Wall clock time and date at job start Mon Mar 30 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 115.54602 * 2 1 4 4 C 1.53001 * 117.50358 * 145.67087 * 2 1 3 5 5 N 1.46496 * 117.50053 * 214.98327 * 4 2 1 6 6 C 1.34775 * 120.00555 * 155.08606 * 5 4 2 7 7 O 1.21283 * 119.99555 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00303 * 180.02562 * 6 5 4 9 9 H 1.08990 * 109.47465 * 39.99472 * 8 6 5 10 10 N 1.46901 * 109.46865 * 159.99804 * 8 6 5 11 11 C 1.53000 * 109.46738 * 279.99439 * 8 6 5 12 12 C 1.52997 * 109.47060 * 175.00110 * 11 8 6 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 8 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 C 1.52996 * 60.03215 * 107.48163 * 4 2 1 22 22 C 1.52999 * 117.50160 * 107.50608 * 21 4 2 23 23 C 1.53010 * 117.49623 * 252.52569 * 21 4 2 24 24 H 1.08996 * 109.47619 * 325.71761 * 1 2 3 25 25 H 1.09000 * 109.47527 * 85.72569 * 1 2 3 26 26 H 1.09001 * 109.46710 * 205.72204 * 1 2 3 27 27 H 1.09005 * 109.47143 * 154.28146 * 3 2 1 28 28 H 1.09003 * 109.46995 * 274.27387 * 3 2 1 29 29 H 1.08994 * 109.47535 * 34.27916 * 3 2 1 30 30 H 1.08996 * 117.49406 * 359.97422 * 4 2 1 31 31 H 0.97005 * 120.00198 * 335.08221 * 5 4 2 32 32 H 1.00897 * 111.00316 * 296.03838 * 10 8 6 33 33 H 1.00902 * 111.00138 * 60.00335 * 10 8 6 34 34 H 1.09002 * 109.47398 * 295.00279 * 11 8 6 35 35 H 1.09001 * 109.47194 * 55.00459 * 11 8 6 36 36 H 1.09002 * 109.47153 * 300.00319 * 12 11 8 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 8 38 38 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47287 * 111.38855 * 22 21 4 40 40 H 1.08999 * 109.46829 * 231.38826 * 22 21 4 41 41 H 1.08998 * 109.46877 * 351.38776 * 22 21 4 42 42 H 1.09003 * 109.46816 * 8.60455 * 23 21 4 43 43 H 1.08997 * 109.47125 * 128.60660 * 23 21 4 44 44 H 1.08999 * 109.46622 * 248.61106 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.2365 -1.1207 0.7653 5 7 3.4932 -0.7900 1.4417 6 6 3.8998 -1.5167 2.5014 7 8 3.2249 -2.4442 2.8955 8 6 5.1923 -1.1761 3.1975 9 1 5.2941 -0.0931 3.2651 10 7 5.1875 -1.7529 4.5485 11 6 6.3664 -1.7501 2.4020 12 6 7.6826 -1.2997 3.0389 13 6 8.8392 -1.8645 2.2551 14 1 8.6540 -2.4826 1.3890 15 6 10.1338 -1.5914 2.6430 16 7 10.3593 -0.8384 3.6974 17 14 11.5674 -2.2921 1.6718 18 1 11.0496 -3.1007 0.5390 19 1 12.3997 -1.1803 1.1461 20 1 12.3924 -3.1518 2.5579 21 6 2.2367 -1.1220 -0.7646 22 6 3.5495 -0.7779 -1.4712 23 6 1.3589 -2.1577 -1.4703 24 1 -0.3634 0.8491 0.5788 25 1 -0.3634 0.0766 -1.0248 26 1 -0.3633 -0.9259 0.4460 27 1 3.1818 1.3090 0.4460 28 1 2.2773 1.7413 -1.0248 29 1 1.5804 2.0745 0.5788 30 1 1.6113 -1.8578 1.2692 31 1 4.0329 -0.0480 1.1267 32 1 4.4604 -1.3420 5.1146 33 1 5.0942 -2.7570 4.5127 34 1 6.3129 -2.8388 2.4096 35 1 6.3188 -1.3912 1.3739 36 1 7.7361 -0.2111 3.0313 37 1 7.7303 -1.6586 4.0670 38 1 11.2700 -0.6460 3.9701 39 1 3.9369 -1.6660 -1.9707 40 1 3.3708 0.0047 -2.2085 41 1 4.2757 -0.4275 -0.7379 42 1 0.7296 -2.6611 -0.7363 43 1 0.7296 -1.6588 -2.2074 44 1 1.9922 -2.8908 -1.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424161775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:06 Heat of formation + Delta-G solvation = -59.511825 kcal Electronic energy + Delta-G solvation = -21101.478245 eV Core-core repulsion = 18052.601122 eV Total energy + Delta-G solvation = -3048.877122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51612 -39.93107 -36.79105 -34.82511 -34.60770 -32.11255 -31.93656 -29.56593 -28.77057 -27.57845 -27.18543 -25.36112 -22.56264 -21.25266 -21.17642 -18.76041 -18.70371 -18.11487 -17.46469 -16.90989 -16.46601 -15.87931 -15.77801 -15.43938 -15.11557 -14.91417 -14.36372 -14.29175 -13.81887 -13.66348 -13.45475 -13.44079 -13.40724 -13.17401 -12.97957 -12.82527 -12.70664 -12.51666 -12.48256 -12.26655 -11.79177 -11.75492 -11.68430 -11.65507 -11.25931 -11.00204 -10.49830 -10.39553 -9.63900 -9.57769 -8.13925 -6.24069 1.40701 1.41839 1.43418 1.54975 2.04731 2.44663 2.72658 3.19270 3.49974 3.60328 3.70996 3.74735 3.80384 4.08698 4.12843 4.15440 4.29491 4.53657 4.66323 4.71625 4.75679 4.83509 4.89423 4.90701 4.93053 4.96880 5.00128 5.05569 5.13911 5.16800 5.23438 5.26546 5.36878 5.48217 5.49670 5.57299 5.83815 5.98272 6.07298 6.30345 6.40906 6.51319 6.94475 7.10623 7.44120 8.97520 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.004095 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.363700 B = 6836.721184 C = 7404.821515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 C -0.118 4.118 4 C 0.065 3.935 5 N -0.685 5.685 6 C 0.492 3.508 7 O -0.582 6.582 8 C 0.087 3.913 9 H 0.110 0.890 10 N -0.817 5.817 11 C -0.081 4.081 12 C 0.039 3.961 13 C -0.543 4.543 14 H 0.055 0.945 15 C 0.002 3.998 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.281 1.281 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.111 4.111 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.411 0.589 32 H 0.347 0.653 33 H 0.345 0.655 34 H 0.041 0.959 35 H 0.065 0.935 36 H -0.005 1.005 37 H 0.006 0.994 38 H 0.262 0.738 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.106 4.193 -10.681 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 C -0.176 4.176 4 C -0.041 4.041 5 N -0.336 5.336 6 C 0.278 3.722 7 O -0.462 6.462 8 C -0.029 4.029 9 H 0.128 0.872 10 N -0.346 5.346 11 C -0.119 4.119 12 C 0.002 3.998 13 C -0.581 4.581 14 H 0.073 0.927 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.784 3.216 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.207 1.207 21 C -0.131 4.131 22 C -0.175 4.175 23 C -0.168 4.168 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.250 0.750 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.013 0.987 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.685 3.915 -10.202 22.515 hybrid contribution 0.302 -0.446 -0.393 0.667 sum -19.383 3.469 -10.595 22.361 Atomic orbital electron populations 1.21343 0.90452 1.02230 1.02868 1.22291 0.95969 0.91532 1.01661 1.21354 0.99847 0.93403 1.02963 1.22166 0.88151 1.02192 0.91590 1.45558 1.23146 1.34226 1.30708 1.22407 0.88159 0.81451 0.80221 1.90621 1.57847 1.31090 1.66622 1.21632 0.90213 1.01628 0.89445 0.87235 1.58978 1.54272 1.11032 1.10328 1.21381 0.93441 0.99172 0.97910 1.18829 0.90615 0.94751 0.95589 1.21745 0.92431 1.31144 1.12744 0.92693 1.25890 1.01913 0.95597 0.96141 1.70114 1.21118 1.39089 1.26655 0.85488 0.79014 0.78311 0.78758 1.18850 1.20228 1.20688 1.22326 0.98575 0.99827 0.92335 1.21309 0.94033 1.02075 1.00034 1.21322 0.98603 0.96870 1.00048 0.91412 0.90557 0.92711 0.93044 0.90600 0.91083 0.86897 0.75027 0.84000 0.84118 0.93979 0.91620 0.98669 0.97547 0.92926 0.92348 0.90480 0.93119 0.92660 0.90392 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 8.88 71.98 0.64 -0.87 16 2 C -0.11 -1.89 2.70 -52.16 -0.14 -2.03 16 3 C -0.12 -1.72 8.82 71.98 0.64 -1.09 16 4 C 0.07 1.50 5.67 44.99 0.26 1.76 16 5 N -0.69 -17.34 4.61 -442.55 -2.04 -19.38 16 6 C 0.49 15.63 7.07 87.66 0.62 16.25 16 7 O -0.58 -21.87 15.82 -3.04 -0.05 -21.91 16 8 C 0.09 2.92 3.15 44.17 0.14 3.06 16 9 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 10 N -0.82 -28.13 8.44 -171.81 -1.45 -29.58 16 11 C -0.08 -3.29 4.78 30.59 0.15 -3.14 16 12 C 0.04 2.05 4.86 29.85 0.15 2.20 16 13 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 14 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.00 0.14 5.46 84.65 0.46 0.60 16 16 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 17 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C -0.13 -2.39 2.70 -52.16 -0.14 -2.53 16 22 C -0.12 -2.16 8.83 71.98 0.64 -1.52 16 23 C -0.11 -1.79 8.88 71.99 0.64 -1.15 16 24 H 0.07 0.82 7.92 -2.39 -0.02 0.81 16 25 H 0.08 0.83 8.02 -2.39 -0.02 0.81 16 26 H 0.05 0.79 7.78 -2.39 -0.02 0.77 16 27 H 0.05 0.80 5.63 -2.38 -0.01 0.79 16 28 H 0.08 0.94 8.03 -2.39 -0.02 0.92 16 29 H 0.07 0.93 7.92 -2.39 -0.02 0.91 16 30 H 0.11 3.07 7.22 -2.39 -0.02 3.05 16 31 H 0.41 9.01 5.42 -92.70 -0.50 8.51 16 32 H 0.35 10.25 9.06 -89.70 -0.81 9.44 16 33 H 0.35 12.20 8.58 -89.69 -0.77 11.43 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 36 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.06 1.12 7.92 -2.39 -0.02 1.10 16 40 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 41 H 0.05 1.01 5.99 -2.39 -0.01 1.00 16 42 H 0.05 0.91 7.78 -2.39 -0.02 0.90 16 43 H 0.08 0.98 8.02 -2.39 -0.02 0.96 16 44 H 0.06 0.97 7.92 -2.39 -0.02 0.95 16 Total: -1.00 -68.32 351.52 1.95 -66.37 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -1.09 Total: 33.51 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 4.27 Total: -19.13 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -3.21 Total: -105.36 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.32 1.95 -66.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.862 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds