Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99928 * 2 1 4 4 O 1.21586 * 120.00219 * 180.02562 * 3 2 1 5 5 N 1.34771 * 120.00112 * 359.97438 * 3 2 1 6 6 C 1.46505 * 120.00337 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47345 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47275 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47189 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99939 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99939 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00147 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00059 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47209 * 60.00043 * 13 11 9 15 15 H 1.48499 * 109.47239 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47038 * 300.00360 * 13 11 9 17 17 C 1.46501 * 120.00344 * 180.02562 * 2 1 3 18 18 C 1.53789 * 113.61170 * 241.19160 * 17 2 1 19 19 C 1.53788 * 87.07942 * 89.19688 * 18 17 2 20 20 C 1.53000 * 113.61369 * 139.98107 * 19 18 17 21 21 C 1.53003 * 113.61351 * 270.79906 * 19 18 17 22 22 C 1.53781 * 87.17551 * 25.38842 * 19 18 17 23 23 H 1.09000 * 109.47162 * 271.86004 * 1 2 3 24 24 H 1.08997 * 109.47064 * 31.86095 * 1 2 3 25 25 H 1.09004 * 109.46906 * 151.86143 * 1 2 3 26 26 H 0.96998 * 120.00298 * 0.02562 * 5 3 2 27 27 H 1.09003 * 109.46869 * 299.99935 * 6 5 3 28 28 H 1.08994 * 109.46892 * 59.99815 * 6 5 3 29 29 H 1.09002 * 109.47338 * 300.00195 * 7 6 5 30 30 H 1.09007 * 109.46775 * 59.99812 * 7 6 5 31 31 H 1.08999 * 109.46881 * 300.00679 * 8 7 6 32 32 H 1.09007 * 109.46605 * 60.00246 * 8 7 6 33 33 H 0.96996 * 120.00129 * 179.97438 * 12 11 9 34 34 H 1.08998 * 112.85279 * 109.99382 * 17 2 1 35 35 H 1.08995 * 113.61060 * 334.64582 * 18 17 2 36 36 H 1.09003 * 113.61202 * 203.74199 * 18 17 2 37 37 H 1.08998 * 109.47214 * 181.52278 * 20 19 18 38 38 H 1.09000 * 109.47230 * 301.53017 * 20 19 18 39 39 H 1.09007 * 109.46772 * 61.52379 * 20 19 18 40 40 H 1.09004 * 109.47001 * 279.26343 * 21 19 18 41 41 H 1.08994 * 109.47133 * 39.25858 * 21 19 18 42 42 H 1.08998 * 109.47202 * 159.26237 * 21 19 18 43 43 H 1.09003 * 113.61357 * 89.15680 * 22 19 18 44 44 H 1.08993 * 113.61355 * 220.05948 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1673 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6032 -0.0011 7 6 1.2032 4.7661 -0.0010 8 6 1.9682 6.0911 -0.0009 9 6 0.9889 7.2365 -0.0014 10 1 -0.0729 7.0391 -0.0013 11 6 1.4484 8.5364 -0.0009 12 7 2.7414 8.7768 -0.0005 13 14 0.2345 9.9563 -0.0008 14 1 -0.6195 9.8773 1.2114 15 1 0.9770 11.2423 -0.0009 16 1 -0.6190 9.8779 -1.2136 17 6 2.1976 -1.2687 -0.0006 18 6 3.0936 -1.4631 1.2341 19 6 1.8764 -2.1073 1.9185 20 6 2.2271 -3.3305 2.7680 21 6 0.9876 -1.1052 2.6581 22 6 1.3675 -2.4602 0.5109 23 1 -0.3633 0.0334 1.0271 24 1 -0.3633 0.8728 -0.5424 25 1 -0.3633 -0.9062 -0.4847 26 1 0.4950 2.3344 -0.0005 27 1 2.8241 3.6613 0.8889 28 1 2.8241 3.6605 -0.8910 29 1 0.5762 4.7081 -0.8907 30 1 0.5769 4.7085 0.8893 31 1 2.5949 6.1487 0.8890 32 1 2.5948 6.1489 -0.8910 33 1 3.0648 9.6913 -0.0006 34 1 2.7067 -1.4631 -0.9445 35 1 3.4099 -0.5277 1.6957 36 1 3.9193 -2.1556 1.0697 37 1 1.3163 -3.7477 3.1976 38 1 2.7106 -4.0808 2.1425 39 1 2.9042 -3.0343 3.5693 40 1 1.4243 -0.8817 3.6315 41 1 0.9113 -0.1877 2.0748 42 1 -0.0057 -1.5325 2.7949 43 1 1.7204 -3.4258 0.1484 44 1 0.2923 -2.3287 0.3896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458294017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = -13.830742 kcal Electronic energy + Delta-G solvation = -20914.928163 eV Core-core repulsion = 17868.031921 eV Total energy + Delta-G solvation = -3046.896242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04200 -38.81607 -35.33002 -34.76272 -33.19430 -31.24859 -30.32936 -27.82181 -27.20468 -26.52010 -25.36972 -23.44633 -21.98232 -20.59177 -19.76391 -18.34406 -17.51570 -16.69817 -16.36866 -16.09320 -14.97252 -14.91397 -14.44984 -14.39868 -13.97774 -13.84237 -13.64086 -13.29728 -13.02281 -12.62689 -12.45492 -12.23697 -11.87202 -11.81337 -11.74680 -11.58950 -11.28397 -10.96763 -10.87510 -10.68618 -10.60767 -10.45572 -10.31874 -9.86615 -9.82977 -9.40382 -9.11963 -8.83942 -8.39915 -8.35502 -6.00300 -4.03492 2.69301 3.32715 3.37495 3.39331 3.39502 4.03377 4.25811 4.29917 4.45510 4.59707 4.65381 4.88224 5.02832 5.15616 5.32834 5.35260 5.38203 5.40009 5.45450 5.51650 5.61351 5.66205 5.73359 5.76553 5.83815 5.85308 5.87649 6.09261 6.16399 6.21439 6.24115 6.50374 6.62621 6.64985 6.85803 7.05017 7.06301 7.65304 7.78710 7.98657 8.12380 8.39588 8.79771 9.03055 9.60483 11.10992 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041546 B = 0.003035 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.793995 B = 9222.508360 C = 9344.481605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.620 5.620 3 C 0.703 3.297 4 O -0.586 6.586 5 N -0.742 5.742 6 C 0.134 3.866 7 C -0.120 4.120 8 C 0.025 3.975 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.145 3.855 18 C -0.135 4.135 19 C -0.087 4.087 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.139 4.139 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.393 0.607 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.712 -24.563 2.409 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.360 5.360 3 C 0.404 3.596 4 O -0.464 6.464 5 N -0.398 5.398 6 C 0.011 3.989 7 C -0.158 4.158 8 C -0.013 4.013 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.041 3.959 18 C -0.174 4.174 19 C -0.087 4.087 20 C -0.192 4.192 21 C -0.198 4.198 22 C -0.176 4.176 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.228 0.772 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.668 -24.384 2.404 24.943 hybrid contribution -1.148 0.855 -0.021 1.431 sum -5.816 -23.530 2.383 24.355 Atomic orbital electron populations 1.21915 0.80325 1.03011 1.02076 1.46751 1.05806 1.04306 1.79090 1.15883 0.85393 0.80153 0.78135 1.90910 1.11511 1.86201 1.57749 1.45549 1.09799 1.05159 1.79284 1.21501 0.95132 0.80400 1.01839 1.21885 0.97860 0.95304 1.00736 1.19018 0.95457 0.89154 0.97677 1.21170 0.92951 0.90967 1.51030 0.92720 1.25029 0.95123 0.99003 0.95294 1.69957 1.12532 1.20312 1.50485 0.86644 0.81126 0.81561 0.78567 1.20253 1.21272 1.20261 1.21596 0.93642 0.82343 0.98321 1.23332 0.96127 1.01636 0.96272 1.21810 0.96878 0.95971 0.94040 1.21719 1.01089 0.96701 0.99669 1.21889 0.98331 0.99270 1.00261 1.23495 1.00375 0.97576 0.96189 0.92067 0.91428 0.90625 0.77233 0.92007 0.92006 0.92839 0.92832 0.96255 0.96258 0.92868 0.90504 0.90073 0.89545 0.92825 0.92640 0.92588 0.92673 0.90756 0.92731 0.88911 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 8.42 59.85 0.50 1.07 16 2 N -0.62 -7.32 1.80 -178.62 -0.32 -7.64 16 3 C 0.70 11.21 7.90 -86.92 -0.69 10.52 16 4 O -0.59 -11.69 15.13 5.29 0.08 -11.61 16 5 N -0.74 -11.26 5.42 -65.22 -0.35 -11.62 16 6 C 0.13 2.46 5.67 -4.04 -0.02 2.44 16 7 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 8 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 9 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.15 1.56 4.16 -67.02 -0.28 1.28 16 18 C -0.14 -1.50 6.51 -25.91 -0.17 -1.67 16 19 C -0.09 -0.76 1.39 -153.69 -0.21 -0.97 16 20 C -0.13 -1.00 9.18 37.16 0.34 -0.66 16 21 C -0.14 -1.29 8.05 37.16 0.30 -0.99 16 22 C -0.14 -1.06 6.58 -25.82 -0.17 -1.23 16 23 H 0.06 0.46 5.84 -51.93 -0.30 0.15 16 24 H 0.07 0.52 6.46 -51.93 -0.34 0.19 16 25 H 0.08 0.48 6.49 -51.93 -0.34 0.14 16 26 H 0.39 4.87 6.24 -40.82 -0.25 4.62 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.16 6.97 -51.93 -0.36 0.80 16 36 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.37 7.98 -51.93 -0.41 -0.05 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.78 4.05 -51.93 -0.21 0.57 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.59 7.99 -51.93 -0.41 0.17 16 44 H 0.08 0.51 5.87 -51.93 -0.30 0.21 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -32.63 340.77 -8.38 -41.01 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.55 Total: 0.14 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.09 Total: -5.70 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.06 Total: -45.52 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.63 -8.38 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458294017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.184 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds