Wall clock time and date at job start Mon Mar 30 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.01225 * 2 1 4 4 C 1.54265 * 110.03201 * 238.56112 * 2 1 3 5 5 C 1.54890 * 104.19358 * 264.32143 * 4 2 1 6 6 C 1.54894 * 102.74813 * 322.05537 * 5 4 2 7 7 C 1.53870 * 110.03559 * 121.38753 * 2 1 3 8 8 H 1.09000 * 110.03284 * 359.95832 * 7 2 1 9 9 C 1.52997 * 110.03686 * 238.57254 * 7 2 1 10 10 N 1.46505 * 109.47212 * 175.00000 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00541 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99511 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46736 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47033 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99890 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00276 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46777 * 90.00321 * 20 18 16 22 22 H 1.48503 * 109.47030 * 210.00105 * 20 18 16 23 23 H 1.48492 * 109.47275 * 330.00654 * 20 18 16 24 24 H 1.09000 * 109.46962 * 298.60451 * 1 2 3 25 25 H 1.08996 * 109.47592 * 58.60836 * 1 2 3 26 26 H 1.09003 * 109.46998 * 178.61425 * 1 2 3 27 27 H 1.09006 * 109.47138 * 181.39369 * 3 2 1 28 28 H 1.09003 * 109.47358 * 301.39066 * 3 2 1 29 29 H 1.09003 * 109.47732 * 61.39482 * 3 2 1 30 30 H 1.09000 * 110.48786 * 22.99936 * 4 2 1 31 31 H 1.09002 * 110.48255 * 145.51207 * 4 2 1 32 32 H 1.08998 * 110.75426 * 80.37434 * 5 4 2 33 33 H 1.09001 * 110.75430 * 203.55756 * 5 4 2 34 34 H 1.08994 * 110.48714 * 279.26294 * 6 5 4 35 35 H 1.08998 * 110.48108 * 156.61627 * 6 5 4 36 36 H 1.09002 * 109.47153 * 54.99992 * 9 7 2 37 37 H 1.09001 * 109.46832 * 295.00183 * 9 7 2 38 38 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 39 39 H 0.97003 * 120.00377 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.47121 * 299.99693 * 14 13 11 41 41 H 1.08994 * 109.47503 * 60.00345 * 14 13 11 42 42 H 1.08994 * 109.47144 * 299.99776 * 15 14 13 43 43 H 1.09004 * 109.46808 * 60.00030 * 15 14 13 44 44 H 0.96998 * 120.00482 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0584 -0.7559 -1.2366 5 6 2.3281 -2.1904 -0.7182 6 6 2.8876 -1.9402 0.7043 7 6 2.0572 -0.7529 1.2340 8 1 1.2230 -1.1177 1.8334 9 6 2.9409 0.1714 2.0741 10 7 3.3384 -0.5182 3.3040 11 6 4.1247 0.1067 4.2027 12 8 4.5038 1.2427 3.9930 13 7 4.4908 -0.5279 5.3340 14 6 5.3452 0.1515 6.3112 15 6 5.6089 -0.7822 7.4943 16 6 6.4882 -0.0836 8.4992 17 1 6.8249 0.9255 8.3129 18 6 6.8619 -0.7324 9.6570 19 7 6.4515 -1.9610 9.8841 20 14 7.9513 0.1338 10.9030 21 1 7.1031 0.8626 11.8800 22 1 8.7798 -0.8698 11.6185 23 1 8.8370 1.0971 10.2011 24 1 -0.3633 0.4920 0.9022 25 1 -0.3634 0.5353 -0.8772 26 1 -0.3633 -1.0274 -0.0249 27 1 3.1433 1.4274 -0.0250 28 1 1.6750 1.9622 -0.8773 29 1 1.7157 1.9475 0.9022 30 1 1.3061 -0.7704 -2.0251 31 1 2.9798 -0.2992 -1.5979 32 1 1.4032 -2.7654 -0.6740 33 1 3.0652 -2.6947 -1.3431 34 1 3.9441 -1.6762 0.6578 35 1 2.7402 -2.8190 1.3321 36 1 2.3851 1.0743 2.3271 37 1 3.8305 0.4400 1.5043 38 1 3.0362 -1.4246 3.4712 39 1 4.1887 -1.4344 5.5013 40 1 6.2915 0.4200 5.8419 41 1 4.8462 1.0536 6.6650 42 1 4.6623 -1.0503 7.9636 43 1 6.1077 -1.6846 7.1408 44 1 6.7141 -2.4173 10.6988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454779738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:44 Heat of formation + Delta-G solvation = -88.025093 kcal Electronic energy + Delta-G solvation = -20501.542823 eV Core-core repulsion = 17451.429273 eV Total energy + Delta-G solvation = -3050.113551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22843 -40.18083 -36.69026 -35.58574 -34.78907 -33.10515 -31.85550 -30.35014 -28.34635 -26.87959 -25.83399 -24.36998 -22.90303 -22.05356 -21.38939 -19.85673 -18.71549 -18.38394 -17.43085 -16.80585 -16.49711 -16.25053 -15.96463 -15.45736 -15.24204 -15.06573 -14.72682 -14.33159 -14.27460 -13.94127 -13.79009 -13.23633 -13.20740 -12.93363 -12.74111 -12.51897 -12.40746 -12.23271 -11.89992 -11.72720 -11.67898 -11.53284 -11.43023 -11.39834 -11.33797 -11.28494 -11.12869 -10.60190 -10.30289 -9.67430 -8.23705 -6.33960 1.42197 1.42865 1.54319 1.80557 2.18569 2.41929 3.11083 3.37666 3.58383 3.66711 3.71714 4.24124 4.34768 4.41235 4.46446 4.48369 4.52175 4.55302 4.55839 4.57994 4.84197 4.85997 4.87759 4.92737 4.99242 5.06826 5.11531 5.15249 5.24581 5.27451 5.32157 5.39086 5.46427 5.51136 5.52488 5.58749 5.60039 5.61080 5.79635 6.07223 6.17954 6.79212 7.15583 7.35391 7.62164 8.88307 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045682 B = 0.002813 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.780256 B = 9951.842912 C =10234.898814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.122 4.122 7 C -0.088 4.088 8 H 0.089 0.911 9 C 0.147 3.853 10 N -0.732 5.732 11 C 0.695 3.305 12 O -0.642 6.642 13 N -0.734 5.734 14 C 0.161 3.839 15 C 0.025 3.975 16 C -0.547 4.547 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.267 1.267 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.409 0.591 39 H 0.407 0.593 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 -1.679 -22.661 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.060 4.060 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.107 4.107 8 H 0.107 0.893 9 C 0.023 3.977 10 N -0.389 5.389 11 C 0.395 3.605 12 O -0.525 6.525 13 N -0.389 5.389 14 C 0.036 3.964 15 C -0.013 4.013 16 C -0.585 4.585 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.245 0.755 39 H 0.242 0.758 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.607 -0.779 -22.734 26.007 hybrid contribution 0.458 -0.381 1.116 1.265 sum -12.149 -1.159 -21.618 24.825 Atomic orbital electron populations 1.21891 0.93234 1.02241 1.01940 1.21118 0.96199 0.94700 0.93946 1.22060 1.00754 0.95888 1.01895 1.22492 1.00960 0.95143 0.96557 1.22458 1.01202 0.96734 0.95390 1.22469 0.98891 0.97369 0.97221 1.22088 0.97622 0.95098 0.95896 0.89314 1.21551 0.97853 0.95187 0.83117 1.45041 1.53764 1.19078 1.20977 1.16212 0.79472 0.84221 0.80579 1.90851 1.62472 1.19771 1.79391 1.45220 1.54672 1.19010 1.19968 1.21061 0.91952 0.95321 0.88057 1.19120 0.96089 0.94449 0.91619 1.21472 1.31474 1.00958 1.04639 0.92340 1.25869 0.97570 0.95595 1.00120 1.70053 1.46504 1.12925 1.27150 0.85442 0.78672 0.78302 0.78616 1.19730 1.20442 1.19104 0.93024 0.91916 0.91805 0.93120 0.91761 0.92999 0.90550 0.91956 0.90627 0.91238 0.92534 0.90718 0.92621 0.92977 0.75517 0.75801 0.93974 0.93948 0.97284 0.97285 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.14 71.98 0.59 -0.98 16 2 C -0.06 -0.81 0.94 -51.46 -0.05 -0.85 16 3 C -0.15 -2.38 7.20 71.98 0.52 -1.86 16 4 C -0.11 -1.37 5.90 31.67 0.19 -1.18 16 5 C -0.12 -1.39 6.91 31.89 0.22 -1.17 16 6 C -0.12 -1.73 6.08 31.67 0.19 -1.54 16 7 C -0.09 -1.36 2.62 -10.07 -0.03 -1.38 16 8 H 0.09 1.24 7.67 -2.39 -0.02 1.23 16 9 C 0.15 3.33 3.78 86.38 0.33 3.65 16 10 N -0.73 -18.60 5.41 -478.53 -2.59 -21.19 16 11 C 0.70 25.13 8.57 179.05 1.53 26.66 16 12 O -0.64 -28.99 16.34 -3.98 -0.07 -29.05 16 13 N -0.73 -26.68 5.56 -478.53 -2.66 -29.34 16 14 C 0.16 7.19 5.61 86.38 0.48 7.67 16 15 C 0.02 1.27 5.09 29.85 0.15 1.42 16 16 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 20 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.91 6.86 -2.38 -0.02 0.90 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.93 6.62 -2.39 -0.02 0.91 16 30 H 0.08 0.76 7.84 -2.39 -0.02 0.74 16 31 H 0.06 0.82 7.84 -2.39 -0.02 0.80 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.98 7.76 -2.39 -0.02 0.96 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.41 6.42 -2.39 -0.02 1.39 16 37 H 0.05 1.34 6.91 -2.39 -0.02 1.33 16 38 H 0.41 7.81 8.37 -92.71 -0.78 7.04 16 39 H 0.41 12.45 8.49 -92.71 -0.79 11.66 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -68.59 347.24 1.23 -67.35 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.59 Total: 20.06 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.82 Total: 0.53 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -4.96 Total: -104.89 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.07 Total: -29.05 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.59 1.23 -67.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454779738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.672 kcal (2) G-P(sol) polarization free energy of solvation -68.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds