Wall clock time and date at job start Mon Mar 30 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47236 * 239.99839 * 3 2 1 5 5 H 1.48499 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47395 * 120.00048 * 3 2 1 7 7 C 1.37881 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00432 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99766 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47301 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99857 * 179.97438 * 10 9 7 12 12 O 1.21581 * 119.99999 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99438 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99675 * 180.02562 * 13 11 10 15 15 C 1.52989 * 109.47058 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47290 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47469 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46817 * 64.99892 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99697 * 17 16 15 23 23 H 0.96995 * 119.99748 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47498 * 59.99527 * 9 7 2 25 25 H 1.09000 * 109.46921 * 299.99814 * 9 7 2 26 26 H 0.96991 * 119.99856 * 359.97438 * 10 9 7 27 27 H 0.96997 * 119.99966 * 0.02562 * 13 11 10 28 28 H 1.08999 * 109.47004 * 59.99949 * 14 13 11 29 29 H 1.09006 * 109.47030 * 300.00407 * 14 13 11 30 30 H 1.08997 * 109.47705 * 59.99499 * 15 14 13 31 31 H 1.09006 * 109.47323 * 299.99971 * 15 14 13 32 32 H 1.09008 * 109.47149 * 59.99652 * 16 15 14 33 33 H 1.08997 * 109.47163 * 299.99722 * 16 15 14 34 34 H 1.09002 * 109.47070 * 305.00072 * 17 16 15 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5585 -5.1055 0.0011 13 7 2.6297 -5.9078 0.0016 14 6 2.1414 -7.2890 0.0016 15 6 3.3313 -8.2506 0.0029 16 6 2.8214 -9.6931 0.0035 17 6 4.0114 -10.6548 0.0042 18 6 4.7910 -10.5005 1.3115 19 6 5.9806 -11.4626 1.3126 20 6 5.4736 -12.9008 1.1877 21 6 4.6940 -13.0551 -0.1196 22 6 3.5048 -12.0931 -0.1208 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0002 27 1 3.5834 -5.7305 0.0020 28 1 1.5362 -7.4604 -0.8886 29 1 1.5354 -7.4601 0.8913 30 1 3.9362 -8.0791 0.8932 31 1 3.9377 -8.0796 -0.8867 32 1 2.2162 -9.8650 -0.8867 33 1 2.2154 -9.8638 0.8933 34 1 4.6646 -10.4251 -0.8377 35 1 5.1519 -9.4759 1.4007 36 1 4.1378 -10.7302 2.1534 37 1 6.5358 -11.3530 2.2442 38 1 6.6340 -11.2333 0.4707 39 1 4.8202 -13.1300 2.0296 40 1 6.3212 -13.5861 1.1880 41 1 4.3332 -14.0797 -0.2088 42 1 5.3473 -12.8257 -0.9615 43 1 2.8517 -12.3227 0.7209 44 1 2.9495 -12.2030 -1.0523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426416635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:44 Heat of formation + Delta-G solvation = -82.566755 kcal Electronic energy + Delta-G solvation = -19841.634382 eV Core-core repulsion = 16791.757523 eV Total energy + Delta-G solvation = -3049.876859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.34673 -38.94490 -35.70745 -34.05856 -33.30407 -32.21833 -31.08245 -29.94103 -27.17595 -25.36699 -23.17760 -22.59477 -21.79470 -20.94295 -20.04945 -19.93252 -17.92554 -16.16969 -15.81217 -15.77221 -15.43907 -14.74730 -14.60346 -14.51852 -14.25667 -13.98142 -13.60478 -13.30058 -12.96219 -12.66782 -12.52720 -12.22628 -11.92688 -11.78547 -11.64614 -11.44365 -11.37858 -11.19077 -10.94511 -10.88685 -10.79806 -10.70218 -10.28890 -10.26894 -10.18779 -9.35568 -9.33746 -8.72348 -8.61194 -7.70048 -6.11953 -4.18471 3.27933 3.31799 3.33596 3.46866 4.02629 4.32642 4.36502 4.39630 4.44857 4.77041 4.84077 4.90348 5.01730 5.11371 5.18558 5.20846 5.22837 5.23772 5.31471 5.37671 5.40197 5.59280 5.60926 5.68076 5.72504 5.80955 5.84126 5.89466 5.94938 5.98170 6.04564 6.13254 6.21277 6.26147 6.95517 7.18223 7.56653 7.60241 7.61729 7.96093 8.09393 8.80616 9.00521 9.38680 9.53155 10.98288 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048712 B = 0.002391 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.668354 B =11708.708037 C =12121.454847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.691 3.309 12 O -0.602 6.602 13 N -0.759 5.759 14 C 0.141 3.859 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.115 4.115 23 H 0.266 0.734 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.386 0.614 27 H 0.390 0.610 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.631 -24.643 0.915 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.391 3.609 12 O -0.482 6.482 13 N -0.416 5.416 14 C 0.016 3.984 15 C -0.169 4.169 16 C -0.150 4.150 17 C -0.104 4.104 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.153 4.153 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.218 0.782 27 H 0.223 0.777 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.299 -24.676 0.916 27.155 hybrid contribution 1.315 1.098 -0.002 1.713 sum 12.614 -23.577 0.914 26.755 Atomic orbital electron populations 1.69972 1.06078 1.27335 1.48919 1.24954 0.94929 0.99393 0.94821 0.86465 0.79383 0.82337 0.78631 1.20113 1.21096 1.20107 1.21198 0.93221 0.90483 1.53126 0.92017 1.18963 0.87808 0.81091 0.97565 1.45713 1.10719 1.04490 1.77385 1.16177 0.85241 0.81093 0.78383 1.90864 1.14320 1.84300 1.58693 1.45176 1.08713 1.05325 1.82424 1.21062 0.95823 0.79645 1.01894 1.21843 0.97955 0.94445 1.02628 1.21547 0.97560 0.93317 1.02592 1.21162 0.96669 0.94472 0.98125 1.21654 0.96883 0.99375 0.97544 1.21543 0.97772 0.94891 1.01597 1.21543 0.99583 0.96752 0.97899 1.21523 0.97343 0.99082 0.97789 1.21582 0.97480 0.94344 1.01878 0.92431 0.95798 0.95785 0.78224 0.77692 0.92203 0.92198 0.91221 0.91491 0.91579 0.91590 0.91225 0.91624 0.91984 0.92203 0.92120 0.92097 0.92364 0.92251 0.92122 0.91971 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.34 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.20 5.55 -66.41 -0.37 -16.57 16 11 C 0.69 14.90 8.57 -86.91 -0.74 14.15 16 12 O -0.60 -15.72 16.34 5.29 0.09 -15.63 16 13 N -0.76 -11.76 5.56 -65.23 -0.36 -12.13 16 14 C 0.14 1.87 5.67 -4.05 -0.02 1.85 16 15 C -0.13 -1.19 5.08 -26.74 -0.14 -1.33 16 16 C -0.11 -0.91 4.68 -26.73 -0.13 -1.03 16 17 C -0.09 -0.61 2.19 -90.62 -0.20 -0.81 16 18 C -0.12 -0.83 4.96 -26.73 -0.13 -0.96 16 19 C -0.12 -0.79 5.92 -26.73 -0.16 -0.94 16 20 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 21 C -0.12 -0.75 5.92 -26.76 -0.16 -0.91 16 22 C -0.12 -0.78 5.20 -26.76 -0.14 -0.92 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.39 7.27 8.33 -40.82 -0.34 6.93 16 27 H 0.39 4.79 8.49 -40.82 -0.35 4.45 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.47 6.57 -51.93 -0.34 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -32.97 350.16 -10.16 -43.13 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.09 Total: 3.78 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.42 Total: 1.83 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.00 Total: -54.49 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.97 -10.16 -43.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.433 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds