Wall clock time and date at job start Mon Mar 30 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47294 * 2 1 4 4 C 1.52996 * 109.47493 * 120.00413 * 2 1 3 5 5 C 1.53000 * 109.47188 * 59.99522 * 4 2 1 6 6 C 1.52998 * 109.46819 * 60.00428 * 5 4 2 7 7 C 1.52999 * 109.47218 * 299.99592 * 6 5 4 8 8 H 1.08997 * 109.47326 * 300.00617 * 7 6 5 9 9 N 1.46505 * 109.47386 * 179.97438 * 7 6 5 10 10 C 1.34781 * 119.99511 * 85.00366 * 9 7 6 11 11 O 1.21584 * 119.99970 * 359.97438 * 10 9 7 12 12 N 1.34771 * 119.99489 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46838 * 89.99826 * 19 17 15 21 21 H 1.48497 * 109.47419 * 209.99978 * 19 17 15 22 22 H 1.48499 * 109.47011 * 330.00539 * 19 17 15 23 23 C 1.52998 * 109.47047 * 240.00312 * 2 1 3 24 24 H 1.09000 * 109.47194 * 299.99750 * 1 2 3 25 25 H 1.08999 * 109.47353 * 59.99469 * 1 2 3 26 26 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47363 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47354 * 300.00531 * 3 2 1 29 29 H 1.09009 * 109.46991 * 60.00101 * 3 2 1 30 30 H 1.09000 * 109.46767 * 300.00098 * 4 2 1 31 31 H 1.08997 * 109.47506 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.47363 * 300.00658 * 5 4 2 33 33 H 1.08999 * 109.47354 * 180.02562 * 5 4 2 34 34 H 1.09004 * 109.47371 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47476 * 60.00118 * 6 5 4 36 36 H 0.97003 * 120.00113 * 265.00615 * 9 7 6 37 37 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 39 39 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 40 40 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 42 42 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.47476 * 180.02562 * 23 2 1 44 44 H 1.09001 * 109.47323 * 59.99693 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2491 6 6 2.0400 -2.8850 -0.0001 7 6 1.5299 -2.1637 -1.2493 8 1 0.4400 -2.1637 -1.2493 9 7 2.0187 -2.8539 -2.4456 10 6 1.3423 -3.9109 -2.9374 11 8 0.3268 -4.2918 -2.3880 12 7 1.7923 -4.5461 -4.0376 13 6 1.0567 -5.6947 -4.5725 14 6 1.7744 -6.2263 -5.8146 15 6 1.0182 -7.4082 -6.3645 16 1 0.1157 -7.7460 -5.8770 17 6 1.4779 -8.0575 -7.4906 18 7 2.5768 -7.6458 -8.0845 19 14 0.5409 -9.5229 -8.1718 20 1 -0.4656 -9.0523 -9.1571 21 1 1.4897 -10.4509 -8.8381 22 1 -0.1464 -10.2304 -7.0618 23 6 2.0400 -0.7212 -1.2493 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 -0.2075 2.1391 31 1 3.1300 -0.7209 1.2494 32 1 0.4401 -2.1638 1.2491 33 1 1.8930 -2.6776 2.1393 34 1 1.6763 -3.9125 -0.0005 35 1 3.1300 -2.8850 -0.0002 36 1 2.8292 -2.5502 -2.8837 37 1 2.6026 -4.2425 -4.4757 38 1 1.0082 -6.4789 -3.8169 39 1 0.0465 -5.3860 -4.8412 40 1 1.8227 -5.4420 -6.5700 41 1 2.7848 -6.5349 -5.5464 42 1 2.9000 -8.1024 -8.8770 43 1 3.1299 -0.7216 -1.2491 44 1 1.6766 -0.2073 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443171750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:33 Heat of formation + Delta-G solvation = -72.077140 kcal Electronic energy + Delta-G solvation = -20728.665860 eV Core-core repulsion = 17679.243865 eV Total energy + Delta-G solvation = -3049.421995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28573 -38.88754 -35.11287 -34.33499 -32.90931 -32.54268 -30.17793 -28.72067 -27.57765 -26.55826 -24.69328 -22.60887 -21.59898 -20.80951 -20.35804 -18.81037 -17.71964 -16.43370 -16.14497 -15.25346 -14.97053 -14.89603 -14.59915 -14.40216 -14.18254 -13.79586 -13.45865 -13.37011 -13.01377 -12.70991 -12.31126 -12.24484 -12.13514 -11.67745 -11.60350 -11.29797 -11.15998 -11.15491 -11.00983 -10.71126 -10.61097 -10.41938 -10.26726 -10.19283 -9.84580 -9.51163 -9.22965 -8.90419 -8.45718 -8.19616 -6.07255 -4.09687 3.10167 3.31125 3.37158 3.42013 3.66100 4.39089 4.40949 4.46384 4.51701 4.78386 4.93206 4.95421 5.14954 5.16962 5.27644 5.29873 5.30579 5.42367 5.45724 5.47845 5.62285 5.71021 5.73057 5.83254 5.84362 5.95795 6.04265 6.05208 6.15770 6.20522 6.33743 6.39268 6.43788 6.75425 6.82319 7.06045 7.32226 7.60465 7.66398 7.92359 8.29132 8.50919 8.95709 9.07514 9.54939 11.04485 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048104 B = 0.002915 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.938386 B = 9604.020031 C = 9757.498556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.164 3.836 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.698 3.302 11 O -0.599 6.599 12 N -0.740 5.740 13 C 0.141 3.859 14 C 0.013 3.987 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.392 0.608 37 H 0.392 0.608 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 17.754 16.900 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.170 4.170 7 C 0.059 3.941 8 H 0.107 0.893 9 N -0.406 5.406 10 C 0.398 3.602 11 O -0.478 6.478 12 N -0.393 5.393 13 C 0.018 3.982 14 C -0.025 4.025 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.154 4.154 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.225 0.775 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.992 17.318 17.231 24.450 hybrid contribution 0.434 -0.544 -0.940 1.170 sum 1.427 16.774 16.291 23.426 Atomic orbital electron populations 1.22021 0.94429 1.02540 1.01634 1.20470 0.95925 0.94955 0.94725 1.21860 1.00894 0.95261 1.01774 1.21626 1.00505 0.95524 0.96964 1.21544 1.01332 0.95207 0.97605 1.21958 1.00638 1.00240 0.94116 1.20783 0.99985 0.89963 0.83415 0.89283 1.45247 1.30183 1.33747 1.31411 1.16089 0.83241 0.79880 0.80973 1.90874 1.26198 1.68419 1.62265 1.45541 1.30322 1.34668 1.28808 1.21568 0.95173 0.84698 0.96793 1.19320 0.96110 0.96278 0.90746 1.21063 1.10136 1.13507 1.11168 0.92226 1.24999 0.95062 0.97589 0.96686 1.69962 1.21876 1.41137 1.20438 0.86510 0.79579 0.82279 0.79179 1.20566 1.21190 1.19714 1.21873 1.00901 0.94560 0.98034 0.92720 0.92649 0.91655 0.92692 0.92600 0.92625 0.91993 0.91973 0.91429 0.91940 0.91242 0.92115 0.77497 0.77472 0.92857 0.92870 0.96010 0.96001 0.92887 0.91505 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.78 37.16 0.29 -0.94 16 2 C -0.06 -0.46 0.77 -154.51 -0.12 -0.58 16 3 C -0.14 -0.93 8.47 37.16 0.31 -0.61 16 4 C -0.11 -0.82 4.73 -26.73 -0.13 -0.95 16 5 C -0.12 -1.07 5.65 -26.73 -0.15 -1.23 16 6 C -0.13 -1.46 5.49 -26.73 -0.15 -1.61 16 7 C 0.16 1.91 2.18 -67.92 -0.15 1.76 16 8 H 0.09 1.24 5.86 -51.93 -0.30 0.93 16 9 N -0.75 -9.84 5.08 -58.67 -0.30 -10.14 16 10 C 0.70 12.53 8.53 -86.92 -0.74 11.79 16 11 O -0.60 -13.09 16.01 5.29 0.08 -13.01 16 12 N -0.74 -13.45 5.56 -65.22 -0.36 -13.81 16 13 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 14 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.12 -1.01 4.20 -26.73 -0.11 -1.12 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.39 4.07 8.62 -40.82 -0.35 3.72 16 37 H 0.39 6.13 8.49 -40.82 -0.35 5.79 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -31.92 344.39 -9.08 -41.00 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.89 Total: 3.47 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.52 Total: -3.61 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.08 Total: -49.59 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.92 -9.08 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443171750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.081 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds