.4882 8.1045 23 1 -6.2600 -2.2897 6.7720 24 1 -4.2170 -3.1196 5.7634 25 1 -0.3633 0.4918 0.9023 26 1 -0.3632 0.5357 -0.8770 27 1 -0.3634 -1.0273 -0.0254 28 1 3.1444 1.4261 -0.0254 29 1 1.6762 1.9621 -0.8771 30 1 1.7175 1.9471 0.9024 31 1 1.3061 -0.7697 -2.0255 32 1 2.9799 -0.2988 -1.5980 33 1 1.4030 -2.7652 -0.6751 34 1 3.0650 -2.6943 -1.3441 35 1 3.9439 -1.6767 0.6572 36 1 2.7400 -2.8197 1.3310 37 1 0.0745 -1.4063 1.6230 38 1 0.9825 -1.9190 5.9638 39 1 -0.2875 -2.9927 5.9601 40 1 -1.2853 -0.3009 3.6280 41 1 -0.4431 -0.1092 5.1843 42 1 -1.8985 -1.8491 6.1861 43 1 -2.7407 -2.0407 4.6298 44 1 -5.9241 0.4128 7.0716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:09 Heat of formation + Delta-G solvation = -85.819816 kcal Electronic energy + Delta-G solvation = -21394.939745 eV Core-core repulsion = 18344.921822 eV Total energy + Delta-G solvation = -3050.017923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47554 -39.64210 -37.08352 -34.81710 -34.64744 -33.15508 -32.08516 -29.44751 -28.51743 -27.74098 -25.76718 -24.81542 -22.42078 -21.64048 -20.88554 -19.82940 -19.05916 -18.28855 -17.52477 -16.46661 -16.36807 -16.05958 -15.74688 -15.67091 -15.12942 -14.80237 -14.60972 -14.48895 -14.30326 -14.08721 -13.92121 -13.57721 -13.12499 -13.02256 -12.72519 -12.66617 -12.40827 -12.07496 -12.03232 -11.92206 -11.83538 -11.67294 -11.54057 -11.43955 -11.41459 -11.37211 -10.78469 -10.72661 -9.99625 -9.65528 -8.30239 -6.35809 1.38400 1.39556 1.51072 1.64025 2.19208 2.35954 3.05440 3.45460 3.63126 3.73352 3.79808 3.89575 4.08649 4.18090 4.28032 4.36859 4.38254 4.41546 4.55688 4.62174 4.72197 4.74475 4.79207 4.87931 4.93185 4.94772 5.00586 5.05450 5.10312 5.22015 5.28914 5.33830 5.35565 5.42316 5.45640 5.50114 5.61887 5.64812 6.05739 6.24755 6.48169 6.57418 6.72565 7.27952 7.29068 8.86609 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.004315 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.239484 B = 6487.851339 C = 6970.937888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.143 3.857 8 H 0.064 0.936 9 N -0.713 5.713 10 C 0.522 3.478 11 O -0.574 6.574 12 C 0.080 3.920 13 H 0.117 0.883 14 N -0.830 5.830 15 C -0.117 4.117 16 C -0.006 4.006 17 C -0.535 4.535 18 H 0.026 0.974 19 C 0.003 3.997 20 N -0.953 5.953 21 Si 0.954 3.046 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.237 1.237 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.411 0.589 38 H 0.344 0.656 39 H 0.354 0.646 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.023 0.977 43 H 0.032 0.968 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.348 -6.467 -17.734 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.170 4.170 7 C 0.039 3.961 8 H 0.082 0.918 9 N -0.367 5.367 10 C 0.308 3.692 11 O -0.453 6.453 12 C -0.035 4.035 13 H 0.135 0.865 14 N -0.361 5.361 15 C -0.157 4.157 16 C -0.043 4.043 17 C -0.573 4.573 18 H 0.044 0.956 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.776 3.224 22 H -0.193 1.193 23 H -0.213 1.213 24 H -0.160 1.160 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.251 0.749 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.368 -6.765 -17.783 23.842 hybrid contribution -1.529 0.693 1.160 2.040 sum 12.839 -6.073 -16.623 21.864 Atomic orbital electron populations 1.21923 0.93869 1.02305 1.02481 1.21423 0.96257 0.95649 0.93859 1.21909 1.01202 0.94650 1.01904 1.22481 1.01749 0.94435 0.95899 1.22478 1.01227 0.97190 0.94659 1.22728 0.99579 0.97258 0.97466 1.21730 0.87507 0.95348 0.91555 0.91771 1.46306 1.15634 1.67007 1.07782 1.20788 0.89128 0.76308 0.82935 1.90617 1.28885 1.53015 1.72778 1.21446 0.92100 0.96700 0.93297 0.86500 1.58751 1.29758 1.38795 1.08844 1.22007 0.96109 0.96970 1.00634 1.19499 0.93152 0.95651 0.96007 1.21428 1.04757 0.94020 1.37060 0.95595 1.26071 0.96123 1.02047 0.95092 1.70081 1.13150 1.33911 1.42187 0.85612 0.77263 0.79616 0.79869 1.19332 1.21326 1.16009 0.93462 0.90675 0.91410 0.91961 0.90873 0.94147 0.89916 0.90417 0.91319 0.90188 0.90721 0.92926 0.74905 0.84248 0.83071 0.91812 0.94154 0.95894 0.94949 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 7.03 71.98 0.51 -1.94 16 2 C -0.07 -1.19 0.94 -51.46 -0.05 -1.24 16 3 C -0.14 -2.32 8.16 71.98 0.59 -1.73 16 4 C -0.11 -1.36 5.90 31.67 0.19 -1.17 16 5 C -0.12 -1.64 6.91 31.88 0.22 -1.42 16 6 C -0.13 -2.59 6.54 31.67 0.21 -2.38 16 7 C 0.14 3.20 2.88 45.72 0.13 3.33 16 8 H 0.06 1.77 7.09 -2.39 -0.02 1.75 16 9 N -0.71 -17.52 4.46 -439.09 -1.96 -19.48 16 10 C 0.52 16.55 7.08 87.66 0.62 17.17 16 11 O -0.57 -22.20 15.90 -3.05 -0.05 -22.25 16 12 C 0.08 2.47 3.21 44.17 0.14 2.61 16 13 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 14 N -0.83 -25.93 8.94 -171.81 -1.54 -27.46 16 15 C -0.12 -4.37 4.78 30.59 0.15 -4.22 16 16 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 17 C -0.53 -30.06 9.66 25.60 0.25 -29.82 16 18 H 0.03 1.63 7.99 -2.92 -0.02 1.61 16 19 C 0.00 0.20 5.47 84.66 0.46 0.66 16 20 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 21 Si 0.95 42.53 27.47 68.60 1.88 44.42 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 25 H 0.05 0.97 7.72 -2.39 -0.02 0.95 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 0.98 6.93 -2.39 -0.02 0.96 16 28 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.86 7.84 -2.38 -0.02 0.84 16 32 H 0.08 0.87 7.83 -2.39 -0.02 0.85 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.23 8.04 -2.39 -0.02 1.21 16 37 H 0.41 8.49 5.82 -92.71 -0.54 7.95 16 38 H 0.34 11.34 8.58 -89.69 -0.77 10.57 16 39 H 0.35 10.34 7.55 -89.70 -0.68 9.67 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.02 0.95 6.31 -2.39 -0.02 0.93 16 43 H 0.03 1.33 7.19 -2.39 -0.02 1.31 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.56 342.45 1.11 -68.44 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -1.05 Total: 35.57 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.52 Total: -20.29 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -3.20 Total: -105.89 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.42 kcal Total: -69.56 1.11 -68.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.375 kcal (2) G-P(sol) polarization free energy of solvation -69.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds