Wall clock time and date at job start Mon Mar 30 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 115.56557 * 2 1 4 4 C 1.53005 * 117.49985 * 145.68754 * 2 1 3 5 5 N 1.46499 * 117.50176 * 214.98270 * 4 2 1 6 6 C 1.34777 * 120.00199 * 155.08759 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4 9 9 H 1.09003 * 109.46824 * 319.71785 * 8 6 5 10 10 N 1.46900 * 109.46704 * 199.72391 * 8 6 5 11 11 C 1.53002 * 109.47121 * 79.72099 * 8 6 5 12 12 C 1.52996 * 109.46946 * 185.00076 * 11 8 6 13 13 C 1.50694 * 109.47332 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99886 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00223 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99937 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99885 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47515 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47340 * 120.00537 * 17 15 13 20 20 H 1.48506 * 109.47296 * 240.00251 * 17 15 13 21 21 C 1.52996 * 60.03127 * 107.47714 * 4 2 1 22 22 C 1.52999 * 117.49807 * 107.50368 * 21 4 2 23 23 C 1.52997 * 117.49998 * 252.52142 * 21 4 2 24 24 H 1.08999 * 109.47389 * 325.70332 * 1 2 3 25 25 H 1.08998 * 109.47126 * 85.70354 * 1 2 3 26 26 H 1.09000 * 109.47446 * 205.70187 * 1 2 3 27 27 H 1.09002 * 109.47827 * 154.29583 * 3 2 1 28 28 H 1.09003 * 109.47152 * 274.29919 * 3 2 1 29 29 H 1.09002 * 109.47195 * 34.29570 * 3 2 1 30 30 H 1.09008 * 117.49608 * 359.97438 * 4 2 1 31 31 H 0.97000 * 119.99484 * 335.07856 * 5 4 2 32 32 H 1.00898 * 110.99811 * 299.99578 * 10 8 6 33 33 H 1.00898 * 111.00326 * 63.95847 * 10 8 6 34 34 H 1.08996 * 109.46933 * 304.99916 * 11 8 6 35 35 H 1.08998 * 109.47170 * 65.00270 * 11 8 6 36 36 H 1.09000 * 109.47119 * 300.00211 * 12 11 8 37 37 H 1.09002 * 109.47419 * 59.99484 * 12 11 8 38 38 H 0.97004 * 119.99765 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47339 * 111.38895 * 22 21 4 40 40 H 1.08995 * 109.47249 * 231.39048 * 22 21 4 41 41 H 1.09006 * 109.47075 * 351.39317 * 22 21 4 42 42 H 1.09003 * 109.47491 * 8.61152 * 23 21 4 43 43 H 1.09001 * 109.47106 * 128.61169 * 23 21 4 44 44 H 1.09005 * 109.47249 * 248.60865 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 0.7650 5 7 3.4932 -0.7906 1.4415 6 6 3.8996 -1.5177 2.5011 7 8 3.2246 -2.4453 2.8948 8 6 5.1893 -1.1739 3.2008 9 1 5.9443 -0.9082 2.4609 10 7 5.6500 -2.3337 3.9758 11 6 4.9589 0.0098 4.1423 12 6 6.2921 0.4386 4.7582 13 6 6.0654 1.6049 5.6851 14 1 5.0698 2.0006 5.8216 15 6 7.1288 2.1663 6.3597 16 7 8.3410 1.6842 6.1939 17 14 6.8475 3.6116 7.5092 18 1 5.4043 3.9615 7.5208 19 1 7.2781 3.2435 8.8820 20 1 7.6364 4.7787 7.0393 21 6 2.2366 -1.1219 -0.7649 22 6 3.5494 -0.7777 -1.4714 23 6 1.3588 -2.1572 -1.4709 24 1 -0.3634 0.8490 0.5791 25 1 -0.3633 0.0770 -1.0248 26 1 -0.3634 -0.9260 0.4457 27 1 3.1823 1.3084 0.4457 28 1 2.2775 1.7412 -1.0248 29 1 1.5811 2.0743 0.5791 30 1 1.6111 -1.8583 1.2687 31 1 4.0328 -0.0486 1.1268 32 1 4.9668 -2.5998 4.6690 33 1 5.8710 -3.1092 3.3693 34 1 4.5331 0.8422 3.5820 35 1 4.2707 -0.2846 4.9346 36 1 6.7179 -0.3939 5.3185 37 1 6.9805 0.7330 3.9660 38 1 9.0892 2.0794 6.6683 39 1 3.9368 -1.6656 -1.9711 40 1 3.3709 0.0052 -2.2084 41 1 4.2757 -0.4275 -0.7379 42 1 0.7293 -2.6608 -0.7372 43 1 0.7296 -1.6581 -2.2079 44 1 1.9920 -2.8903 -1.9706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424161774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:04 Heat of formation + Delta-G solvation = -38.365732 kcal Electronic energy + Delta-G solvation = -21064.157819 eV Core-core repulsion = 18016.197660 eV Total energy + Delta-G solvation = -3047.960159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47174 -38.83212 -35.17638 -33.50931 -32.78876 -31.40511 -30.09786 -28.85747 -27.62412 -26.51041 -26.06168 -23.67151 -20.90653 -20.18284 -19.82550 -18.01400 -17.23310 -16.45915 -16.09489 -15.51606 -15.02708 -14.63903 -14.39398 -14.24833 -14.20313 -13.52520 -13.41911 -12.86401 -12.77673 -12.74549 -12.50116 -12.33894 -12.22461 -12.04856 -12.01446 -11.73950 -11.55793 -11.05240 -10.91311 -10.73936 -10.66568 -10.52304 -10.13012 -9.80310 -9.60805 -9.37446 -8.98747 -8.60453 -8.35490 -8.20639 -5.93949 -3.96000 2.67681 3.14906 3.33804 3.41476 3.45375 3.55639 4.41224 4.48534 4.50362 4.53983 4.84386 4.85587 4.87973 5.06940 5.24767 5.35526 5.41707 5.47284 5.51724 5.52366 5.59640 5.65877 5.69938 5.70896 5.73638 5.79859 5.82739 5.83071 6.00148 6.05330 6.18470 6.42054 6.52642 6.65844 7.08427 7.37378 7.59432 7.76242 7.80055 7.96105 8.12976 8.31607 8.48515 9.12193 9.67258 11.16992 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.004009 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.981841 B = 6982.214429 C = 7552.370047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C -0.116 4.116 4 C 0.096 3.904 5 N -0.700 5.700 6 C 0.487 3.513 7 O -0.553 6.553 8 C 0.079 3.921 9 H 0.097 0.903 10 N -0.806 5.806 11 C -0.095 4.095 12 C 0.031 3.969 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.136 4.136 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.133 0.867 31 H 0.402 0.598 32 H 0.348 0.652 33 H 0.334 0.666 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.013 0.987 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 -4.722 -17.017 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.132 4.132 3 C -0.174 4.174 4 C -0.011 4.011 5 N -0.351 5.351 6 C 0.273 3.727 7 O -0.430 6.430 8 C -0.037 4.037 9 H 0.115 0.885 10 N -0.334 5.334 11 C -0.133 4.133 12 C -0.006 4.006 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.138 4.138 22 C -0.171 4.171 23 C -0.168 4.168 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.240 0.760 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.397 -4.902 -16.383 21.121 hybrid contribution -0.701 0.729 0.032 1.012 sum -13.097 -4.173 -16.352 21.362 Atomic orbital electron populations 1.21303 0.91693 1.02163 1.01741 1.22179 0.95179 0.91790 1.04059 1.21296 1.00295 0.93894 1.01881 1.22073 0.88503 1.00364 0.90157 1.45709 1.22864 1.34687 1.31884 1.22804 0.89330 0.81440 0.79098 1.90632 1.56941 1.30322 1.65096 1.21844 0.90576 0.95019 0.96249 0.88502 1.58999 1.48112 1.08645 1.17631 1.21659 1.02561 0.92526 0.96589 1.19022 0.89785 0.96351 0.95473 1.21314 0.93687 1.15326 1.25664 0.92935 1.24991 0.95263 0.97172 0.96913 1.69986 0.98960 1.41410 1.42818 0.86600 0.78164 0.82676 0.80912 1.19856 1.21047 1.21104 1.22241 0.98173 0.99464 0.93944 1.21266 0.94497 1.01539 0.99844 1.21288 0.98627 0.97013 0.99858 0.92015 0.92095 0.92353 0.92427 0.91980 0.91700 0.84985 0.76000 0.83798 0.85438 0.92880 0.92795 0.94633 0.96888 0.93161 0.92110 0.92108 0.92413 0.92369 0.92150 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 8.88 37.15 0.33 -0.62 16 2 C -0.13 -1.27 2.70 -154.47 -0.42 -1.69 16 3 C -0.12 -1.08 8.82 37.15 0.33 -0.75 16 4 C 0.10 1.14 5.67 -67.93 -0.39 0.76 16 5 N -0.70 -9.12 4.61 -53.80 -0.25 -9.36 16 6 C 0.49 7.79 7.07 -10.98 -0.08 7.71 16 7 O -0.55 -10.31 15.82 5.55 0.09 -10.22 16 8 C 0.08 1.33 3.15 -68.86 -0.22 1.12 16 9 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 10 N -0.81 -13.71 8.44 -5.65 -0.05 -13.76 16 11 C -0.09 -1.93 4.78 -26.73 -0.13 -2.05 16 12 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 13 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.14 -1.31 2.70 -154.47 -0.42 -1.72 16 22 C -0.11 -1.01 8.82 37.16 0.33 -0.68 16 23 C -0.11 -0.91 8.88 37.16 0.33 -0.58 16 24 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 25 H 0.06 0.45 8.02 -51.93 -0.42 0.03 16 26 H 0.06 0.49 7.78 -51.93 -0.40 0.09 16 27 H 0.06 0.56 5.62 -51.93 -0.29 0.27 16 28 H 0.06 0.50 8.02 -51.93 -0.42 0.09 16 29 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 30 H 0.13 1.80 7.22 -51.92 -0.37 1.42 16 31 H 0.40 4.65 5.42 -40.82 -0.22 4.43 16 32 H 0.35 6.02 8.58 -39.29 -0.34 5.68 16 33 H 0.33 4.94 9.06 -39.29 -0.36 4.58 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.06 0.52 7.92 -51.93 -0.41 0.10 16 40 H 0.06 0.48 8.02 -51.93 -0.42 0.06 16 41 H 0.06 0.53 5.99 -51.93 -0.31 0.22 16 42 H 0.06 0.49 7.78 -51.93 -0.40 0.08 16 43 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 44 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -31.89 351.51 -7.71 -39.60 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.65 Total: 9.26 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.87 Total: -11.37 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.44 Total: -49.30 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.89 -7.71 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.234 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds