Wall clock time and date at job start Mon Mar 30 2020 01:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.53005 * 109.47159 * 300.00546 * 4 2 1 6 6 C 1.52997 * 109.46733 * 299.99162 * 5 4 2 7 7 C 1.53002 * 109.46965 * 60.00506 * 6 5 4 8 8 H 1.09000 * 109.47312 * 59.99663 * 7 6 5 9 9 N 1.46496 * 109.47030 * 179.97438 * 7 6 5 10 10 C 1.34785 * 119.99787 * 274.99395 * 9 7 6 11 11 O 1.21581 * 119.99808 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99580 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99530 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47219 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47213 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00368 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99815 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00118 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00140 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47033 * 89.99838 * 19 17 15 21 21 H 1.48495 * 109.47136 * 209.99847 * 19 17 15 22 22 H 1.48503 * 109.47088 * 329.99925 * 19 17 15 23 23 C 1.52997 * 109.47092 * 299.99543 * 7 6 5 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 33 33 H 1.08992 * 109.47061 * 59.99386 * 5 4 2 34 34 H 1.09000 * 109.47380 * 300.00211 * 6 5 4 35 35 H 1.09004 * 109.46976 * 180.02562 * 6 5 4 36 36 H 0.96997 * 120.00588 * 95.00484 * 9 7 6 37 37 H 0.96996 * 120.00831 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47612 * 300.00362 * 13 12 10 39 39 H 1.09009 * 109.46944 * 60.00572 * 13 12 10 40 40 H 1.09003 * 109.46865 * 300.00266 * 14 13 12 41 41 H 1.09000 * 109.46967 * 60.00120 * 14 13 12 42 42 H 0.97000 * 120.00362 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47140 * 300.00226 * 23 7 6 44 44 H 1.09001 * 109.47375 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 7 2.0179 -2.8548 2.4453 10 6 1.3405 -3.9114 2.9365 11 8 0.3249 -4.2914 2.3867 12 7 1.7891 -4.5467 4.0372 13 6 1.0531 -5.6956 4.5709 14 6 1.7693 -6.2274 5.8140 15 6 1.0126 -7.4095 6.3626 16 1 0.1113 -7.7481 5.8733 17 6 1.4710 -8.0589 7.4891 18 7 0.8104 -9.0903 7.9682 19 14 3.0303 -7.4738 8.3351 20 1 2.6849 -6.4594 9.3632 21 1 3.7038 -8.6271 8.9843 22 1 3.9418 -6.8697 7.3303 23 6 2.0400 -0.7214 1.2492 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 1.8929 -2.6774 -2.1395 33 1 0.4400 -2.1637 -1.2492 34 1 3.1300 -2.8851 -0.0001 35 1 1.6770 -3.9129 -0.0003 36 1 2.8282 -2.5518 2.8839 37 1 2.5992 -4.2434 4.4761 38 1 0.0424 -5.3874 4.8382 39 1 1.0059 -6.4798 3.8151 40 1 2.7802 -6.5356 5.5470 41 1 1.8162 -5.4432 6.5696 42 1 1.1326 -9.5470 8.7610 43 1 3.1300 -0.7214 1.2492 44 1 1.6771 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443171749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:30 Heat of formation + Delta-G solvation = -90.193869 kcal Electronic energy + Delta-G solvation = -20783.740507 eV Core-core repulsion = 17733.532911 eV Total energy + Delta-G solvation = -3050.207596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39396 -40.03287 -36.74287 -35.67192 -34.79111 -33.50555 -32.07962 -30.20076 -28.19373 -27.23791 -26.67604 -23.52316 -22.73742 -22.36528 -21.59074 -19.85551 -19.00690 -18.72667 -17.42155 -16.65288 -16.34262 -16.04395 -15.70701 -15.53879 -15.30455 -15.09216 -14.95728 -14.57437 -14.34351 -14.14652 -13.50856 -13.34013 -13.05922 -12.91895 -12.75588 -12.42565 -12.33011 -12.20117 -12.15401 -12.05470 -11.84979 -11.75628 -11.60369 -11.47127 -11.15490 -11.06197 -10.95481 -10.78550 -10.28587 -9.70533 -8.29733 -6.37173 1.39320 1.42315 1.53631 1.76207 2.18558 2.37370 3.05238 3.34556 3.67275 3.76887 3.93758 4.14811 4.18684 4.34475 4.39472 4.43605 4.45064 4.48838 4.57424 4.73348 4.75766 4.81411 4.85857 4.98184 5.07448 5.08807 5.10047 5.14997 5.19491 5.22994 5.27067 5.37838 5.41708 5.45203 5.45715 5.50912 5.62529 5.65782 5.68460 6.08107 6.23757 6.70232 7.17930 7.27354 7.63722 8.87233 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041704 B = 0.003118 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.241864 B = 8979.202874 C = 9204.040820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.058 4.058 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.161 3.839 8 H 0.062 0.938 9 N -0.729 5.729 10 C 0.696 3.304 11 O -0.641 6.641 12 N -0.733 5.733 13 C 0.165 3.835 14 C -0.010 4.010 15 C -0.540 4.540 16 H 0.028 0.972 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.236 1.236 23 C -0.107 4.107 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.410 0.590 37 H 0.410 0.590 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.268 0.732 43 H 0.085 0.915 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 24.287 -17.122 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.059 4.059 3 C -0.194 4.194 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.165 4.165 7 C 0.056 3.944 8 H 0.080 0.920 9 N -0.384 5.384 10 C 0.396 3.604 11 O -0.523 6.523 12 N -0.388 5.388 13 C 0.040 3.960 14 C -0.048 4.048 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.783 3.217 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.159 1.159 23 C -0.145 4.145 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.247 0.753 37 H 0.246 0.754 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.219 23.815 -17.482 30.665 hybrid contribution 0.512 -0.545 1.053 1.292 sum 8.732 23.270 -16.428 29.793 Atomic orbital electron populations 1.22026 0.95227 1.01423 1.02045 1.20480 0.95273 0.95878 0.94275 1.21818 1.01424 0.93963 1.02194 1.21610 1.01096 0.94049 0.97354 1.21530 1.00758 0.96450 0.96763 1.21898 1.01284 0.98388 0.94950 1.20922 0.98728 0.91863 0.82847 0.91975 1.45088 1.30052 1.31899 1.31407 1.16224 0.82969 0.80606 0.80606 1.90869 1.28324 1.69769 1.63355 1.45128 1.30732 1.33761 1.29185 1.20854 0.94506 0.85625 0.94987 1.19633 0.96568 0.95287 0.93322 1.21260 1.10652 1.14092 1.11837 0.95398 1.26102 1.01303 0.94486 0.97485 1.70081 1.42153 1.22687 1.24236 0.85507 0.78830 0.78169 0.79161 1.18944 1.21255 1.15936 1.21839 1.01908 0.92001 0.98755 0.91723 0.92883 0.93544 0.92584 0.91770 0.91929 0.90815 0.90839 0.91174 0.92499 0.90718 0.94805 0.75319 0.75408 0.94256 0.94299 0.94468 0.94573 0.92308 0.89613 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 7.78 71.98 0.56 -1.68 16 2 C -0.06 -0.72 0.77 -52.18 -0.04 -0.76 16 3 C -0.14 -1.27 8.47 71.98 0.61 -0.66 16 4 C -0.10 -1.23 4.73 30.60 0.14 -1.09 16 5 C -0.12 -1.93 5.65 30.59 0.17 -1.75 16 6 C -0.13 -2.63 5.49 30.59 0.17 -2.47 16 7 C 0.16 3.45 2.18 44.99 0.10 3.55 16 8 H 0.06 1.72 5.86 -2.39 -0.01 1.71 16 9 N -0.73 -17.00 5.08 -457.82 -2.33 -19.32 16 10 C 0.70 23.71 8.53 179.05 1.53 25.24 16 11 O -0.64 -28.28 16.00 -3.97 -0.06 -28.34 16 12 N -0.73 -24.11 5.56 -478.51 -2.66 -26.77 16 13 C 0.16 7.02 5.61 86.38 0.48 7.50 16 14 C -0.01 -0.46 4.16 29.85 0.12 -0.34 16 15 C -0.54 -31.32 9.66 25.60 0.25 -31.07 16 16 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 17 C 0.00 0.19 5.47 84.65 0.46 0.65 16 18 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 19 Si 0.96 42.53 27.47 68.60 1.88 44.42 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 23 C -0.11 -1.50 4.20 30.60 0.13 -1.37 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.87 4.81 -2.38 -0.01 0.86 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.06 6.43 -2.39 -0.02 1.05 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.41 6.58 8.62 -92.71 -0.80 5.78 16 37 H 0.41 10.33 8.49 -92.71 -0.79 9.54 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 41 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 42 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.11 340.79 1.16 -72.95 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.66 Total: 20.93 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.69 Total: -4.26 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -4.69 Total: -105.70 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.42 kcal Total: -74.11 1.16 -72.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443171749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.242 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds