Wall clock time and date at job start Mon Mar 30 2020 01:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99778 * 2 1 3 5 5 H 1.08002 * 119.99761 * 240.00657 * 4 2 1 6 6 C 1.37876 * 119.99724 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47345 * 59.99929 * 8 6 4 10 10 H 1.48502 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47320 * 300.00374 * 8 6 4 12 12 C 1.53004 * 109.47200 * 119.99439 * 2 1 3 13 13 N 1.46499 * 109.47198 * 300.00182 * 12 2 1 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.52997 * 110.01925 * 59.02099 * 17 16 14 19 19 C 1.53874 * 110.03095 * 297.62891 * 17 16 14 20 20 C 1.54375 * 106.54495 * 240.73069 * 19 17 16 21 21 C 1.54887 * 104.21444 * 23.57312 * 20 19 17 22 22 C 1.54265 * 110.03081 * 180.41096 * 17 16 14 23 23 H 1.09005 * 109.46870 * 300.00371 * 1 2 3 24 24 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 25 25 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 28 28 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 29 29 H 0.96999 * 119.99800 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47211 * 179.97438 * 12 2 1 31 31 H 1.09006 * 109.46815 * 59.99729 * 12 2 1 32 32 H 0.97000 * 120.00386 * 359.97438 * 13 12 2 33 33 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.47529 * 60.69859 * 18 17 16 35 35 H 1.09001 * 109.47296 * 180.69983 * 18 17 16 36 36 H 1.09003 * 109.47458 * 300.70077 * 18 17 16 37 37 H 1.08994 * 110.03470 * 0.02562 * 19 17 16 38 38 H 1.08997 * 110.03176 * 121.43496 * 19 17 16 39 39 H 1.09000 * 110.46620 * 264.89734 * 20 19 17 40 40 H 1.09001 * 110.60440 * 142.32165 * 20 19 17 41 41 H 1.09002 * 110.75597 * 203.75642 * 21 20 19 42 42 H 1.09006 * 110.75500 * 80.39416 * 21 20 19 43 43 H 1.08998 * 110.48646 * 214.35157 * 22 17 16 44 44 H 1.09001 * 110.48857 * 336.86419 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4911 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4272 0.1440 4.7700 17 6 1.7857 -0.3532 6.1006 18 6 3.3069 -0.3629 6.2637 19 6 1.2250 -1.7719 6.3019 20 6 0.2597 -1.6966 7.5043 21 6 -0.1643 -0.2079 7.5589 22 6 1.1434 0.5340 7.1869 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7090 1.1613 -3.4844 30 1 3.1300 -0.7215 1.2491 31 1 1.6766 -1.7488 1.2494 32 1 0.9943 0.7584 2.3565 33 1 0.8698 0.9328 4.6809 34 1 3.6904 0.6517 6.1562 35 1 3.5640 -0.7457 7.2514 36 1 3.7503 -1.0016 5.4998 37 1 0.6865 -2.0907 5.4095 38 1 2.0365 -2.4671 6.5167 39 1 0.7726 -1.9811 8.4231 40 1 -0.6084 -2.3348 7.3398 41 1 -0.4907 0.0642 8.5627 42 1 -0.9466 -0.0020 6.8282 43 1 1.7990 0.6097 8.0544 44 1 0.9226 1.5245 6.7892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458257106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:48 Heat of formation + Delta-G solvation = -69.058419 kcal Electronic energy + Delta-G solvation = -21522.400968 eV Core-core repulsion = 18473.109874 eV Total energy + Delta-G solvation = -3049.291094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41985 -39.31694 -37.89681 -34.97736 -34.42468 -32.68179 -30.84203 -29.68231 -27.55625 -27.44236 -26.69247 -25.65628 -22.36466 -21.65568 -20.66179 -20.20932 -19.33753 -17.75189 -17.30870 -16.65196 -16.41126 -16.06260 -15.83693 -15.24095 -14.85373 -14.69001 -14.65377 -14.21090 -13.99617 -13.82150 -13.27116 -13.08085 -13.06954 -12.69691 -12.62329 -12.52636 -12.23424 -12.13273 -12.05812 -11.94770 -11.86792 -11.68701 -11.46986 -11.40242 -11.21359 -10.88764 -10.69672 -10.38861 -10.15777 -9.60343 -8.01467 -6.17138 1.44626 1.45435 1.52246 1.89384 2.30128 2.47033 3.21984 3.43610 3.61040 3.74510 3.98746 4.35760 4.43853 4.49106 4.53853 4.55768 4.60519 4.72280 4.77831 4.85991 4.93461 4.94373 5.01429 5.06884 5.11606 5.12109 5.15097 5.20989 5.25416 5.36677 5.38482 5.43275 5.50507 5.67588 5.67913 5.69525 5.83041 6.15876 6.16705 6.23156 6.44684 6.86769 7.26201 7.50462 7.75648 8.97310 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039787 B = 0.003842 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.575033 B = 7286.666958 C = 7409.974741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.051 3.949 3 C -0.117 4.117 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.171 3.829 13 N -0.730 5.730 14 C 0.696 3.304 15 O -0.632 6.632 16 N -0.728 5.728 17 C 0.183 3.817 18 C -0.158 4.158 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.116 4.116 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.260 0.740 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.403 0.597 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 2.885 20.081 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.175 4.175 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.046 3.954 13 N -0.386 5.386 14 C 0.396 3.604 15 O -0.513 6.513 16 N -0.384 5.384 17 C 0.097 3.903 18 C -0.216 4.216 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.153 4.153 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.239 0.761 33 H 0.242 0.758 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.468 2.108 20.026 20.288 hybrid contribution 0.063 -0.111 -1.559 1.564 sum -2.406 1.997 18.467 18.730 Atomic orbital electron populations 1.21639 0.97098 0.98503 1.00283 1.18364 0.93265 0.93078 0.90250 1.21637 0.97788 0.97803 1.00292 1.21245 1.31806 1.12196 0.91629 0.93850 1.25441 0.95127 0.95597 1.00912 1.69899 1.36938 1.23240 1.23650 0.85824 0.78624 0.78817 0.79581 1.20296 1.20711 1.20287 1.21049 0.96465 0.94495 0.83385 1.45245 1.56042 1.33204 1.04062 1.16235 0.80210 0.82827 0.81174 1.90827 1.44562 1.29419 1.86511 1.45318 1.56188 1.33001 1.03930 1.20961 0.94548 0.93907 0.80879 1.22228 0.95122 1.01922 1.02347 1.22502 0.98887 0.96411 0.98414 1.22403 0.98376 0.97701 0.97408 1.22505 0.96754 0.94003 1.02454 1.22667 0.97234 0.98210 0.97235 0.94531 0.91907 0.96524 0.96483 0.91914 0.94510 0.93015 0.94937 0.95022 0.76057 0.75793 0.92402 0.90208 0.93812 0.94294 0.92569 0.90250 0.91819 0.89261 0.91736 0.88439 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.55 8.01 25.60 0.21 -28.34 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.55 5.15 84.65 0.44 1.98 16 7 N -0.90 -48.22 9.35 21.45 0.20 -48.02 16 8 Si 0.94 43.03 29.54 68.60 2.03 45.06 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.17 7.55 4.50 86.38 0.39 7.94 16 13 N -0.73 -26.18 4.96 -478.52 -2.37 -28.55 16 14 C 0.70 24.65 7.70 179.05 1.38 26.03 16 15 O -0.63 -27.45 13.53 -4.01 -0.05 -27.51 16 16 N -0.73 -18.45 5.07 -434.70 -2.21 -20.66 16 17 C 0.18 4.07 0.94 4.33 0.00 4.07 16 18 C -0.16 -3.81 8.07 71.98 0.58 -3.23 16 19 C -0.12 -3.03 5.33 31.36 0.17 -2.86 16 20 C -0.12 -2.03 6.83 31.71 0.22 -1.81 16 21 C -0.12 -1.57 6.91 31.88 0.22 -1.35 16 22 C -0.12 -1.60 6.01 31.67 0.19 -1.41 16 23 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 24 H 0.06 3.13 6.07 -2.38 -0.01 3.12 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 3.13 6.07 -2.38 -0.01 3.11 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 29 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 30 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.40 12.49 6.18 -92.71 -0.57 11.91 16 33 H 0.41 7.82 8.26 -92.71 -0.77 7.06 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.42 6.13 -2.39 -0.01 1.40 16 37 H 0.04 1.20 7.30 -2.39 -0.02 1.18 16 38 H 0.06 1.50 7.67 -2.39 -0.02 1.48 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.10 1.07 7.85 -2.39 -0.02 1.05 16 44 H 0.09 0.98 7.73 -2.39 -0.02 0.96 16 Total: -1.00 -63.20 334.35 2.16 -61.04 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.35 Total: 24.66 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 4.92 Total: -6.02 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -4.38 Total: -97.23 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -63.20 2.16 -61.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458257106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.023 kcal (2) G-P(sol) polarization free energy of solvation -63.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds