Wall clock time and date at job start Mon Mar 30 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.50703 * 109.46827 * 240.00381 * 2 1 3 5 5 H 1.08006 * 119.99595 * 240.00197 * 4 2 1 6 6 C 1.37872 * 120.00413 * 59.99852 * 4 2 1 7 7 N 1.31514 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00415 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46752 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47424 * 119.99883 * 8 6 4 11 11 H 1.48504 * 109.47075 * 240.00080 * 8 6 4 12 12 C 1.53003 * 109.47355 * 120.00292 * 2 1 3 13 13 N 1.46500 * 109.47041 * 299.99479 * 12 2 1 14 14 C 1.34770 * 120.00126 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00022 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00346 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00262 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47197 * 180.02562 * 17 16 14 19 19 H 1.08997 * 115.56260 * 29.30936 * 18 17 16 20 20 C 1.53000 * 117.50003 * 243.62464 * 18 17 16 21 21 C 1.53001 * 117.49930 * 175.00107 * 18 17 16 22 22 C 1.52997 * 117.49837 * 359.97438 * 21 18 17 23 23 C 1.53004 * 117.51666 * 214.97196 * 21 18 17 24 24 H 1.09004 * 109.46953 * 299.99321 * 1 2 3 25 25 H 1.08994 * 109.47521 * 59.99433 * 1 2 3 26 26 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46684 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47186 * 299.99695 * 3 2 1 29 29 H 1.08994 * 109.47200 * 60.00672 * 3 2 1 30 30 H 0.96996 * 120.00170 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46738 * 179.97438 * 12 2 1 32 32 H 1.09001 * 109.47227 * 59.99942 * 12 2 1 33 33 H 0.97007 * 119.99970 * 0.02562 * 13 12 2 34 34 H 0.96994 * 119.99579 * 0.02562 * 16 14 13 35 35 H 1.08995 * 109.46949 * 59.99633 * 17 16 14 36 36 H 1.09003 * 109.46950 * 299.99830 * 17 16 14 37 37 H 1.08999 * 117.50329 * 145.01980 * 20 18 17 38 38 H 1.09005 * 117.51517 * 359.97438 * 20 18 17 39 39 H 1.09002 * 109.47153 * 180.02562 * 22 21 18 40 40 H 1.09001 * 109.46832 * 60.01611 * 22 21 18 41 41 H 1.09004 * 109.47261 * 300.01593 * 22 21 18 42 42 H 1.08998 * 109.46954 * 180.11748 * 23 21 18 43 43 H 1.09009 * 109.46847 * 300.11645 * 23 21 18 44 44 H 1.08992 * 109.47284 * 60.11348 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3211 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6039 10 1 1.1659 -1.5865 -4.8162 11 1 3.1464 -0.1872 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5760 -1.4800 3.7810 16 7 1.4275 0.1436 4.7700 17 6 1.7815 -0.3569 6.1005 18 6 1.1473 0.5378 7.1674 19 1 0.2142 1.0226 6.8806 20 6 2.0896 1.3105 8.0925 21 6 1.3026 0.1131 8.6290 22 6 2.0797 -1.1742 8.9119 23 6 0.1365 0.4014 9.5766 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7086 1.1613 -3.4843 31 1 3.1301 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2492 33 1 0.9939 0.7578 2.3565 34 1 0.8696 0.9320 4.6810 35 1 2.8653 -0.3480 6.2156 36 1 1.4123 -1.3761 6.2154 37 1 1.7764 2.3037 8.4144 38 1 3.1614 1.1813 7.9416 39 1 2.1097 -1.3516 9.9869 40 1 3.0963 -1.0760 8.5311 41 1 1.5864 -2.0121 8.4191 42 1 0.3861 0.0492 10.5775 43 1 -0.0514 1.4748 9.6054 44 1 -0.7559 -0.1142 9.2220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458388420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:53 Heat of formation + Delta-G solvation = -26.589490 kcal Electronic energy + Delta-G solvation = -20626.478616 eV Core-core repulsion = 17579.029113 eV Total energy + Delta-G solvation = -3047.449503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.73745 -38.74228 -36.41736 -34.12425 -33.17891 -30.85463 -29.66616 -27.99085 -26.61357 -25.69283 -25.39954 -24.32656 -21.41819 -20.59551 -19.15559 -18.73901 -17.75932 -16.23261 -15.78782 -15.33157 -14.81038 -14.77669 -14.48038 -14.10443 -13.72392 -13.49758 -13.45031 -12.83436 -12.81564 -12.61462 -12.37006 -12.22611 -12.14348 -11.63405 -11.35801 -11.25883 -11.17691 -10.85633 -10.63559 -10.36329 -10.19268 -10.18782 -9.97878 -9.65252 -9.59802 -9.26987 -8.88804 -8.75160 -8.39079 -8.13325 -5.99925 -4.09600 3.06439 3.28870 3.37385 3.42417 3.49067 3.70877 4.35172 4.40750 4.47191 4.56537 4.77884 4.84728 5.08616 5.26913 5.26973 5.35415 5.53492 5.58636 5.63977 5.65379 5.69331 5.78314 5.86715 5.98028 6.09405 6.25592 6.40609 6.54258 6.72268 6.83966 6.86170 6.94952 7.06598 7.14624 7.35426 7.46583 7.59070 7.72593 8.04208 8.15657 8.41390 8.54197 8.90751 9.10317 9.56127 11.01597 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048912 B = 0.003082 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.322804 B = 9083.356276 C = 9322.030442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.733 5.733 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.752 5.752 17 C 0.174 3.826 18 C -0.160 4.160 19 H 0.109 0.891 20 C -0.169 4.169 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 2.769 20.193 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.481 6.481 16 N -0.409 5.409 17 C 0.049 3.951 18 C -0.178 4.178 19 H 0.127 0.873 20 C -0.205 4.205 21 C -0.121 4.121 22 C -0.177 4.177 23 C -0.172 4.172 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.519 1.936 20.117 20.267 hybrid contribution -0.244 0.397 -0.968 1.074 sum -1.763 2.333 19.148 19.370 Atomic orbital electron populations 1.21819 0.97801 0.99148 0.99978 1.18367 0.92784 0.92772 0.90586 1.21818 0.98580 0.98378 0.99982 1.21040 1.31280 1.12043 0.89874 0.92352 1.24881 0.94897 0.94947 0.98853 1.69816 1.36815 1.22855 1.23064 0.86517 0.78623 0.79769 0.82990 1.19738 1.21087 1.21092 1.21571 0.97855 0.95402 0.82428 1.45498 1.55641 1.33033 1.04605 1.16070 0.80560 0.83000 0.80700 1.90877 1.43213 1.27814 1.86159 1.45107 1.57596 1.33374 1.04859 1.20579 0.98926 0.96402 0.79157 1.22635 1.01144 1.02863 0.91203 0.87294 1.23366 0.97964 0.95911 1.03304 1.21594 0.99663 0.96560 0.94257 1.21385 0.99426 0.95212 1.01629 1.21364 0.96332 1.01380 0.98139 0.97558 0.89659 0.95464 0.95459 0.89668 0.97542 0.93109 0.93007 0.93007 0.77230 0.77347 0.91814 0.91558 0.88756 0.88533 0.92105 0.92118 0.91845 0.92037 0.92472 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.50 -13.36 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.79 9.35 55.43 0.52 -23.27 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 13 N -0.73 -13.58 4.96 -65.22 -0.32 -13.90 16 14 C 0.70 12.88 8.57 -86.92 -0.74 12.14 16 15 O -0.60 -13.53 16.34 5.29 0.09 -13.44 16 16 N -0.75 -10.28 5.56 -65.23 -0.36 -10.65 16 17 C 0.17 2.10 5.04 -4.04 -0.02 2.08 16 18 C -0.16 -1.45 5.57 -90.62 -0.50 -1.95 16 19 H 0.11 0.91 8.04 -51.93 -0.42 0.49 16 20 C -0.17 -1.37 9.47 -26.73 -0.25 -1.63 16 21 C -0.12 -0.97 2.70 -154.51 -0.42 -1.38 16 22 C -0.12 -0.95 8.86 37.16 0.33 -0.62 16 23 C -0.12 -0.77 9.85 37.16 0.37 -0.41 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.39 6.50 6.18 -40.82 -0.25 6.25 16 34 H 0.39 4.30 8.41 -40.82 -0.34 3.96 16 35 H 0.06 0.83 7.88 -51.93 -0.41 0.43 16 36 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 37 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 38 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 40 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 41 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 42 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 43 H 0.06 0.35 7.90 -51.92 -0.41 -0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -29.57 347.81 -8.67 -38.25 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.70 Total: 6.47 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.11 Total: -4.57 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.17 Total: -47.81 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.57 -8.67 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458388420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.656 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds