Wall clock time and date at job start Mon Mar 30 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.01225 * 2 1 4 4 C 1.54265 * 110.03201 * 238.56112 * 2 1 3 5 5 C 1.54890 * 104.19358 * 264.32143 * 4 2 1 6 6 C 1.54894 * 102.74813 * 322.05537 * 5 4 2 7 7 C 1.53870 * 110.03559 * 121.38753 * 2 1 3 8 8 H 1.09000 * 110.03284 * 359.95832 * 7 2 1 9 9 C 1.52997 * 110.03686 * 238.57254 * 7 2 1 10 10 N 1.46505 * 109.47212 * 175.00000 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00541 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99511 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46736 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47033 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99890 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00276 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46777 * 90.00321 * 20 18 16 22 22 H 1.48503 * 109.47030 * 210.00105 * 20 18 16 23 23 H 1.48492 * 109.47275 * 330.00654 * 20 18 16 24 24 H 1.09000 * 109.46962 * 298.60451 * 1 2 3 25 25 H 1.08996 * 109.47592 * 58.60836 * 1 2 3 26 26 H 1.09003 * 109.46998 * 178.61425 * 1 2 3 27 27 H 1.09006 * 109.47138 * 181.39369 * 3 2 1 28 28 H 1.09003 * 109.47358 * 301.39066 * 3 2 1 29 29 H 1.09003 * 109.47732 * 61.39482 * 3 2 1 30 30 H 1.09000 * 110.48786 * 22.99936 * 4 2 1 31 31 H 1.09002 * 110.48255 * 145.51207 * 4 2 1 32 32 H 1.08998 * 110.75426 * 80.37434 * 5 4 2 33 33 H 1.09001 * 110.75430 * 203.55756 * 5 4 2 34 34 H 1.08994 * 110.48714 * 279.26294 * 6 5 4 35 35 H 1.08998 * 110.48108 * 156.61627 * 6 5 4 36 36 H 1.09002 * 109.47153 * 54.99992 * 9 7 2 37 37 H 1.09001 * 109.46832 * 295.00183 * 9 7 2 38 38 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 39 39 H 0.97003 * 120.00377 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.47121 * 299.99693 * 14 13 11 41 41 H 1.08994 * 109.47503 * 60.00345 * 14 13 11 42 42 H 1.08994 * 109.47144 * 299.99776 * 15 14 13 43 43 H 1.09004 * 109.46808 * 60.00030 * 15 14 13 44 44 H 0.96998 * 120.00482 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0584 -0.7559 -1.2366 5 6 2.3281 -2.1904 -0.7182 6 6 2.8876 -1.9402 0.7043 7 6 2.0572 -0.7529 1.2340 8 1 1.2230 -1.1177 1.8334 9 6 2.9409 0.1714 2.0741 10 7 3.3384 -0.5182 3.3040 11 6 4.1247 0.1067 4.2027 12 8 4.5038 1.2427 3.9930 13 7 4.4908 -0.5279 5.3340 14 6 5.3452 0.1515 6.3112 15 6 5.6089 -0.7822 7.4943 16 6 6.4882 -0.0836 8.4992 17 1 6.8249 0.9255 8.3129 18 6 6.8619 -0.7324 9.6570 19 7 6.4515 -1.9610 9.8841 20 14 7.9513 0.1338 10.9030 21 1 7.1031 0.8626 11.8800 22 1 8.7798 -0.8698 11.6185 23 1 8.8370 1.0971 10.2011 24 1 -0.3633 0.4920 0.9022 25 1 -0.3634 0.5353 -0.8772 26 1 -0.3633 -1.0274 -0.0249 27 1 3.1433 1.4274 -0.0250 28 1 1.6750 1.9622 -0.8773 29 1 1.7157 1.9475 0.9022 30 1 1.3061 -0.7704 -2.0251 31 1 2.9798 -0.2992 -1.5979 32 1 1.4032 -2.7654 -0.6740 33 1 3.0652 -2.6947 -1.3431 34 1 3.9441 -1.6762 0.6578 35 1 2.7402 -2.8190 1.3321 36 1 2.3851 1.0743 2.3271 37 1 3.8305 0.4400 1.5043 38 1 3.0362 -1.4246 3.4712 39 1 4.1887 -1.4344 5.5013 40 1 6.2915 0.4200 5.8419 41 1 4.8462 1.0536 6.6650 42 1 4.6623 -1.0503 7.9636 43 1 6.1077 -1.6846 7.1408 44 1 6.7141 -2.4173 10.6988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454779738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:45 Heat of formation + Delta-G solvation = -67.396801 kcal Electronic energy + Delta-G solvation = -20500.648313 eV Core-core repulsion = 17451.429273 eV Total energy + Delta-G solvation = -3049.219041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17857 -39.06026 -35.02687 -34.24341 -32.78686 -32.50050 -30.38717 -28.97727 -27.74398 -25.48614 -24.58248 -23.43886 -21.17910 -20.77723 -20.41245 -18.78842 -17.59030 -16.47894 -16.19524 -15.56078 -15.23231 -15.07829 -14.51375 -14.31270 -14.04700 -13.72539 -13.52872 -13.37279 -13.22009 -12.86899 -12.40319 -12.24892 -12.07335 -11.77998 -11.31634 -11.15722 -11.04243 -10.96134 -10.83591 -10.76753 -10.68286 -10.63616 -10.60477 -10.27404 -9.87428 -9.51714 -9.23043 -8.90374 -8.45195 -8.18039 -6.06994 -4.09433 3.13788 3.31330 3.37354 3.42288 3.67581 4.21125 4.27473 4.36277 4.42889 4.79678 4.91306 5.02843 5.03005 5.05968 5.20300 5.27144 5.29895 5.30121 5.42534 5.53738 5.58969 5.63802 5.70924 5.76403 5.80221 5.85267 5.88406 6.02142 6.10887 6.13882 6.23353 6.35125 6.44257 6.71953 6.82348 7.06428 7.31581 7.60675 7.66758 7.92603 8.29417 8.50957 8.95960 9.07628 9.55191 11.04745 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045682 B = 0.002813 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.780256 B = 9951.842912 C =10234.898814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.060 4.060 3 C -0.149 4.149 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.121 4.121 7 C -0.097 4.097 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.754 5.754 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.740 5.740 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.392 0.608 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 -1.170 -21.966 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.159 4.159 7 C -0.116 4.116 8 H 0.097 0.903 9 C 0.021 3.979 10 N -0.411 5.411 11 C 0.397 3.603 12 O -0.479 6.479 13 N -0.393 5.393 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.855 -0.222 -22.006 24.997 hybrid contribution 0.267 -0.529 0.955 1.124 sum -11.588 -0.751 -21.051 24.041 Atomic orbital electron populations 1.21911 0.94205 1.01640 1.01789 1.21107 0.95490 0.95374 0.94109 1.22072 1.01481 0.95133 1.01918 1.22497 1.00874 0.95251 0.96669 1.22467 1.00700 0.96718 0.96305 1.22468 0.99814 0.97449 0.96123 1.22116 0.98013 0.95481 0.95943 0.90265 1.21443 0.97928 0.94699 0.83802 1.45192 1.55608 1.18554 1.21707 1.16081 0.79212 0.84692 0.80316 1.90879 1.60758 1.17750 1.78514 1.45534 1.55000 1.18486 1.20330 1.21570 0.91920 0.96323 0.88439 1.19322 0.97397 0.94672 0.91059 1.21065 1.30679 1.00632 1.03501 0.92220 1.24997 0.96274 0.94895 0.98159 1.69954 1.45487 1.11615 1.26362 0.86512 0.80501 0.79298 0.81248 1.20569 1.21192 1.19714 0.92531 0.92665 0.92630 0.91962 0.92814 0.91951 0.91708 0.91413 0.91644 0.91657 0.91123 0.91602 0.91596 0.91711 0.77484 0.77473 0.92852 0.92864 0.96004 0.95994 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.14 37.16 0.30 -0.64 16 2 C -0.06 -0.46 0.94 -153.39 -0.14 -0.60 16 3 C -0.15 -1.23 7.20 37.16 0.27 -0.96 16 4 C -0.12 -0.81 5.90 -25.07 -0.15 -0.95 16 5 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 6 C -0.12 -0.96 6.08 -25.07 -0.15 -1.12 16 7 C -0.10 -0.82 2.62 -89.50 -0.23 -1.05 16 8 H 0.08 0.65 7.67 -51.93 -0.40 0.25 16 9 C 0.15 1.68 3.78 -4.04 -0.02 1.66 16 10 N -0.75 -9.89 5.41 -65.22 -0.35 -10.25 16 11 C 0.70 12.65 8.57 -86.92 -0.74 11.90 16 12 O -0.60 -13.35 16.34 5.29 0.09 -13.27 16 13 N -0.74 -13.51 5.56 -65.22 -0.36 -13.87 16 14 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.55 6.86 -51.93 -0.36 0.20 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.56 6.62 -51.93 -0.34 0.21 16 30 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 31 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.64 7.76 -51.93 -0.40 0.24 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.83 6.42 -51.93 -0.33 0.50 16 37 H 0.06 0.82 6.91 -51.93 -0.36 0.46 16 38 H 0.39 4.09 8.37 -40.82 -0.34 3.75 16 39 H 0.39 6.15 8.49 -40.82 -0.35 5.80 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -32.19 347.24 -9.18 -41.37 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.89 Total: 2.78 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.61 Total: -2.92 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.02 Total: -49.76 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.19 -9.18 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454779738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.029 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds