Wall clock time and date at job start Mon Mar 30 2020 01:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.53005 * 109.47159 * 300.00546 * 4 2 1 6 6 C 1.52997 * 109.46733 * 299.99162 * 5 4 2 7 7 C 1.53002 * 109.46965 * 60.00506 * 6 5 4 8 8 H 1.09000 * 109.47312 * 59.99663 * 7 6 5 9 9 N 1.46496 * 109.47030 * 179.97438 * 7 6 5 10 10 C 1.34785 * 119.99787 * 274.99395 * 9 7 6 11 11 O 1.21581 * 119.99808 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99580 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99530 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47219 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47213 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00368 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99815 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00118 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00140 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47033 * 89.99838 * 19 17 15 21 21 H 1.48495 * 109.47136 * 209.99847 * 19 17 15 22 22 H 1.48503 * 109.47088 * 329.99925 * 19 17 15 23 23 C 1.52997 * 109.47092 * 299.99543 * 7 6 5 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 33 33 H 1.08992 * 109.47061 * 59.99386 * 5 4 2 34 34 H 1.09000 * 109.47380 * 300.00211 * 6 5 4 35 35 H 1.09004 * 109.46976 * 180.02562 * 6 5 4 36 36 H 0.96997 * 120.00588 * 95.00484 * 9 7 6 37 37 H 0.96996 * 120.00831 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47612 * 300.00362 * 13 12 10 39 39 H 1.09009 * 109.46944 * 60.00572 * 13 12 10 40 40 H 1.09003 * 109.46865 * 300.00266 * 14 13 12 41 41 H 1.09000 * 109.46967 * 60.00120 * 14 13 12 42 42 H 0.97000 * 120.00362 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47140 * 300.00226 * 23 7 6 44 44 H 1.09001 * 109.47375 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 7 2.0179 -2.8548 2.4453 10 6 1.3405 -3.9114 2.9365 11 8 0.3249 -4.2914 2.3867 12 7 1.7891 -4.5467 4.0372 13 6 1.0531 -5.6956 4.5709 14 6 1.7693 -6.2274 5.8140 15 6 1.0126 -7.4095 6.3626 16 1 0.1113 -7.7481 5.8733 17 6 1.4710 -8.0589 7.4891 18 7 0.8104 -9.0903 7.9682 19 14 3.0303 -7.4738 8.3351 20 1 2.6849 -6.4594 9.3632 21 1 3.7038 -8.6271 8.9843 22 1 3.9418 -6.8697 7.3303 23 6 2.0400 -0.7214 1.2492 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 1.8929 -2.6774 -2.1395 33 1 0.4400 -2.1637 -1.2492 34 1 3.1300 -2.8851 -0.0001 35 1 1.6770 -3.9129 -0.0003 36 1 2.8282 -2.5518 2.8839 37 1 2.5992 -4.2434 4.4761 38 1 0.0424 -5.3874 4.8382 39 1 1.0059 -6.4798 3.8151 40 1 2.7802 -6.5356 5.5470 41 1 1.8162 -5.4432 6.5696 42 1 1.1326 -9.5470 8.7610 43 1 3.1300 -0.7214 1.2492 44 1 1.6771 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443171749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:30 Heat of formation + Delta-G solvation = -67.776499 kcal Electronic energy + Delta-G solvation = -20782.768417 eV Core-core repulsion = 17733.532911 eV Total energy + Delta-G solvation = -3049.235506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34411 -38.96289 -35.23049 -34.41879 -32.90758 -32.55501 -30.46076 -29.03995 -27.60887 -26.59672 -24.81211 -22.61250 -21.55429 -20.71682 -20.42882 -18.84790 -17.76510 -16.86957 -16.27505 -15.32768 -15.04592 -14.95433 -14.57324 -14.35197 -14.08022 -13.88769 -13.61263 -13.43421 -13.16977 -12.75780 -12.58201 -12.33910 -12.17121 -11.71825 -11.64589 -11.45930 -11.35324 -11.19430 -11.16264 -10.74985 -10.46053 -10.33943 -10.23743 -10.21809 -9.95069 -9.68245 -9.29932 -8.97390 -8.60783 -8.33638 -6.09161 -4.08988 3.01572 3.26372 3.33879 3.35343 3.57897 4.35920 4.39300 4.41030 4.44956 4.69039 4.88951 4.91261 5.11364 5.12836 5.23769 5.23828 5.26313 5.39208 5.41891 5.44118 5.58852 5.67298 5.69585 5.80028 5.81114 5.91314 6.00191 6.01727 6.10350 6.12349 6.19985 6.28242 6.33436 6.60902 6.70294 6.86694 7.10185 7.27638 7.35420 7.69898 8.35811 8.48926 8.95081 8.98560 9.51059 11.03968 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041704 B = 0.003118 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.241864 B = 8979.202874 C = 9204.040820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.164 3.836 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.699 3.301 11 O -0.595 6.595 12 N -0.744 5.744 13 C 0.149 3.851 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.115 4.115 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.391 0.609 37 H 0.391 0.609 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.264 0.736 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 21.303 -16.863 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.058 3.942 8 H 0.108 0.892 9 N -0.406 5.406 10 C 0.399 3.601 11 O -0.473 6.473 12 N -0.397 5.397 13 C 0.026 3.974 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.154 4.154 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.225 0.775 37 H 0.223 0.777 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.976 20.768 -17.201 27.422 hybrid contribution 1.628 0.423 1.045 1.980 sum 6.604 21.191 -16.157 27.454 Atomic orbital electron populations 1.22024 0.94393 1.02563 1.01668 1.20469 0.95952 0.94953 0.94694 1.21858 1.00878 0.95259 1.01801 1.21631 1.00491 0.95533 0.96982 1.21546 1.01370 0.95196 0.97593 1.21957 1.00615 1.00259 0.94113 1.20794 1.00053 0.89960 0.83362 0.89211 1.45245 1.30130 1.33729 1.31452 1.16057 0.83260 0.79887 0.80903 1.90892 1.26043 1.68286 1.62079 1.45531 1.30371 1.34812 1.29008 1.21357 0.95122 0.84845 0.96094 1.19794 0.96702 0.96899 0.92533 1.20929 1.11454 1.12071 1.11539 0.90586 1.25003 0.96960 0.94620 0.96741 1.69907 1.39644 1.20872 1.23340 0.86743 0.83903 0.78444 0.79914 1.20256 1.21308 1.19109 1.21870 1.00873 0.94535 0.98076 0.92688 0.92638 0.91639 0.92609 0.92706 0.92585 0.91951 0.91984 0.91904 0.91390 0.92139 0.91210 0.77549 0.77664 0.92232 0.92211 0.96070 0.96498 0.92575 0.91535 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.78 37.16 0.29 -0.90 16 2 C -0.06 -0.44 0.77 -154.51 -0.12 -0.56 16 3 C -0.14 -0.88 8.47 37.15 0.31 -0.57 16 4 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16 5 C -0.12 -1.04 5.65 -26.73 -0.15 -1.19 16 6 C -0.13 -1.40 5.49 -26.73 -0.15 -1.55 16 7 C 0.16 1.82 2.18 -67.93 -0.15 1.67 16 8 H 0.09 1.21 5.86 -51.93 -0.30 0.90 16 9 N -0.75 -9.30 5.08 -58.68 -0.30 -9.60 16 10 C 0.70 12.01 8.53 -86.91 -0.74 11.26 16 11 O -0.59 -12.67 16.00 5.29 0.08 -12.59 16 12 N -0.74 -12.68 5.56 -65.22 -0.36 -13.04 16 13 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 14 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 15 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 16 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 19 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 23 C -0.12 -0.96 4.20 -26.73 -0.11 -1.07 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.39 3.73 8.62 -40.82 -0.35 3.38 16 37 H 0.39 5.50 8.49 -40.82 -0.35 5.16 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 40 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 41 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -32.64 340.79 -8.70 -41.34 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.86 Total: 3.59 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.51 Total: -4.56 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.11 Total: -49.44 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.64 -8.70 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443171749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.438 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds