Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.05489 * 2 1 4 4 N 1.46505 * 109.47256 * 58.57796 * 3 2 1 5 5 C 1.34776 * 119.99820 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00100 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00073 * 180.02562 * 5 4 3 8 8 H 1.09008 * 109.47261 * 319.99977 * 7 5 4 9 9 N 1.46900 * 109.47252 * 199.99979 * 7 5 4 10 10 C 1.53001 * 109.47433 * 79.99870 * 7 5 4 11 11 C 1.52996 * 109.47278 * 185.00250 * 10 7 5 12 12 C 1.50699 * 109.47125 * 179.97438 * 11 10 7 13 13 H 1.08004 * 119.99945 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00069 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99597 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99954 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47108 * 89.99775 * 16 14 12 18 18 H 1.48503 * 109.46948 * 210.00049 * 16 14 12 19 19 H 1.48497 * 109.47004 * 329.99612 * 16 14 12 20 20 C 1.53869 * 110.03587 * 238.57860 * 2 1 3 21 21 C 1.54270 * 106.63967 * 240.69205 * 20 2 1 22 22 C 1.55005 * 104.13720 * 23.62421 * 21 20 2 23 23 C 1.54268 * 110.02861 * 121.40888 * 2 1 3 24 24 H 1.08998 * 109.47417 * 181.41792 * 1 2 3 25 25 H 1.08995 * 109.47912 * 301.42187 * 1 2 3 26 26 H 1.09003 * 109.46563 * 61.42261 * 1 2 3 27 27 H 1.09003 * 109.47022 * 178.58091 * 3 2 1 28 28 H 1.08997 * 109.46645 * 298.57674 * 3 2 1 29 29 H 0.96991 * 119.99675 * 0.02562 * 4 3 2 30 30 H 1.00897 * 111.00101 * 299.99941 * 9 7 5 31 31 H 1.00899 * 110.99583 * 63.95414 * 9 7 5 32 32 H 1.09007 * 109.46796 * 305.00111 * 10 7 5 33 33 H 1.08998 * 109.46884 * 65.00009 * 10 7 5 34 34 H 1.08990 * 109.47126 * 300.00008 * 11 10 7 35 35 H 1.09005 * 109.47060 * 59.99884 * 11 10 7 36 36 H 0.96999 * 119.99578 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.03268 * 0.02562 * 20 2 1 38 38 H 1.08995 * 110.03391 * 121.38598 * 20 2 1 39 39 H 1.08998 * 110.48170 * 142.31277 * 21 20 2 40 40 H 1.08998 * 110.48753 * 264.95665 * 21 20 2 41 41 H 1.09001 * 110.74691 * 203.73447 * 22 21 20 42 42 H 1.09005 * 110.92280 * 80.43999 * 22 21 20 43 43 H 1.09003 * 110.49208 * 214.35330 * 23 2 1 44 44 H 1.08998 * 110.48781 * 336.87026 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 7 1.5457 2.1430 1.1787 5 6 1.8791 3.4319 1.3885 6 8 2.6008 4.0073 0.6019 7 6 1.3561 4.1576 2.6012 8 1 0.3175 3.8753 2.7738 9 7 1.4388 5.6072 2.3778 10 6 2.1967 3.7811 3.8229 11 6 1.5910 4.4188 5.0749 12 6 2.4186 4.0474 6.2783 13 1 3.2898 3.4197 6.1617 14 6 2.0643 4.5098 7.5280 15 7 2.7869 4.1861 8.5780 16 14 0.5580 5.5960 7.7295 17 1 -0.6346 4.7471 7.9784 18 1 0.7604 6.5147 8.8785 19 1 0.3510 6.3898 6.4916 20 6 2.0571 -0.7536 -1.2336 21 6 2.8882 -1.9406 -0.7043 22 6 2.3280 -2.1901 0.7193 23 6 2.0583 -0.7553 1.2370 24 1 -0.3634 -1.0273 0.0254 25 1 -0.3635 0.5357 0.8769 26 1 -0.3632 0.4916 -0.9025 27 1 3.1443 1.4262 0.0255 28 1 1.7175 1.9470 -0.9025 29 1 0.9688 1.6826 1.8080 30 1 2.3923 5.8942 2.2153 31 1 0.8410 5.8902 1.6158 32 1 2.2076 2.6970 3.9363 33 1 3.2161 4.1426 3.6879 34 1 1.5801 5.5027 4.9615 35 1 0.5716 4.0572 5.2098 36 1 2.5375 4.5111 9.4572 37 1 1.2230 -1.1190 -1.8326 38 1 2.6861 -0.0953 -1.8327 39 1 2.7412 -2.8193 -1.3322 40 1 3.9446 -1.6762 -0.6579 41 1 3.0674 -2.6930 1.3426 42 1 1.4035 -2.7661 0.6784 43 1 2.9810 -0.3000 1.5969 44 1 1.3068 -0.7674 2.0264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424146609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = -97.154944 kcal Electronic energy + Delta-G solvation = -20972.443033 eV Core-core repulsion = 17921.933582 eV Total energy + Delta-G solvation = -3050.509451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25197 -39.80843 -36.86330 -35.63019 -34.77625 -32.28716 -32.12093 -29.67700 -28.83182 -27.57496 -25.68305 -24.29822 -22.22467 -21.67631 -21.02364 -19.78503 -18.93575 -18.16789 -17.53432 -16.90648 -16.37452 -16.15569 -16.10224 -15.66356 -15.29677 -14.87654 -14.68663 -14.52901 -14.39989 -14.08955 -13.83835 -13.46772 -13.28763 -12.81072 -12.75133 -12.53166 -12.02528 -11.98957 -11.94941 -11.74885 -11.70946 -11.59813 -11.52209 -11.48143 -11.37056 -11.29368 -11.10612 -10.70193 -10.11811 -9.66040 -8.24368 -6.27680 1.40490 1.44311 1.51936 1.58387 2.21743 2.42498 3.12290 3.53680 3.55441 3.60578 3.72681 3.88223 4.07760 4.25031 4.27777 4.30525 4.38043 4.45998 4.58794 4.68647 4.71505 4.77654 4.79582 4.84759 4.97121 4.97293 5.07349 5.14050 5.14348 5.23048 5.24863 5.33536 5.45633 5.47231 5.49563 5.51122 5.66123 5.74540 6.06943 6.33103 6.44982 6.53900 6.80932 7.15489 7.36926 8.92586 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.004034 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.720267 B = 6939.252664 C = 7632.943167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C 0.132 3.868 4 N -0.712 5.712 5 C 0.484 3.516 6 O -0.586 6.586 7 C 0.084 3.916 8 H 0.121 0.879 9 N -0.819 5.819 10 C -0.079 4.079 11 C 0.003 3.997 12 C -0.532 4.532 13 H 0.027 0.973 14 C 0.002 3.998 15 N -0.955 5.955 16 Si 0.952 3.048 17 H -0.263 1.263 18 H -0.289 1.289 19 H -0.245 1.245 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.123 4.123 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.412 0.588 30 H 0.345 0.655 31 H 0.349 0.651 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 -11.575 -21.161 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 C 0.008 3.992 4 N -0.364 5.364 5 C 0.270 3.730 6 O -0.467 6.467 7 C -0.032 4.032 8 H 0.139 0.861 9 N -0.348 5.348 10 C -0.117 4.117 11 C -0.035 4.035 12 C -0.570 4.570 13 H 0.045 0.955 14 C -0.194 4.194 15 N -0.597 5.597 16 Si 0.776 3.224 17 H -0.188 1.188 18 H -0.216 1.216 19 H -0.168 1.168 20 C -0.150 4.150 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.161 4.161 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.249 0.751 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.501 -11.073 -20.813 24.740 hybrid contribution 0.263 0.008 -0.025 0.264 sum -7.238 -11.064 -20.839 24.679 Atomic orbital electron populations 1.21916 0.92701 1.02762 1.02137 1.21410 0.96862 0.92144 0.96577 1.21522 0.97851 0.92126 0.87691 1.46098 1.51679 1.11592 1.27065 1.22408 0.79930 0.82756 0.87938 1.90640 1.38930 1.68137 1.48956 1.21672 1.01972 0.88474 0.91044 0.86140 1.59024 1.15263 1.10500 1.49966 1.21253 0.97586 1.00126 0.92743 1.19369 0.95391 0.97164 0.91555 1.21566 1.11830 1.30757 0.92826 0.95455 1.26018 1.00315 0.97609 0.95422 1.70086 1.41875 1.47891 0.99804 0.85620 0.79203 0.79160 0.78446 1.18825 1.21566 1.16796 1.22208 1.00072 0.96685 0.96031 1.22380 0.99143 0.98198 0.96443 1.22493 1.01286 0.95948 0.96183 1.22542 1.00702 0.96027 0.96783 0.91033 0.92481 0.92185 0.93349 0.92115 0.75092 0.84152 0.83805 0.91663 0.94336 0.95270 0.95850 0.92663 0.90017 0.91893 0.90435 0.92321 0.91758 0.90455 0.92964 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.98 71.98 0.57 -1.16 16 2 C -0.07 -1.05 0.66 -51.46 -0.03 -1.09 16 3 C 0.13 2.75 4.21 86.38 0.36 3.11 16 4 N -0.71 -16.16 5.05 -463.05 -2.34 -18.50 16 5 C 0.48 14.21 7.07 87.66 0.62 14.83 16 6 O -0.59 -21.04 16.25 -3.03 -0.05 -21.09 16 7 C 0.08 2.51 3.15 44.17 0.14 2.65 16 8 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 9 N -0.82 -24.71 8.44 -171.80 -1.45 -26.16 16 10 C -0.08 -3.00 4.78 30.59 0.15 -2.86 16 11 C 0.00 0.12 3.93 29.85 0.12 0.24 16 12 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 13 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 14 C 0.00 0.15 5.47 84.66 0.46 0.61 16 15 N -0.96 -60.74 13.96 21.45 0.30 -60.44 16 16 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.24 -10.82 6.54 99.48 0.65 -10.17 16 20 C -0.11 -1.48 6.11 31.32 0.19 -1.28 16 21 C -0.12 -1.61 6.84 31.71 0.22 -1.39 16 22 C -0.12 -1.68 6.91 31.93 0.22 -1.46 16 23 C -0.12 -2.03 5.37 31.67 0.17 -1.86 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.72 6.79 -2.39 -0.02 0.71 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.41 7.75 6.95 -92.71 -0.64 7.10 16 30 H 0.35 11.06 8.58 -89.70 -0.77 10.29 16 31 H 0.35 8.83 9.06 -89.69 -0.81 8.02 16 32 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.03 1.38 6.81 -2.39 -0.02 1.36 16 35 H 0.02 1.01 7.57 -2.38 -0.02 0.99 16 36 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.08 0.88 7.67 -2.39 -0.02 0.86 16 38 H 0.06 0.89 7.67 -2.39 -0.02 0.87 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.05 1.07 7.84 -2.39 -0.02 1.05 16 44 H 0.07 1.15 7.84 -2.39 -0.02 1.13 16 Total: -1.00 -70.89 346.67 0.49 -70.41 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -1.29 Total: 29.45 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 3.43 Total: -20.28 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -3.49 Total: -105.10 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Total: -70.89 0.49 -70.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424146609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.748 kcal (2) G-P(sol) polarization free energy of solvation -70.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds