Wall clock time and date at job start Mon Mar 30 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.02009 * 2 1 4 4 C 1.54266 * 110.03201 * 238.60544 * 2 1 3 5 5 C 1.54966 * 104.16247 * 217.13569 * 4 2 1 6 6 C 1.54893 * 102.77317 * 37.88972 * 5 4 2 7 7 C 1.53877 * 110.03440 * 121.39014 * 2 1 3 8 8 H 1.09003 * 110.02851 * 359.97438 * 7 2 1 9 9 N 1.46496 * 110.03259 * 238.61996 * 7 2 1 10 10 C 1.34775 * 119.99863 * 155.00000 * 9 7 2 11 11 O 1.21275 * 120.00551 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99853 * 179.97438 * 10 9 7 13 13 H 1.09002 * 109.47122 * 40.00288 * 12 10 9 14 14 N 1.46900 * 109.47148 * 159.99658 * 12 10 9 15 15 C 1.52994 * 109.47363 * 279.99951 * 12 10 9 16 16 C 1.53001 * 109.47390 * 175.00033 * 15 12 10 17 17 C 1.50703 * 109.47330 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99812 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99826 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99760 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00377 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47131 * 89.99412 * 21 19 17 23 23 H 1.48497 * 109.47438 * 209.99727 * 21 19 17 24 24 H 1.48504 * 109.46822 * 329.99808 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.29995 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.30186 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.30167 * 1 2 3 28 28 H 1.08997 * 109.47314 * 60.69909 * 3 2 1 29 29 H 1.08996 * 109.47276 * 180.70160 * 3 2 1 30 30 H 1.09007 * 109.46408 * 300.69875 * 3 2 1 31 31 H 1.09003 * 110.48923 * 335.78349 * 4 2 1 32 32 H 1.09000 * 110.48702 * 98.42889 * 4 2 1 33 33 H 1.09000 * 110.72119 * 279.57725 * 5 4 2 34 34 H 1.09004 * 110.92277 * 156.29255 * 5 4 2 35 35 H 1.09002 * 110.48236 * 203.40453 * 6 5 4 36 36 H 1.08998 * 110.60043 * 80.81743 * 6 5 4 37 37 H 0.96996 * 120.00229 * 334.99110 * 9 7 2 38 38 H 1.00895 * 111.00118 * 296.04936 * 14 12 10 39 39 H 1.00903 * 110.99759 * 60.00430 * 14 12 10 40 40 H 1.08996 * 109.47297 * 294.99852 * 15 12 10 41 41 H 1.09006 * 109.47408 * 54.99847 * 15 12 10 42 42 H 1.08999 * 109.47156 * 299.99867 * 16 15 12 43 43 H 1.08999 * 109.46869 * 59.99963 * 16 15 12 44 44 H 0.97002 * 119.99939 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3137 -1.5011 -0.7184 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1180 1.8332 9 7 2.9024 0.1324 2.0390 10 6 3.0587 -0.1004 3.3572 11 8 2.4993 -1.0424 3.8773 12 6 3.9287 0.8101 4.1851 13 1 3.7722 1.8432 3.8748 14 7 3.5768 0.6665 5.6041 15 6 5.3978 0.4339 3.9834 16 6 6.2870 1.4347 4.7242 17 6 7.7341 1.0638 4.5260 18 1 7.9937 0.2008 3.9309 19 6 8.7266 1.8268 5.1037 20 7 9.9895 1.5028 4.9311 21 14 8.2776 3.3199 6.1325 22 1 8.1099 2.9117 7.5504 23 1 9.3592 4.3326 6.0335 24 1 7.0068 3.9022 5.6314 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 0.5030 0.8962 27 1 -0.3634 -1.0276 -0.0125 28 1 1.7056 1.9511 0.8961 29 1 3.1436 1.4272 -0.0126 30 1 1.6851 1.9585 -0.8837 31 1 1.3142 -1.4654 -1.5972 32 1 2.3297 -0.0528 -2.0255 33 1 4.1710 -0.8294 -0.6748 34 1 3.5356 -2.3685 -1.3402 35 1 3.7637 -2.1031 1.3319 36 1 2.2777 -2.8428 0.6607 37 1 3.3496 0.8860 1.6232 38 1 2.6299 0.9705 5.7744 39 1 3.7133 -0.2832 5.9162 40 1 5.5736 -0.5678 4.3756 41 1 5.6355 0.4545 2.9198 42 1 6.1113 2.4365 4.3321 43 1 6.0493 1.4140 5.7878 44 1 10.6878 2.0394 5.3378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:11 Heat of formation + Delta-G solvation = -86.535294 kcal Electronic energy + Delta-G solvation = -21386.940030 eV Core-core repulsion = 18336.891082 eV Total energy + Delta-G solvation = -3050.048948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54428 -39.70913 -36.81673 -34.79296 -34.70171 -33.18791 -32.28611 -29.40714 -28.51810 -27.78063 -25.70148 -24.68640 -22.34700 -21.72382 -20.88758 -19.86290 -18.92202 -18.17914 -17.61679 -16.85784 -16.46855 -16.26027 -15.85863 -15.41571 -15.06219 -14.79818 -14.69677 -14.50187 -14.16452 -14.01184 -13.84891 -13.55112 -13.06699 -12.83216 -12.75921 -12.51687 -12.45448 -12.07584 -11.93897 -11.87200 -11.79358 -11.61557 -11.56348 -11.46468 -11.40263 -11.28436 -11.09991 -10.71078 -10.03514 -9.65660 -8.24894 -6.28248 1.41680 1.42962 1.53157 1.55770 2.23313 2.41576 3.11791 3.42393 3.56435 3.60691 3.82993 3.88556 4.07616 4.25443 4.26331 4.33747 4.35876 4.39354 4.57715 4.67880 4.69881 4.79543 4.83175 4.86663 4.90993 4.98775 5.03043 5.07928 5.13667 5.17050 5.27206 5.33372 5.38734 5.47414 5.49535 5.60249 5.65153 5.72644 6.06523 6.32478 6.46171 6.54695 6.80157 7.18497 7.36330 8.92072 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.004278 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.015020 B = 6544.101738 C = 6879.043007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.123 4.123 6 C -0.137 4.137 7 C 0.143 3.857 8 H 0.071 0.929 9 N -0.710 5.710 10 C 0.484 3.516 11 O -0.584 6.584 12 C 0.083 3.917 13 H 0.119 0.881 14 N -0.818 5.818 15 C -0.078 4.078 16 C 0.003 3.997 17 C -0.532 4.532 18 H 0.027 0.973 19 C 0.003 3.997 20 N -0.955 5.955 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.241 1.241 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.348 0.652 39 H 0.345 0.655 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.027 0.973 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 0.062 -13.041 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.160 4.160 6 C -0.175 4.175 7 C 0.038 3.962 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.270 3.730 11 O -0.465 6.465 12 C -0.032 4.032 13 H 0.136 0.864 14 N -0.347 5.347 15 C -0.116 4.116 16 C -0.034 4.034 17 C -0.570 4.570 18 H 0.045 0.955 19 C -0.193 4.193 20 N -0.596 5.596 21 Si 0.778 3.222 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.164 1.164 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.215 -0.008 -12.497 24.622 hybrid contribution 0.098 -0.284 0.167 0.343 sum -21.117 -0.292 -12.330 24.455 Atomic orbital electron populations 1.21884 0.92985 1.02185 1.02300 1.21417 0.96528 0.95880 0.93276 1.21924 1.01008 0.94572 1.03001 1.22501 0.96737 0.99027 0.96283 1.22506 0.98220 1.00443 0.94847 1.22759 0.99304 0.98051 0.97426 1.21734 0.92510 0.90047 0.91875 0.91124 1.46479 1.49682 1.32185 1.08038 1.22396 0.81179 0.85845 0.83613 1.90630 1.50497 1.32386 1.72953 1.21664 0.94109 0.99358 0.88106 0.86372 1.59022 1.30998 1.30120 1.14554 1.21239 0.90975 0.99074 1.00336 1.19368 0.92011 0.95192 0.96873 1.21556 0.92090 1.12002 1.31325 0.95456 1.26007 0.94538 1.01222 0.97533 1.70084 1.00756 1.41764 1.47011 0.85600 0.78865 0.78664 0.79109 1.19773 1.21224 1.16442 0.90737 0.93290 0.92323 0.92308 0.92216 0.90437 0.90328 0.89905 0.91928 0.90605 0.93862 0.90665 0.74810 0.83831 0.84148 0.94350 0.91799 0.95728 0.95460 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.16 71.98 0.59 -1.17 16 2 C -0.07 -1.04 0.94 -51.46 -0.05 -1.09 16 3 C -0.15 -1.95 7.03 71.98 0.51 -1.45 16 4 C -0.11 -1.40 5.91 31.70 0.19 -1.22 16 5 C -0.12 -2.08 6.91 31.91 0.22 -1.86 16 6 C -0.14 -3.00 6.54 31.67 0.21 -2.79 16 7 C 0.14 3.05 2.88 45.72 0.13 3.18 16 8 H 0.07 1.77 7.09 -2.39 -0.02 1.75 16 9 N -0.71 -16.54 4.48 -439.11 -1.97 -18.51 16 10 C 0.48 14.37 7.06 87.66 0.62 14.99 16 11 O -0.58 -20.98 15.90 -3.01 -0.05 -21.03 16 12 C 0.08 2.53 3.15 44.17 0.14 2.67 16 13 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 14 N -0.82 -24.83 8.44 -171.80 -1.45 -26.28 16 15 C -0.08 -3.00 4.78 30.59 0.15 -2.86 16 16 C 0.00 0.14 3.93 29.85 0.12 0.26 16 17 C -0.53 -30.96 9.66 25.60 0.25 -30.72 16 18 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 19 C 0.00 0.19 5.47 84.65 0.46 0.65 16 20 N -0.96 -60.76 13.96 21.45 0.30 -60.46 16 21 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.75 8.13 -2.38 -0.02 0.73 16 28 H 0.06 0.82 7.76 -2.39 -0.02 0.80 16 29 H 0.06 0.82 6.89 -2.39 -0.02 0.80 16 30 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.08 0.89 7.84 -2.39 -0.02 0.87 16 32 H 0.08 0.90 7.84 -2.39 -0.02 0.88 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.04 1.19 8.04 -2.39 -0.02 1.17 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.41 8.14 5.81 -92.71 -0.54 7.60 16 38 H 0.35 8.90 9.06 -89.70 -0.81 8.09 16 39 H 0.35 11.11 8.58 -89.69 -0.77 10.34 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 43 H 0.03 1.28 7.18 -2.39 -0.02 1.26 16 44 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -70.92 344.42 1.06 -69.86 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -1.19 Total: 30.97 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 3.52 Total: -21.40 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.12 Total: -105.25 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -70.92 1.06 -69.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.672 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds