Wall clock time and date at job start Mon Mar 30 2020 01:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99778 * 2 1 3 5 5 H 1.08002 * 119.99761 * 240.00657 * 4 2 1 6 6 C 1.37876 * 119.99724 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47345 * 59.99929 * 8 6 4 10 10 H 1.48502 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47320 * 300.00374 * 8 6 4 12 12 C 1.53004 * 109.47200 * 119.99439 * 2 1 3 13 13 N 1.46499 * 109.47198 * 300.00182 * 12 2 1 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.52997 * 110.01925 * 59.02099 * 17 16 14 19 19 C 1.53874 * 110.03095 * 297.62891 * 17 16 14 20 20 C 1.54375 * 106.54495 * 240.73069 * 19 17 16 21 21 C 1.54887 * 104.21444 * 23.57312 * 20 19 17 22 22 C 1.54265 * 110.03081 * 180.41096 * 17 16 14 23 23 H 1.09005 * 109.46870 * 300.00371 * 1 2 3 24 24 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 25 25 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 28 28 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 29 29 H 0.96999 * 119.99800 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47211 * 179.97438 * 12 2 1 31 31 H 1.09006 * 109.46815 * 59.99729 * 12 2 1 32 32 H 0.97000 * 120.00386 * 359.97438 * 13 12 2 33 33 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.47529 * 60.69859 * 18 17 16 35 35 H 1.09001 * 109.47296 * 180.69983 * 18 17 16 36 36 H 1.09003 * 109.47458 * 300.70077 * 18 17 16 37 37 H 1.08994 * 110.03470 * 0.02562 * 19 17 16 38 38 H 1.08997 * 110.03176 * 121.43496 * 19 17 16 39 39 H 1.09000 * 110.46620 * 264.89734 * 20 19 17 40 40 H 1.09001 * 110.60440 * 142.32165 * 20 19 17 41 41 H 1.09002 * 110.75597 * 203.75642 * 21 20 19 42 42 H 1.09006 * 110.75500 * 80.39416 * 21 20 19 43 43 H 1.08998 * 110.48646 * 214.35157 * 22 17 16 44 44 H 1.09001 * 110.48857 * 336.86419 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4911 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4272 0.1440 4.7700 17 6 1.7857 -0.3532 6.1006 18 6 3.3069 -0.3629 6.2637 19 6 1.2250 -1.7719 6.3019 20 6 0.2597 -1.6966 7.5043 21 6 -0.1643 -0.2079 7.5589 22 6 1.1434 0.5340 7.1869 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7090 1.1613 -3.4844 30 1 3.1300 -0.7215 1.2491 31 1 1.6766 -1.7488 1.2494 32 1 0.9943 0.7584 2.3565 33 1 0.8698 0.9328 4.6809 34 1 3.6904 0.6517 6.1562 35 1 3.5640 -0.7457 7.2514 36 1 3.7503 -1.0016 5.4998 37 1 0.6865 -2.0907 5.4095 38 1 2.0365 -2.4671 6.5167 39 1 0.7726 -1.9811 8.4231 40 1 -0.6084 -2.3348 7.3398 41 1 -0.4907 0.0642 8.5627 42 1 -0.9466 -0.0020 6.8282 43 1 1.7990 0.6097 8.0544 44 1 0.9226 1.5245 6.7892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458257106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:48 Heat of formation + Delta-G solvation = -51.784941 kcal Electronic energy + Delta-G solvation = -21521.651934 eV Core-core repulsion = 18473.109874 eV Total energy + Delta-G solvation = -3048.542060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17112 -38.07782 -36.20871 -33.40877 -33.08780 -30.96047 -29.66700 -28.87290 -25.69025 -25.60176 -25.11968 -24.42366 -21.06954 -20.81970 -19.28512 -18.62231 -17.95230 -16.24698 -15.78249 -15.31044 -14.89280 -14.65921 -14.51275 -13.95351 -13.54252 -13.40582 -13.05426 -12.84235 -12.72715 -12.14430 -12.07834 -11.67740 -11.33681 -11.26508 -11.18318 -11.14943 -11.02316 -10.84155 -10.75478 -10.70237 -10.57925 -10.34105 -10.17267 -9.59127 -9.50531 -9.24877 -8.82726 -8.76328 -8.37913 -8.11668 -5.99293 -4.09143 3.18835 3.32116 3.36144 3.40559 3.73057 4.38280 4.41674 4.53713 4.70903 4.86545 5.21228 5.27367 5.32858 5.38122 5.44415 5.52494 5.63510 5.76489 5.81082 5.84911 6.01346 6.04874 6.18830 6.26465 6.37473 6.41256 6.46794 6.55286 6.84552 6.86467 6.91604 6.96921 7.07002 7.17638 7.38097 7.49518 7.59298 7.72577 8.04468 8.15970 8.42003 8.59025 8.90710 9.16289 9.56405 11.02077 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039787 B = 0.003842 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.575033 B = 7286.666958 C = 7409.974741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.152 3.848 13 N -0.735 5.735 14 C 0.698 3.302 15 O -0.595 6.595 16 N -0.746 5.746 17 C 0.192 3.808 18 C -0.161 4.161 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.125 4.125 23 H 0.005 0.995 24 H 0.084 0.916 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.084 0.916 28 H 0.005 0.995 29 H 0.260 0.740 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.392 0.608 33 H 0.390 0.610 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 1.611 18.113 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.029 3.971 13 N -0.390 5.390 14 C 0.398 3.602 15 O -0.475 6.475 16 N -0.402 5.402 17 C 0.105 3.895 18 C -0.220 4.220 19 C -0.160 4.160 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.163 4.163 23 H 0.024 0.976 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.103 0.897 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.226 0.774 33 H 0.224 0.776 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.653 0.795 18.024 18.117 hybrid contribution -0.201 0.319 -0.994 1.063 sum -1.854 1.113 17.030 17.167 Atomic orbital electron populations 1.21808 0.97809 0.99091 0.99933 1.18362 0.92771 0.92769 0.90615 1.21808 0.98527 0.98380 0.99935 1.20957 1.31440 1.12072 0.89910 0.92495 1.24874 0.94886 0.94930 0.98813 1.69798 1.36717 1.22758 1.23256 0.86636 0.79237 0.79799 0.82191 1.20286 1.21364 1.20294 1.21538 0.97770 0.95340 0.82488 1.45535 1.55735 1.32996 1.04716 1.16078 0.80469 0.83061 0.80571 1.90839 1.42964 1.27675 1.85975 1.45417 1.57105 1.33198 1.04525 1.20671 0.94605 0.93295 0.80894 1.22277 0.94827 1.02382 1.02465 1.22531 0.98889 0.96280 0.98313 1.22414 0.99109 0.96398 0.98449 1.22501 0.97142 0.95384 1.01173 1.22674 0.97121 0.98393 0.98120 0.97582 0.89717 0.95515 0.95510 0.89715 0.97580 0.93007 0.93091 0.93101 0.77365 0.77614 0.93070 0.92388 0.89845 0.91005 0.91154 0.91788 0.91797 0.91587 0.91397 0.90238 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.37 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.75 9.35 55.43 0.52 -23.24 16 8 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.30 4.50 -4.04 -0.02 3.29 16 13 N -0.74 -13.41 4.96 -65.22 -0.32 -13.74 16 14 C 0.70 12.44 7.70 -86.92 -0.67 11.77 16 15 O -0.60 -12.58 13.53 5.28 0.07 -12.51 16 16 N -0.75 -10.02 5.07 -51.37 -0.26 -10.28 16 17 C 0.19 2.30 0.94 -130.70 -0.12 2.17 16 18 C -0.16 -2.04 8.07 37.16 0.30 -1.74 16 19 C -0.12 -1.52 5.33 -25.56 -0.14 -1.66 16 20 C -0.13 -1.20 6.83 -25.02 -0.17 -1.37 16 21 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 22 C -0.13 -1.10 6.01 -25.07 -0.15 -1.25 16 23 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.39 6.46 6.18 -40.82 -0.25 6.21 16 33 H 0.39 4.30 8.26 -40.82 -0.34 3.96 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.34 6.13 -51.93 -0.32 1.02 16 37 H 0.07 1.09 7.30 -51.93 -0.38 0.71 16 38 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 44 H 0.07 0.56 7.73 -51.93 -0.40 0.16 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -28.60 334.35 -8.57 -37.17 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.61 Total: 7.72 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.99 Total: -6.02 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.07 Total: -47.25 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.60 -8.57 -37.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458257106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.617 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds