Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.50703 * 109.46827 * 240.00381 * 2 1 3 5 5 H 1.08006 * 119.99595 * 240.00197 * 4 2 1 6 6 C 1.37872 * 120.00413 * 59.99852 * 4 2 1 7 7 N 1.31514 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00415 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46752 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47424 * 119.99883 * 8 6 4 11 11 H 1.48504 * 109.47075 * 240.00080 * 8 6 4 12 12 C 1.53003 * 109.47355 * 120.00292 * 2 1 3 13 13 N 1.46500 * 109.47041 * 299.99479 * 12 2 1 14 14 C 1.34770 * 120.00126 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00022 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00346 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00262 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47197 * 180.02562 * 17 16 14 19 19 H 1.08997 * 115.56260 * 29.30936 * 18 17 16 20 20 C 1.53000 * 117.50003 * 243.62464 * 18 17 16 21 21 C 1.53001 * 117.49930 * 175.00107 * 18 17 16 22 22 C 1.52997 * 117.49837 * 359.97438 * 21 18 17 23 23 C 1.53004 * 117.51666 * 214.97196 * 21 18 17 24 24 H 1.09004 * 109.46953 * 299.99321 * 1 2 3 25 25 H 1.08994 * 109.47521 * 59.99433 * 1 2 3 26 26 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46684 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47186 * 299.99695 * 3 2 1 29 29 H 1.08994 * 109.47200 * 60.00672 * 3 2 1 30 30 H 0.96996 * 120.00170 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46738 * 179.97438 * 12 2 1 32 32 H 1.09001 * 109.47227 * 59.99942 * 12 2 1 33 33 H 0.97007 * 119.99970 * 0.02562 * 13 12 2 34 34 H 0.96994 * 119.99579 * 0.02562 * 16 14 13 35 35 H 1.08995 * 109.46949 * 59.99633 * 17 16 14 36 36 H 1.09003 * 109.46950 * 299.99830 * 17 16 14 37 37 H 1.08999 * 117.50329 * 145.01980 * 20 18 17 38 38 H 1.09005 * 117.51517 * 359.97438 * 20 18 17 39 39 H 1.09002 * 109.47153 * 180.02562 * 22 21 18 40 40 H 1.09001 * 109.46832 * 60.01611 * 22 21 18 41 41 H 1.09004 * 109.47261 * 300.01593 * 22 21 18 42 42 H 1.08998 * 109.46954 * 180.11748 * 23 21 18 43 43 H 1.09009 * 109.46847 * 300.11645 * 23 21 18 44 44 H 1.08992 * 109.47284 * 60.11348 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3211 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6039 10 1 1.1659 -1.5865 -4.8162 11 1 3.1464 -0.1872 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5760 -1.4800 3.7810 16 7 1.4275 0.1436 4.7700 17 6 1.7815 -0.3569 6.1005 18 6 1.1473 0.5378 7.1674 19 1 0.2142 1.0226 6.8806 20 6 2.0896 1.3105 8.0925 21 6 1.3026 0.1131 8.6290 22 6 2.0797 -1.1742 8.9119 23 6 0.1365 0.4014 9.5766 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7086 1.1613 -3.4843 31 1 3.1301 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2492 33 1 0.9939 0.7578 2.3565 34 1 0.8696 0.9320 4.6810 35 1 2.8653 -0.3480 6.2156 36 1 1.4123 -1.3761 6.2154 37 1 1.7764 2.3037 8.4144 38 1 3.1614 1.1813 7.9416 39 1 2.1097 -1.3516 9.9869 40 1 3.0963 -1.0760 8.5311 41 1 1.5864 -2.0121 8.4191 42 1 0.3861 0.0492 10.5775 43 1 -0.0514 1.4748 9.6054 44 1 -0.7559 -0.1142 9.2220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458388420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -44.181263 kcal Electronic energy + Delta-G solvation = -20627.241453 eV Core-core repulsion = 17579.029113 eV Total energy + Delta-G solvation = -3048.212339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09630 -39.62357 -38.17877 -35.41229 -34.94773 -32.67875 -30.44360 -28.66458 -27.75632 -27.54980 -27.27624 -25.92312 -22.20032 -22.04382 -20.58020 -20.08648 -18.97864 -17.75606 -17.40290 -16.69095 -16.60507 -15.98317 -15.44294 -15.23658 -14.97718 -14.82621 -14.63191 -14.42650 -14.08687 -13.98415 -13.36080 -13.19140 -13.10062 -13.05685 -12.84690 -12.67993 -12.56242 -12.29839 -12.24180 -12.13305 -11.92614 -11.47402 -11.43360 -11.16204 -10.93972 -10.69053 -10.48324 -10.40078 -10.24486 -9.62989 -8.01747 -6.17210 1.41925 1.45938 1.55477 1.79650 2.20498 2.46881 2.76409 3.21911 3.42730 3.65478 3.84510 3.92246 4.19736 4.27485 4.42748 4.54125 4.55289 4.72334 4.73794 4.82017 4.85482 4.95585 5.00828 5.06980 5.07374 5.07981 5.10906 5.12280 5.21435 5.22939 5.31459 5.39554 5.47951 5.56606 5.64318 5.68408 5.68544 6.09441 6.16452 6.23159 6.44872 6.87233 7.18010 7.50545 7.64477 8.97486 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048912 B = 0.003082 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.322804 B = 9083.356276 C = 9322.030442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.695 3.305 15 O -0.644 6.644 16 N -0.731 5.731 17 C 0.175 3.825 18 C -0.164 4.164 19 H 0.123 0.877 20 C -0.164 4.164 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.114 4.114 24 H 0.037 0.963 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.406 0.594 34 H 0.411 0.589 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 3.864 21.612 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.394 3.606 15 O -0.527 6.527 16 N -0.388 5.388 17 C 0.051 3.949 18 C -0.182 4.182 19 H 0.141 0.859 20 C -0.201 4.201 21 C -0.118 4.118 22 C -0.179 4.179 23 C -0.171 4.171 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.242 0.758 34 H 0.247 0.753 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.339 3.081 21.568 21.912 hybrid contribution 0.011 0.048 -1.350 1.351 sum -2.328 3.129 20.218 20.591 Atomic orbital electron populations 1.21663 0.97067 0.98649 1.00383 1.18356 0.93292 0.93044 0.90149 1.21663 0.97902 0.97828 1.00383 1.21308 1.31627 1.12131 0.91594 0.93793 1.25447 0.95149 0.95615 1.00948 1.69911 1.37035 1.23331 1.23544 0.85700 0.78131 0.78727 0.80209 1.20065 1.20675 1.20686 1.21119 0.96641 0.94658 0.83280 1.45188 1.55824 1.33217 1.03850 1.16221 0.80255 0.82690 0.81402 1.90852 1.45168 1.29873 1.86793 1.44953 1.56579 1.33173 1.04128 1.20623 0.98503 0.96708 0.79055 1.22535 1.01778 1.03144 0.90790 0.85948 1.23422 0.97557 0.96651 1.02426 1.21713 1.00061 0.96454 0.93584 1.21414 0.98947 0.95132 1.02454 1.21379 0.95581 1.02006 0.98102 0.94432 0.91844 0.96370 0.96373 0.91850 0.94424 0.93024 0.94761 0.94750 0.75760 0.75317 0.93009 0.92779 0.87237 0.89090 0.90748 0.92854 0.92601 0.91214 0.91629 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -28.30 8.01 25.60 0.21 -28.09 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.49 5.15 84.65 0.44 1.92 16 7 N -0.90 -48.11 9.35 21.45 0.20 -47.91 16 8 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.17 7.38 4.50 86.38 0.39 7.77 16 13 N -0.73 -25.96 4.96 -478.53 -2.37 -28.33 16 14 C 0.69 25.10 8.57 179.06 1.53 26.63 16 15 O -0.64 -29.20 16.34 -3.99 -0.07 -29.27 16 16 N -0.73 -18.78 5.56 -478.55 -2.66 -21.44 16 17 C 0.18 4.07 5.04 86.38 0.43 4.50 16 18 C -0.16 -2.62 5.57 -10.80 -0.06 -2.68 16 19 H 0.12 1.66 8.04 -2.39 -0.02 1.64 16 20 C -0.16 -2.29 9.47 30.59 0.29 -2.00 16 21 C -0.12 -1.65 2.70 -52.18 -0.14 -1.79 16 22 C -0.12 -1.81 8.86 71.98 0.64 -1.17 16 23 C -0.11 -1.23 9.85 71.98 0.71 -0.52 16 24 H 0.04 1.40 6.86 -2.38 -0.02 1.38 16 25 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 29 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 30 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 12.38 6.18 -92.70 -0.57 11.80 16 34 H 0.41 7.84 8.41 -92.71 -0.78 7.06 16 35 H 0.05 1.34 7.88 -2.39 -0.02 1.32 16 36 H 0.05 1.40 7.77 -2.39 -0.02 1.39 16 37 H 0.11 1.23 8.05 -2.39 -0.02 1.21 16 38 H 0.09 1.39 7.94 -2.38 -0.02 1.37 16 39 H 0.07 0.88 7.92 -2.39 -0.02 0.86 16 40 H 0.05 0.85 7.90 -2.39 -0.02 0.83 16 41 H 0.05 0.90 7.83 -2.38 -0.02 0.89 16 42 H 0.07 0.65 7.92 -2.39 -0.02 0.63 16 43 H 0.06 0.61 7.90 -2.38 -0.02 0.59 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -63.40 347.81 2.32 -61.08 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.37 Total: 23.48 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.57 Total: -2.57 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -4.83 Total: -97.69 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.07 Total: -29.27 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.40 2.32 -61.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458388420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.896 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds