Wall clock time and date at job start Mon Mar 30 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47236 * 239.99839 * 3 2 1 5 5 H 1.48499 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47395 * 120.00048 * 3 2 1 7 7 C 1.37881 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00432 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99766 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47301 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99857 * 179.97438 * 10 9 7 12 12 O 1.21581 * 119.99999 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99438 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99675 * 180.02562 * 13 11 10 15 15 C 1.52989 * 109.47058 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47290 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47469 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46817 * 64.99892 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99697 * 17 16 15 23 23 H 0.96995 * 119.99748 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47498 * 59.99527 * 9 7 2 25 25 H 1.09000 * 109.46921 * 299.99814 * 9 7 2 26 26 H 0.96991 * 119.99856 * 359.97438 * 10 9 7 27 27 H 0.96997 * 119.99966 * 0.02562 * 13 11 10 28 28 H 1.08999 * 109.47004 * 59.99949 * 14 13 11 29 29 H 1.09006 * 109.47030 * 300.00407 * 14 13 11 30 30 H 1.08997 * 109.47705 * 59.99499 * 15 14 13 31 31 H 1.09006 * 109.47323 * 299.99971 * 15 14 13 32 32 H 1.09008 * 109.47149 * 59.99652 * 16 15 14 33 33 H 1.08997 * 109.47163 * 299.99722 * 16 15 14 34 34 H 1.09002 * 109.47070 * 305.00072 * 17 16 15 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5585 -5.1055 0.0011 13 7 2.6297 -5.9078 0.0016 14 6 2.1414 -7.2890 0.0016 15 6 3.3313 -8.2506 0.0029 16 6 2.8214 -9.6931 0.0035 17 6 4.0114 -10.6548 0.0042 18 6 4.7910 -10.5005 1.3115 19 6 5.9806 -11.4626 1.3126 20 6 5.4736 -12.9008 1.1877 21 6 4.6940 -13.0551 -0.1196 22 6 3.5048 -12.0931 -0.1208 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0002 27 1 3.5834 -5.7305 0.0020 28 1 1.5362 -7.4604 -0.8886 29 1 1.5354 -7.4601 0.8913 30 1 3.9362 -8.0791 0.8932 31 1 3.9377 -8.0796 -0.8867 32 1 2.2162 -9.8650 -0.8867 33 1 2.2154 -9.8638 0.8933 34 1 4.6646 -10.4251 -0.8377 35 1 5.1519 -9.4759 1.4007 36 1 4.1378 -10.7302 2.1534 37 1 6.5358 -11.3530 2.2442 38 1 6.6340 -11.2333 0.4707 39 1 4.8202 -13.1300 2.0296 40 1 6.3212 -13.5861 1.1880 41 1 4.3332 -14.0797 -0.2088 42 1 5.3473 -12.8257 -0.9615 43 1 2.8517 -12.3227 0.7209 44 1 2.9495 -12.2030 -1.0523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426416635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:44 Heat of formation + Delta-G solvation = -104.160473 kcal Electronic energy + Delta-G solvation = -19842.570756 eV Core-core repulsion = 16791.757523 eV Total energy + Delta-G solvation = -3050.813233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87350 -39.71817 -36.88981 -36.01347 -34.56967 -34.06499 -31.61038 -30.92186 -29.06845 -26.42771 -24.57089 -23.66841 -22.72383 -22.01140 -21.36286 -20.54532 -19.68526 -18.00799 -17.38583 -16.87220 -16.51358 -16.22891 -15.94421 -15.29318 -15.07975 -14.94751 -14.93640 -14.66345 -14.11760 -14.02281 -13.80351 -13.39913 -13.10885 -12.91569 -12.83380 -12.66459 -12.37923 -12.23457 -12.21525 -11.92962 -11.83397 -11.53944 -11.49272 -11.27786 -11.25022 -10.82380 -10.78692 -10.72365 -10.25833 -9.56858 -8.27333 -6.44128 1.44029 1.48848 1.56841 1.92705 2.25210 2.40859 3.07232 3.54694 3.74606 3.84219 3.90203 4.11022 4.13264 4.28566 4.37025 4.52295 4.64705 4.66537 4.68297 4.71413 4.76679 4.84486 4.89528 4.98008 5.10205 5.13210 5.19379 5.23940 5.27406 5.32026 5.32566 5.40490 5.41553 5.47405 5.49817 5.57161 5.59165 5.68686 5.70046 5.85857 6.29490 6.67509 7.25158 7.33863 7.73779 8.84866 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048712 B = 0.002391 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.668354 B =11708.708037 C =12121.454847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.688 3.312 12 O -0.652 6.652 13 N -0.733 5.733 14 C 0.137 3.863 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.080 4.080 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.116 4.116 23 H 0.269 0.731 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.405 0.595 27 H 0.411 0.589 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.433 -24.830 0.859 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.378 5.378 11 C 0.387 3.613 12 O -0.536 6.536 13 N -0.390 5.390 14 C 0.013 3.987 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.099 4.099 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.153 4.153 23 H 0.078 0.922 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.240 0.760 27 H 0.247 0.753 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.190 -24.920 0.861 28.690 hybrid contribution 0.409 1.046 0.019 1.123 sum 14.599 -23.874 0.880 27.998 Atomic orbital electron populations 1.70143 1.08299 1.28642 1.49861 1.26104 0.95825 1.03971 0.93868 0.85162 0.77848 0.76402 0.79500 1.18628 1.21100 1.18615 1.21575 0.94331 0.90435 1.53025 0.89753 1.18404 0.88147 0.83427 0.93872 1.45301 1.10902 1.03842 1.77728 1.16392 0.85183 0.81725 0.77966 1.90830 1.16925 1.85044 1.60756 1.44968 1.09026 1.04803 1.80220 1.21264 0.97653 0.78934 1.00812 1.21757 0.96149 0.93646 1.03804 1.21527 0.98004 0.92828 1.02429 1.21105 0.96129 0.94343 0.98304 1.21655 0.97006 0.99602 0.97217 1.21541 0.97541 0.94863 1.01813 1.21550 0.99756 0.96762 0.97747 1.21519 0.97094 0.99182 0.97856 1.21579 0.97709 0.94262 1.01774 0.92232 0.99771 0.99759 0.75951 0.75256 0.93357 0.93395 0.90051 0.90220 0.91711 0.91939 0.90980 0.91533 0.92467 0.91948 0.91965 0.92366 0.91756 0.91802 0.92002 0.92321 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.99 42.64 29.54 68.60 2.03 44.67 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.16 16 9 C 0.28 16.22 5.43 85.63 0.46 16.68 16 10 N -0.72 -32.21 5.55 -482.29 -2.68 -34.88 16 11 C 0.69 29.87 8.57 179.05 1.53 31.40 16 12 O -0.65 -35.24 16.34 -3.97 -0.06 -35.30 16 13 N -0.73 -21.83 5.56 -478.54 -2.66 -24.49 16 14 C 0.14 3.54 5.67 86.38 0.49 4.03 16 15 C -0.12 -1.86 5.08 30.59 0.16 -1.71 16 16 C -0.11 -1.61 4.68 30.59 0.14 -1.46 16 17 C -0.08 -1.00 2.19 -10.79 -0.02 -1.03 16 18 C -0.12 -1.44 4.96 30.59 0.15 -1.29 16 19 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 20 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 21 C -0.12 -1.30 5.92 30.58 0.18 -1.11 16 22 C -0.12 -1.40 5.20 30.58 0.16 -1.24 16 23 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 26 H 0.41 14.69 8.33 -92.71 -0.77 13.92 16 27 H 0.41 9.03 8.49 -92.71 -0.79 8.25 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.17 6.56 -2.39 -0.02 1.15 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.80 6.57 -2.39 -0.02 0.79 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -73.31 350.16 0.63 -72.67 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.59 Total: 22.02 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 4.32 Total: 12.01 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -5.05 Total: -116.07 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.06 Total: -35.30 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.31 0.63 -72.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.486 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds