Wall clock time and date at job start Mon Mar 30 2020 01:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 115.56557 * 2 1 4 4 C 1.53005 * 117.49985 * 145.68754 * 2 1 3 5 5 N 1.46499 * 117.50176 * 214.98270 * 4 2 1 6 6 C 1.34777 * 120.00199 * 155.08759 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4 9 9 H 1.09003 * 109.46824 * 319.71785 * 8 6 5 10 10 N 1.46900 * 109.46704 * 199.72391 * 8 6 5 11 11 C 1.53002 * 109.47121 * 79.72099 * 8 6 5 12 12 C 1.52996 * 109.46946 * 185.00076 * 11 8 6 13 13 C 1.50694 * 109.47332 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99886 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00223 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99937 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99885 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47515 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47340 * 120.00537 * 17 15 13 20 20 H 1.48506 * 109.47296 * 240.00251 * 17 15 13 21 21 C 1.52996 * 60.03127 * 107.47714 * 4 2 1 22 22 C 1.52999 * 117.49807 * 107.50368 * 21 4 2 23 23 C 1.52997 * 117.49998 * 252.52142 * 21 4 2 24 24 H 1.08999 * 109.47389 * 325.70332 * 1 2 3 25 25 H 1.08998 * 109.47126 * 85.70354 * 1 2 3 26 26 H 1.09000 * 109.47446 * 205.70187 * 1 2 3 27 27 H 1.09002 * 109.47827 * 154.29583 * 3 2 1 28 28 H 1.09003 * 109.47152 * 274.29919 * 3 2 1 29 29 H 1.09002 * 109.47195 * 34.29570 * 3 2 1 30 30 H 1.09008 * 117.49608 * 359.97438 * 4 2 1 31 31 H 0.97000 * 119.99484 * 335.07856 * 5 4 2 32 32 H 1.00898 * 110.99811 * 299.99578 * 10 8 6 33 33 H 1.00898 * 111.00326 * 63.95847 * 10 8 6 34 34 H 1.08996 * 109.46933 * 304.99916 * 11 8 6 35 35 H 1.08998 * 109.47170 * 65.00270 * 11 8 6 36 36 H 1.09000 * 109.47119 * 300.00211 * 12 11 8 37 37 H 1.09002 * 109.47419 * 59.99484 * 12 11 8 38 38 H 0.97004 * 119.99765 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47339 * 111.38895 * 22 21 4 40 40 H 1.08995 * 109.47249 * 231.39048 * 22 21 4 41 41 H 1.09006 * 109.47075 * 351.39317 * 22 21 4 42 42 H 1.09003 * 109.47491 * 8.61152 * 23 21 4 43 43 H 1.09001 * 109.47106 * 128.61169 * 23 21 4 44 44 H 1.09005 * 109.47249 * 248.60865 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 0.7650 5 7 3.4932 -0.7906 1.4415 6 6 3.8996 -1.5177 2.5011 7 8 3.2246 -2.4453 2.8948 8 6 5.1893 -1.1739 3.2008 9 1 5.9443 -0.9082 2.4609 10 7 5.6500 -2.3337 3.9758 11 6 4.9589 0.0098 4.1423 12 6 6.2921 0.4386 4.7582 13 6 6.0654 1.6049 5.6851 14 1 5.0698 2.0006 5.8216 15 6 7.1288 2.1663 6.3597 16 7 8.3410 1.6842 6.1939 17 14 6.8475 3.6116 7.5092 18 1 5.4043 3.9615 7.5208 19 1 7.2781 3.2435 8.8820 20 1 7.6364 4.7787 7.0393 21 6 2.2366 -1.1219 -0.7649 22 6 3.5494 -0.7777 -1.4714 23 6 1.3588 -2.1572 -1.4709 24 1 -0.3634 0.8490 0.5791 25 1 -0.3633 0.0770 -1.0248 26 1 -0.3634 -0.9260 0.4457 27 1 3.1823 1.3084 0.4457 28 1 2.2775 1.7412 -1.0248 29 1 1.5811 2.0743 0.5791 30 1 1.6111 -1.8583 1.2687 31 1 4.0328 -0.0486 1.1268 32 1 4.9668 -2.5998 4.6690 33 1 5.8710 -3.1092 3.3693 34 1 4.5331 0.8422 3.5820 35 1 4.2707 -0.2846 4.9346 36 1 6.7179 -0.3939 5.3185 37 1 6.9805 0.7330 3.9660 38 1 9.0892 2.0794 6.6683 39 1 3.9368 -1.6656 -1.9711 40 1 3.3709 0.0052 -2.2084 41 1 4.2757 -0.4275 -0.7379 42 1 0.7293 -2.6608 -0.7372 43 1 0.7296 -1.6581 -2.2079 44 1 1.9920 -2.8903 -1.9706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424161774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:03 Heat of formation + Delta-G solvation = -59.525343 kcal Electronic energy + Delta-G solvation = -21065.075369 eV Core-core repulsion = 18016.197660 eV Total energy + Delta-G solvation = -3048.877709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51587 -39.93320 -36.79006 -34.82576 -34.60815 -32.11222 -31.93787 -29.56794 -28.76864 -27.57924 -27.18715 -25.36096 -22.56429 -21.25516 -21.17185 -18.77312 -18.69510 -18.10321 -17.46035 -16.93977 -16.46578 -15.89964 -15.69274 -15.46370 -15.18183 -14.87821 -14.35322 -14.29278 -13.82744 -13.66374 -13.45875 -13.43790 -13.40396 -13.17381 -12.98121 -12.82458 -12.70688 -12.51349 -12.48756 -12.26491 -11.78820 -11.76497 -11.67793 -11.65810 -11.25924 -11.00170 -10.49845 -10.39604 -9.64002 -9.57741 -8.13921 -6.24093 1.40627 1.41858 1.43414 1.55058 2.05065 2.44669 2.72331 3.19253 3.50063 3.60054 3.70766 3.75089 3.80159 4.08727 4.12486 4.15669 4.29475 4.53559 4.66478 4.71683 4.75894 4.83551 4.89360 4.90659 4.92890 4.96651 4.99995 5.05316 5.14207 5.16155 5.23143 5.26670 5.36731 5.47478 5.50162 5.57289 5.83840 5.98263 6.07310 6.30360 6.40987 6.51256 6.94465 7.10672 7.44099 8.97507 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.004009 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.981841 B = 6982.214429 C = 7552.370047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C -0.119 4.119 4 C 0.064 3.936 5 N -0.685 5.685 6 C 0.492 3.508 7 O -0.582 6.582 8 C 0.087 3.913 9 H 0.110 0.890 10 N -0.817 5.817 11 C -0.081 4.081 12 C 0.039 3.961 13 C -0.543 4.543 14 H 0.055 0.945 15 C 0.002 3.998 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.277 1.277 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.111 4.111 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.411 0.589 32 H 0.345 0.655 33 H 0.347 0.653 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.006 0.994 37 H -0.005 1.005 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 -3.595 -18.390 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.121 4.121 3 C -0.176 4.176 4 C -0.042 4.042 5 N -0.336 5.336 6 C 0.278 3.722 7 O -0.462 6.462 8 C -0.029 4.029 9 H 0.127 0.873 10 N -0.346 5.346 11 C -0.119 4.119 12 C 0.002 3.998 13 C -0.581 4.581 14 H 0.073 0.927 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.785 3.215 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.202 1.202 21 C -0.124 4.124 22 C -0.174 4.174 23 C -0.168 4.168 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.250 0.750 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.517 -3.759 -17.799 22.664 hybrid contribution -0.360 0.364 0.410 0.656 sum -13.877 -3.395 -17.389 22.505 Atomic orbital electron populations 1.21339 0.90694 1.02086 1.02837 1.22281 0.95916 0.91598 1.02281 1.21345 0.99825 0.93535 1.02899 1.22163 0.88218 1.02103 0.91709 1.45555 1.23220 1.34004 1.30847 1.22409 0.88625 0.81464 0.79741 1.90621 1.57546 1.31766 1.66250 1.21632 0.91701 0.93779 0.95782 0.87253 1.58978 1.48187 1.09283 1.18157 1.21385 0.99290 0.94375 0.96893 1.18829 0.91887 0.94643 0.94428 1.21747 0.93893 1.16177 1.26278 0.92686 1.25891 0.94943 1.00121 0.98603 1.70111 0.99902 1.42997 1.43954 0.85487 0.78536 0.79063 0.78462 1.18849 1.20698 1.20217 1.22340 0.98688 0.99394 0.91973 1.21316 0.93821 1.02245 0.99970 1.21327 0.98653 0.96874 0.99988 0.91875 0.90391 0.92703 0.93058 0.90337 0.91702 0.87051 0.75027 0.84118 0.84010 0.91591 0.93956 0.97546 0.98665 0.92923 0.91720 0.90603 0.93000 0.92828 0.90498 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 8.88 71.98 0.64 -1.04 16 2 C -0.12 -2.10 2.70 -52.16 -0.14 -2.24 16 3 C -0.12 -1.95 8.82 71.98 0.63 -1.31 16 4 C 0.06 1.49 5.67 44.99 0.26 1.74 16 5 N -0.69 -17.36 4.61 -442.52 -2.04 -19.40 16 6 C 0.49 15.64 7.07 87.66 0.62 16.25 16 7 O -0.58 -21.89 15.82 -3.04 -0.05 -21.94 16 8 C 0.09 2.93 3.15 44.17 0.14 3.07 16 9 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 10 N -0.82 -28.14 8.44 -171.79 -1.45 -29.59 16 11 C -0.08 -3.30 4.78 30.59 0.15 -3.16 16 12 C 0.04 2.05 4.86 29.84 0.15 2.20 16 13 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 14 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.00 0.13 5.46 84.65 0.46 0.59 16 16 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 17 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.12 -2.11 2.70 -52.16 -0.14 -2.25 16 22 C -0.12 -1.79 8.82 71.98 0.64 -1.16 16 23 C -0.11 -1.61 8.88 71.98 0.64 -0.97 16 24 H 0.06 0.93 7.92 -2.39 -0.02 0.91 16 25 H 0.08 0.91 8.02 -2.39 -0.02 0.90 16 26 H 0.05 0.86 7.78 -2.39 -0.02 0.84 16 27 H 0.05 0.90 5.62 -2.39 -0.01 0.89 16 28 H 0.08 1.04 8.02 -2.39 -0.02 1.02 16 29 H 0.06 1.07 7.92 -2.39 -0.02 1.05 16 30 H 0.11 3.07 7.22 -2.38 -0.02 3.05 16 31 H 0.41 9.01 5.42 -92.71 -0.50 8.51 16 32 H 0.35 12.20 8.58 -89.70 -0.77 11.43 16 33 H 0.35 10.27 9.06 -89.70 -0.81 9.45 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 37 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.06 0.95 7.92 -2.38 -0.02 0.94 16 40 H 0.08 0.96 8.02 -2.39 -0.02 0.94 16 41 H 0.05 0.86 5.99 -2.38 -0.01 0.84 16 42 H 0.05 0.83 7.78 -2.39 -0.02 0.81 16 43 H 0.08 0.88 8.02 -2.39 -0.02 0.86 16 44 H 0.06 0.88 7.92 -2.38 -0.02 0.86 16 Total: -1.00 -68.34 351.51 1.95 -66.39 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -1.09 Total: 33.37 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 4.27 Total: -18.97 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.21 Total: -105.38 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.34 1.95 -66.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.866 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds