Wall clock time and date at job start Mon Mar 30 2020 01:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00161 * 2 1 4 4 H 1.48502 * 109.46796 * 270.00055 * 3 2 1 5 5 H 1.48498 * 109.47030 * 29.99491 * 3 2 1 6 6 H 1.48494 * 109.47116 * 149.99772 * 3 2 1 7 7 C 1.37873 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99722 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00018 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46693 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99636 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99917 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99647 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99884 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47326 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47258 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47400 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47128 * 60.00106 * 9 7 2 25 25 H 1.08998 * 109.46934 * 299.99704 * 9 7 2 26 26 H 0.96999 * 120.00388 * 359.97438 * 10 9 7 27 27 H 0.96999 * 120.00378 * 0.02562 * 13 11 10 28 28 H 1.08999 * 109.46811 * 59.99985 * 14 13 11 29 29 H 1.09005 * 109.47115 * 300.00587 * 14 13 11 30 30 H 1.08999 * 109.47591 * 59.99970 * 15 14 13 31 31 H 1.09000 * 109.47025 * 299.99635 * 15 14 13 32 32 H 1.09001 * 109.47169 * 60.00211 * 16 15 14 33 33 H 1.09000 * 109.46864 * 299.99807 * 16 15 14 34 34 H 1.08995 * 109.46922 * 59.99869 * 17 16 15 35 35 H 1.09000 * 109.47141 * 299.99866 * 17 16 15 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1150 -1.8974 0.0014 13 7 5.7741 -4.0923 0.0013 14 6 7.2144 -4.3601 0.0018 15 6 7.4522 -5.8714 0.0016 16 6 8.9565 -6.1510 0.0015 17 6 9.1943 -7.6624 0.0019 18 6 10.6985 -7.9420 0.0024 19 6 11.3259 -7.5923 1.3754 20 6 12.6041 -8.4540 1.4368 21 6 12.3811 -9.6414 0.4840 22 6 10.9745 -9.4610 -0.1234 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8889 26 1 3.3694 -3.3126 0.0010 27 1 5.1437 -4.8295 0.0013 28 1 7.6653 -3.9211 0.8919 29 1 7.6659 -3.9214 -0.8881 30 1 7.0015 -6.3100 -0.8886 31 1 7.0008 -6.3103 0.8913 32 1 9.4076 -5.7124 0.8915 33 1 9.4075 -5.7121 -0.8885 34 1 8.7431 -8.1014 -0.8879 35 1 8.7433 -8.1010 0.8921 36 1 11.1924 -7.3920 -0.7987 37 1 10.6463 -7.8597 2.1845 38 1 11.5776 -6.5327 1.4220 39 1 12.7624 -8.8153 2.4530 40 1 13.4643 -7.8697 1.1104 41 1 13.1326 -9.6329 -0.3054 42 1 12.4320 -10.5791 1.0375 43 1 10.9694 -9.7642 -1.1704 44 1 10.2386 -10.0326 0.4419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426427849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:22 Heat of formation + Delta-G solvation = -76.586734 kcal Electronic energy + Delta-G solvation = -19528.282034 eV Core-core repulsion = 16478.664488 eV Total energy + Delta-G solvation = -3049.617546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.31825 -38.82063 -36.06608 -34.22068 -33.62641 -32.28909 -30.51761 -29.04092 -27.94836 -26.39303 -23.29782 -21.86336 -21.52626 -20.51387 -20.21287 -20.09899 -18.09545 -16.36027 -16.29089 -15.89971 -15.78717 -15.30371 -14.81944 -14.38866 -14.05389 -13.87516 -13.64667 -13.23927 -13.13601 -12.69164 -12.51256 -12.27790 -12.20125 -11.77264 -11.58167 -11.45471 -11.38026 -10.97243 -10.96232 -10.87731 -10.77537 -10.72446 -10.67219 -10.60469 -9.93388 -9.54743 -9.41991 -8.80935 -8.71024 -7.96075 -6.18040 -4.19670 3.28784 3.32344 3.39058 3.46445 3.86728 4.18130 4.27998 4.34334 4.37244 4.68813 4.76242 4.85601 5.01551 5.07845 5.08915 5.16952 5.17631 5.27496 5.30113 5.32442 5.39657 5.47062 5.58108 5.58723 5.64119 5.69085 5.75577 5.82414 5.86663 5.94295 6.00901 6.07790 6.14985 6.18212 6.78736 6.84605 7.15780 7.29217 7.45447 7.62863 8.32158 8.73396 8.85911 9.26401 9.44197 10.93938 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.062526 B = 0.002228 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.704847 B =12566.023027 C =12844.832723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.605 6.605 13 N -0.757 5.757 14 C 0.140 3.860 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.094 4.094 19 C -0.121 4.121 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.122 4.122 23 H 0.267 0.733 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.392 0.608 27 H 0.393 0.607 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.970 -20.199 0.821 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.485 6.485 13 N -0.414 5.414 14 C 0.016 3.984 15 C -0.169 4.169 16 C -0.154 4.154 17 C -0.148 4.148 18 C -0.112 4.112 19 C -0.158 4.158 20 C -0.164 4.164 21 C -0.164 4.164 22 C -0.159 4.159 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.225 0.775 27 H 0.226 0.774 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.521 -19.174 0.829 29.589 hybrid contribution -0.285 0.167 -0.020 0.331 sum 22.236 -19.006 0.809 29.263 Atomic orbital electron populations 1.69885 1.06201 1.27376 1.49664 1.24788 0.94798 0.99180 0.93921 0.86804 0.80606 0.83158 0.79053 1.19858 1.20952 1.18432 1.21106 0.88604 0.95185 1.53075 0.90308 1.19351 0.94777 0.77743 0.96613 1.45396 1.03766 1.11000 1.77463 1.16142 0.83519 0.82787 0.78246 1.90857 1.55447 1.43289 1.58912 1.45141 1.07630 1.06513 1.82103 1.21084 0.80690 0.94713 1.01951 1.21806 0.97058 0.95360 1.02640 1.21509 0.95233 0.96049 1.02613 1.21583 0.95102 0.96016 1.02095 1.22180 0.95614 0.95741 0.97660 1.22460 0.96537 0.99624 0.97210 1.22142 0.98195 0.96660 0.99452 1.22129 0.97239 0.98309 0.98675 1.22424 0.96646 0.96210 1.00630 0.92307 0.95938 0.96399 0.77495 0.77436 0.92113 0.92120 0.91400 0.91399 0.91553 0.91677 0.91902 0.91860 0.90651 0.91550 0.91605 0.92067 0.92026 0.92062 0.92090 0.91856 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.54 -15.17 9.83 -34.44 -0.34 -15.50 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.24 6.07 4.50 -5.19 -0.02 6.05 16 10 N -0.72 -15.39 5.55 -66.41 -0.37 -15.76 16 11 C 0.69 14.21 8.57 -86.92 -0.74 13.46 16 12 O -0.61 -14.89 16.34 5.29 0.09 -14.80 16 13 N -0.76 -11.20 5.56 -65.22 -0.36 -11.56 16 14 C 0.14 1.77 5.67 -4.04 -0.02 1.75 16 15 C -0.13 -1.13 5.33 -26.74 -0.14 -1.27 16 16 C -0.12 -0.88 5.11 -26.73 -0.14 -1.02 16 17 C -0.11 -0.73 4.72 -26.73 -0.13 -0.86 16 18 C -0.09 -0.61 2.86 -88.59 -0.25 -0.86 16 19 C -0.12 -0.79 5.71 -25.03 -0.14 -0.94 16 20 C -0.13 -0.78 6.80 -25.61 -0.17 -0.95 16 21 C -0.13 -0.74 6.80 -25.62 -0.17 -0.92 16 22 C -0.12 -0.74 6.27 -25.07 -0.16 -0.90 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 25 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 26 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 27 H 0.39 4.61 8.49 -40.82 -0.35 4.26 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.42 8.00 -51.93 -0.42 0.01 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.44 7.95 -51.93 -0.41 0.03 16 38 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -32.92 352.48 -9.93 -42.86 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.17 Total: 2.71 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.53 Total: 0.13 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.04 Total: -53.38 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.92 -9.93 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.731 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds