Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.05489 * 2 1 4 4 N 1.46505 * 109.47256 * 58.57796 * 3 2 1 5 5 C 1.34776 * 119.99820 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00100 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00073 * 180.02562 * 5 4 3 8 8 H 1.09008 * 109.47261 * 319.99977 * 7 5 4 9 9 N 1.46900 * 109.47252 * 199.99979 * 7 5 4 10 10 C 1.53001 * 109.47433 * 79.99870 * 7 5 4 11 11 C 1.52996 * 109.47278 * 185.00250 * 10 7 5 12 12 C 1.50699 * 109.47125 * 179.97438 * 11 10 7 13 13 H 1.08004 * 119.99945 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00069 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99597 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99954 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47108 * 89.99775 * 16 14 12 18 18 H 1.48503 * 109.46948 * 210.00049 * 16 14 12 19 19 H 1.48497 * 109.47004 * 329.99612 * 16 14 12 20 20 C 1.53869 * 110.03587 * 238.57860 * 2 1 3 21 21 C 1.54270 * 106.63967 * 240.69205 * 20 2 1 22 22 C 1.55005 * 104.13720 * 23.62421 * 21 20 2 23 23 C 1.54268 * 110.02861 * 121.40888 * 2 1 3 24 24 H 1.08998 * 109.47417 * 181.41792 * 1 2 3 25 25 H 1.08995 * 109.47912 * 301.42187 * 1 2 3 26 26 H 1.09003 * 109.46563 * 61.42261 * 1 2 3 27 27 H 1.09003 * 109.47022 * 178.58091 * 3 2 1 28 28 H 1.08997 * 109.46645 * 298.57674 * 3 2 1 29 29 H 0.96991 * 119.99675 * 0.02562 * 4 3 2 30 30 H 1.00897 * 111.00101 * 299.99941 * 9 7 5 31 31 H 1.00899 * 110.99583 * 63.95414 * 9 7 5 32 32 H 1.09007 * 109.46796 * 305.00111 * 10 7 5 33 33 H 1.08998 * 109.46884 * 65.00009 * 10 7 5 34 34 H 1.08990 * 109.47126 * 300.00008 * 11 10 7 35 35 H 1.09005 * 109.47060 * 59.99884 * 11 10 7 36 36 H 0.96999 * 119.99578 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.03268 * 0.02562 * 20 2 1 38 38 H 1.08995 * 110.03391 * 121.38598 * 20 2 1 39 39 H 1.08998 * 110.48170 * 142.31277 * 21 20 2 40 40 H 1.08998 * 110.48753 * 264.95665 * 21 20 2 41 41 H 1.09001 * 110.74691 * 203.73447 * 22 21 20 42 42 H 1.09005 * 110.92280 * 80.43999 * 22 21 20 43 43 H 1.09003 * 110.49208 * 214.35330 * 23 2 1 44 44 H 1.08998 * 110.48781 * 336.87026 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 7 1.5457 2.1430 1.1787 5 6 1.8791 3.4319 1.3885 6 8 2.6008 4.0073 0.6019 7 6 1.3561 4.1576 2.6012 8 1 0.3175 3.8753 2.7738 9 7 1.4388 5.6072 2.3778 10 6 2.1967 3.7811 3.8229 11 6 1.5910 4.4188 5.0749 12 6 2.4186 4.0474 6.2783 13 1 3.2898 3.4197 6.1617 14 6 2.0643 4.5098 7.5280 15 7 2.7869 4.1861 8.5780 16 14 0.5580 5.5960 7.7295 17 1 -0.6346 4.7471 7.9784 18 1 0.7604 6.5147 8.8785 19 1 0.3510 6.3898 6.4916 20 6 2.0571 -0.7536 -1.2336 21 6 2.8882 -1.9406 -0.7043 22 6 2.3280 -2.1901 0.7193 23 6 2.0583 -0.7553 1.2370 24 1 -0.3634 -1.0273 0.0254 25 1 -0.3635 0.5357 0.8769 26 1 -0.3632 0.4916 -0.9025 27 1 3.1443 1.4262 0.0255 28 1 1.7175 1.9470 -0.9025 29 1 0.9688 1.6826 1.8080 30 1 2.3923 5.8942 2.2153 31 1 0.8410 5.8902 1.6158 32 1 2.2076 2.6970 3.9363 33 1 3.2161 4.1426 3.6879 34 1 1.5801 5.5027 4.9615 35 1 0.5716 4.0572 5.2098 36 1 2.5375 4.5111 9.4572 37 1 1.2230 -1.1190 -1.8326 38 1 2.6861 -0.0953 -1.8327 39 1 2.7412 -2.8193 -1.3322 40 1 3.9446 -1.6762 -0.6579 41 1 3.0674 -2.6930 1.3426 42 1 1.4035 -2.7661 0.6784 43 1 2.9810 -0.3000 1.5969 44 1 1.3068 -0.7674 2.0264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424146609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = -74.201259 kcal Electronic energy + Delta-G solvation = -20971.447687 eV Core-core repulsion = 17921.933582 eV Total energy + Delta-G solvation = -3049.514104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18763 -38.92137 -35.37024 -34.59872 -32.74226 -31.36670 -30.46689 -29.03815 -27.62021 -26.31612 -24.60220 -22.95401 -21.13723 -20.32353 -19.85058 -18.99633 -17.23961 -16.63195 -16.45301 -15.70973 -15.32515 -15.20547 -14.75130 -14.20881 -14.08133 -13.90079 -13.49736 -13.41600 -13.18004 -12.67627 -12.57930 -12.36639 -12.01317 -11.62350 -11.39932 -11.30556 -11.11476 -11.00661 -10.85498 -10.80853 -10.79080 -10.76509 -10.35769 -9.90452 -9.76253 -9.55870 -9.09515 -9.03611 -8.49126 -8.36868 -5.98379 -3.95852 2.76022 3.28320 3.36730 3.44658 3.52972 4.23826 4.26714 4.39182 4.52623 4.81118 4.91849 4.98440 5.03925 5.06516 5.09944 5.22659 5.36108 5.40458 5.41462 5.46437 5.54706 5.58974 5.67053 5.69063 5.70795 5.76654 5.83487 5.88392 6.04186 6.07659 6.13732 6.31241 6.45791 6.50582 6.89219 7.27975 7.37909 7.55668 7.62306 7.69032 7.88052 8.30490 8.59335 9.06442 9.64756 11.15142 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.004034 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.720267 B = 6939.252664 C = 7632.943167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C 0.131 3.869 4 N -0.727 5.727 5 C 0.482 3.518 6 O -0.554 6.554 7 C 0.075 3.925 8 H 0.096 0.904 9 N -0.811 5.811 10 C -0.087 4.087 11 C -0.004 4.004 12 C -0.521 4.521 13 H 0.069 0.931 14 C 0.066 3.934 15 N -0.907 5.907 16 Si 0.879 3.121 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.260 1.260 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.402 0.598 30 H 0.349 0.651 31 H 0.334 0.666 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.215 -11.231 -19.833 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C 0.007 3.993 4 N -0.380 5.380 5 C 0.268 3.732 6 O -0.432 6.432 7 C -0.041 4.041 8 H 0.114 0.886 9 N -0.339 5.339 10 C -0.125 4.125 11 C -0.042 4.042 12 C -0.559 4.559 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.184 1.184 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.237 0.763 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.963 -10.692 -19.465 22.756 hybrid contribution -0.623 -0.025 -0.441 0.764 sum -5.586 -10.717 -19.906 23.287 Atomic orbital electron populations 1.21919 0.93852 1.01927 1.01973 1.21458 0.96082 0.94007 0.96262 1.21454 0.98786 0.90638 0.88442 1.46185 1.52516 1.12582 1.26735 1.22594 0.80272 0.81981 0.88371 1.90648 1.37488 1.67235 1.47866 1.21850 1.01595 0.88171 0.92513 0.88560 1.59033 1.15199 1.10569 1.49108 1.21459 0.98312 1.00139 0.92596 1.19486 0.95432 0.97291 0.91974 1.21186 1.12483 1.31642 0.90577 0.91331 1.25016 0.96681 0.95929 0.95886 1.69927 1.39519 1.46102 0.99061 0.86773 0.83371 0.81134 0.78068 1.20524 1.21618 1.18400 1.22195 0.99634 0.96818 0.96443 1.22375 0.99624 0.97756 0.96461 1.22491 1.00784 0.96737 0.96095 1.22536 1.01547 0.95176 0.96465 0.92188 0.92450 0.92527 0.91637 0.91953 0.76296 0.83634 0.85385 0.92254 0.92242 0.94787 0.97383 0.92860 0.91382 0.91522 0.91767 0.91567 0.91514 0.91571 0.90976 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 7.98 37.16 0.30 -0.76 16 2 C -0.08 -0.65 0.66 -153.39 -0.10 -0.75 16 3 C 0.13 1.42 4.21 -4.04 -0.02 1.40 16 4 N -0.73 -8.75 5.05 -60.29 -0.30 -9.05 16 5 C 0.48 7.36 7.07 -10.99 -0.08 7.28 16 6 O -0.55 -10.10 16.25 5.56 0.09 -10.01 16 7 C 0.07 1.18 3.15 -68.87 -0.22 0.96 16 8 H 0.10 1.39 8.14 -51.92 -0.42 0.96 16 9 N -0.81 -12.93 8.44 -5.65 -0.05 -12.97 16 10 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 11 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 12 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 13 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.91 -28.26 13.96 55.43 0.77 -27.48 16 16 Si 0.88 21.99 27.47 -169.99 -4.67 17.33 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 20 C -0.11 -0.85 6.11 -25.61 -0.16 -1.00 16 21 C -0.12 -0.91 6.84 -25.01 -0.17 -1.08 16 22 C -0.12 -0.95 6.91 -24.67 -0.17 -1.12 16 23 C -0.12 -1.05 5.37 -25.07 -0.13 -1.19 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.44 6.79 -51.93 -0.35 0.09 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.40 4.19 6.95 -40.82 -0.28 3.90 16 30 H 0.35 5.73 8.58 -39.29 -0.34 5.39 16 31 H 0.33 4.59 9.06 -39.29 -0.36 4.24 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.84 6.81 -51.93 -0.35 0.48 16 35 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 38 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 44 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -32.66 346.67 -8.27 -40.93 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.92 Total: 7.71 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.42 Total: -11.67 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.42 Total: -49.51 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.66 -8.27 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424146609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.271 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds