Wall clock time and date at job start Mon Mar 30 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.02009 * 2 1 4 4 C 1.54266 * 110.03201 * 238.60544 * 2 1 3 5 5 C 1.54966 * 104.16247 * 217.13569 * 4 2 1 6 6 C 1.54893 * 102.77317 * 37.88972 * 5 4 2 7 7 C 1.53877 * 110.03440 * 121.39014 * 2 1 3 8 8 H 1.09003 * 110.02851 * 359.97438 * 7 2 1 9 9 N 1.46496 * 110.03259 * 238.61996 * 7 2 1 10 10 C 1.34775 * 119.99863 * 155.00000 * 9 7 2 11 11 O 1.21275 * 120.00551 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99853 * 179.97438 * 10 9 7 13 13 H 1.09002 * 109.47122 * 40.00288 * 12 10 9 14 14 N 1.46900 * 109.47148 * 159.99658 * 12 10 9 15 15 C 1.52994 * 109.47363 * 279.99951 * 12 10 9 16 16 C 1.53001 * 109.47390 * 175.00033 * 15 12 10 17 17 C 1.50703 * 109.47330 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99812 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99826 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99760 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00377 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47131 * 89.99412 * 21 19 17 23 23 H 1.48497 * 109.47438 * 209.99727 * 21 19 17 24 24 H 1.48504 * 109.46822 * 329.99808 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.29995 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.30186 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.30167 * 1 2 3 28 28 H 1.08997 * 109.47314 * 60.69909 * 3 2 1 29 29 H 1.08996 * 109.47276 * 180.70160 * 3 2 1 30 30 H 1.09007 * 109.46408 * 300.69875 * 3 2 1 31 31 H 1.09003 * 110.48923 * 335.78349 * 4 2 1 32 32 H 1.09000 * 110.48702 * 98.42889 * 4 2 1 33 33 H 1.09000 * 110.72119 * 279.57725 * 5 4 2 34 34 H 1.09004 * 110.92277 * 156.29255 * 5 4 2 35 35 H 1.09002 * 110.48236 * 203.40453 * 6 5 4 36 36 H 1.08998 * 110.60043 * 80.81743 * 6 5 4 37 37 H 0.96996 * 120.00229 * 334.99110 * 9 7 2 38 38 H 1.00895 * 111.00118 * 296.04936 * 14 12 10 39 39 H 1.00903 * 110.99759 * 60.00430 * 14 12 10 40 40 H 1.08996 * 109.47297 * 294.99852 * 15 12 10 41 41 H 1.09006 * 109.47408 * 54.99847 * 15 12 10 42 42 H 1.08999 * 109.47156 * 299.99867 * 16 15 12 43 43 H 1.08999 * 109.46869 * 59.99963 * 16 15 12 44 44 H 0.97002 * 119.99939 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3137 -1.5011 -0.7184 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1180 1.8332 9 7 2.9024 0.1324 2.0390 10 6 3.0587 -0.1004 3.3572 11 8 2.4993 -1.0424 3.8773 12 6 3.9287 0.8101 4.1851 13 1 3.7722 1.8432 3.8748 14 7 3.5768 0.6665 5.6041 15 6 5.3978 0.4339 3.9834 16 6 6.2870 1.4347 4.7242 17 6 7.7341 1.0638 4.5260 18 1 7.9937 0.2008 3.9309 19 6 8.7266 1.8268 5.1037 20 7 9.9895 1.5028 4.9311 21 14 8.2776 3.3199 6.1325 22 1 8.1099 2.9117 7.5504 23 1 9.3592 4.3326 6.0335 24 1 7.0068 3.9022 5.6314 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 0.5030 0.8962 27 1 -0.3634 -1.0276 -0.0125 28 1 1.7056 1.9511 0.8961 29 1 3.1436 1.4272 -0.0126 30 1 1.6851 1.9585 -0.8837 31 1 1.3142 -1.4654 -1.5972 32 1 2.3297 -0.0528 -2.0255 33 1 4.1710 -0.8294 -0.6748 34 1 3.5356 -2.3685 -1.3402 35 1 3.7637 -2.1031 1.3319 36 1 2.2777 -2.8428 0.6607 37 1 3.3496 0.8860 1.6232 38 1 2.6299 0.9705 5.7744 39 1 3.7133 -0.2832 5.9162 40 1 5.5736 -0.5678 4.3756 41 1 5.6355 0.4545 2.9198 42 1 6.1113 2.4365 4.3321 43 1 6.0493 1.4140 5.7878 44 1 10.6878 2.0394 5.3378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424119090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:12 Heat of formation + Delta-G solvation = -63.962705 kcal Electronic energy + Delta-G solvation = -21385.961209 eV Core-core repulsion = 18336.891082 eV Total energy + Delta-G solvation = -3049.070127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52222 -38.68605 -35.28760 -33.66946 -32.74571 -32.45524 -30.47266 -28.46274 -27.65145 -26.40510 -24.71689 -23.28930 -21.11084 -20.26412 -19.72486 -19.02008 -17.20961 -16.72668 -16.49413 -15.64810 -15.39802 -14.94240 -14.28525 -14.12014 -13.88228 -13.82379 -13.60692 -13.34907 -13.12676 -12.60192 -12.49093 -12.28856 -12.06046 -11.77894 -11.55857 -11.34960 -11.07878 -10.97052 -10.85708 -10.82715 -10.78680 -10.72990 -10.29626 -9.98824 -9.70077 -9.56664 -9.10165 -8.97512 -8.49457 -8.35734 -5.98514 -3.95988 2.76942 3.30171 3.38248 3.44641 3.50106 4.17908 4.34668 4.52182 4.54216 4.81054 4.96579 5.04855 5.06973 5.09857 5.11606 5.33797 5.36189 5.40131 5.41869 5.48695 5.51813 5.58723 5.68790 5.71554 5.74432 5.76465 5.91772 5.94903 6.01278 6.12890 6.16018 6.31285 6.49411 6.60297 6.89431 7.28763 7.39974 7.55913 7.62476 7.69131 7.87645 8.33518 8.59201 9.06268 9.64620 11.15018 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.004278 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.015020 B = 6544.101738 C = 6879.043007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.134 4.134 7 C 0.147 3.853 8 H 0.087 0.913 9 N -0.724 5.724 10 C 0.482 3.518 11 O -0.554 6.554 12 C 0.074 3.926 13 H 0.096 0.904 14 N -0.811 5.811 15 C -0.086 4.086 16 C -0.004 4.004 17 C -0.521 4.521 18 H 0.069 0.931 19 C 0.065 3.935 20 N -0.907 5.907 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.265 1.265 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.403 0.597 38 H 0.334 0.666 39 H 0.349 0.651 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.012 0.988 43 H 0.029 0.971 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.496 -1.752 -12.162 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.173 4.173 7 C 0.041 3.959 8 H 0.106 0.894 9 N -0.379 5.379 10 C 0.268 3.732 11 O -0.432 6.432 12 C -0.042 4.042 13 H 0.114 0.886 14 N -0.339 5.339 15 C -0.125 4.125 16 C -0.042 4.042 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.546 5.546 21 Si 0.710 3.290 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.189 1.189 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.146 0.854 39 H 0.164 0.836 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.121 -1.836 -11.580 22.429 hybrid contribution -0.589 0.389 -0.052 0.707 sum -19.710 -1.447 -11.631 22.931 Atomic orbital electron populations 1.21895 0.93864 1.01913 1.01875 1.21432 0.95900 0.95763 0.94552 1.21903 1.01121 0.95026 1.02312 1.22511 0.97458 0.98815 0.96446 1.22522 0.97671 1.00022 0.96086 1.22769 1.00399 0.97613 0.96527 1.21605 0.93291 0.89794 0.91179 0.89450 1.46542 1.50301 1.32103 1.08911 1.22598 0.81375 0.86468 0.82780 1.90640 1.49082 1.31269 1.72190 1.21848 0.96610 0.98135 0.87588 0.88625 1.59034 1.29827 1.30348 1.14720 1.21452 0.88950 1.01312 1.00767 1.19485 0.94499 0.93727 0.96469 1.21183 0.89099 1.13346 1.32238 0.91333 1.25014 0.94836 0.97590 0.96075 1.69929 0.99353 1.39937 1.45392 0.86731 0.78166 0.82949 0.81124 1.20281 1.21728 1.18920 0.92349 0.92586 0.92410 0.92007 0.92021 0.92065 0.91365 0.91311 0.91253 0.91482 0.90917 0.91118 0.75885 0.85397 0.83642 0.92274 0.92277 0.96946 0.95245 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.16 37.16 0.30 -0.75 16 2 C -0.08 -0.64 0.94 -153.39 -0.14 -0.79 16 3 C -0.15 -1.16 7.03 37.16 0.26 -0.90 16 4 C -0.11 -0.90 5.91 -25.03 -0.15 -1.04 16 5 C -0.13 -1.15 6.91 -24.69 -0.17 -1.32 16 6 C -0.13 -1.49 6.54 -25.07 -0.16 -1.65 16 7 C 0.15 1.62 2.88 -66.82 -0.19 1.43 16 8 H 0.09 1.11 7.09 -51.93 -0.37 0.74 16 9 N -0.72 -8.80 4.48 -52.72 -0.24 -9.04 16 10 C 0.48 7.32 7.06 -10.98 -0.08 7.25 16 11 O -0.55 -9.95 15.90 5.56 0.09 -9.86 16 12 C 0.07 1.18 3.15 -68.87 -0.22 0.96 16 13 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 14 N -0.81 -12.87 8.44 -5.65 -0.05 -12.92 16 15 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 16 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 17 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 18 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 21 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 28 H 0.06 0.51 7.76 -51.93 -0.40 0.11 16 29 H 0.06 0.50 6.89 -51.93 -0.36 0.14 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 32 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.40 4.32 5.81 -40.82 -0.24 4.08 16 38 H 0.33 4.58 9.06 -39.29 -0.36 4.22 16 39 H 0.35 5.71 8.58 -39.29 -0.34 5.37 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 43 H 0.03 0.72 7.18 -51.93 -0.37 0.34 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -32.43 344.42 -7.97 -40.40 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.85 Total: 8.52 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.22 Total: -12.25 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.49 Total: -49.44 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.43 -7.97 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.564 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds