Wall clock time and date at job start Mon Mar 30 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99883 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.52997 * 109.46903 * 240.00006 * 2 1 3 13 13 N 1.46499 * 109.47555 * 60.00409 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21583 * 119.99943 * 359.97438 * 14 13 12 16 16 N 1.34769 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.46507 * 120.00053 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47155 * 180.02562 * 17 16 14 19 19 H 1.09009 * 115.55410 * 330.58612 * 18 17 16 20 20 C 1.52994 * 117.49932 * 116.25920 * 18 17 16 21 21 C 1.52999 * 117.49803 * 184.91645 * 18 17 16 22 22 C 1.52994 * 117.49884 * 0.02562 * 21 18 17 23 23 C 1.52998 * 117.49806 * 144.99798 * 21 18 17 24 24 H 1.09000 * 109.47703 * 300.00482 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47809 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47298 * 299.99321 * 3 2 1 29 29 H 1.09001 * 109.47411 * 60.00254 * 3 2 1 30 30 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46788 * 180.02562 * 12 2 1 32 32 H 1.08999 * 109.46950 * 299.99654 * 12 2 1 33 33 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 34 34 H 0.97000 * 120.00347 * 0.02562 * 16 14 13 35 35 H 1.08998 * 109.47267 * 300.00660 * 17 16 14 36 36 H 1.09002 * 109.46364 * 60.00754 * 17 16 14 37 37 H 1.09002 * 117.50032 * 214.98446 * 20 18 17 38 38 H 1.09001 * 117.49854 * 359.97438 * 20 18 17 39 39 H 1.09004 * 109.47504 * 59.99721 * 22 21 18 40 40 H 1.09005 * 109.47326 * 180.02562 * 22 21 18 41 41 H 1.09009 * 109.47065 * 299.99834 * 22 21 18 42 42 H 1.09002 * 109.47229 * 60.00043 * 23 21 18 43 43 H 1.09002 * 109.47234 * 180.02562 * 23 21 18 44 44 H 1.09003 * 109.47482 * 300.00150 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 1.8268 -0.4199 5.2204 10 1 1.8257 -2.5201 4.0078 11 1 3.8062 -1.1209 4.0082 12 6 2.0400 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 6 1.8769 -0.4914 -3.6695 15 8 2.5758 -1.4800 -3.7811 16 7 1.4273 0.1436 -4.7699 17 6 1.7812 -0.3570 -6.1006 18 6 1.1481 0.5386 -7.1673 19 1 0.2143 1.0227 -6.8811 20 6 2.0912 1.3128 -8.0903 21 6 1.3051 0.1151 -8.6292 22 6 2.0826 -1.1718 -8.9122 23 6 0.1394 0.4035 -9.5773 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.7088 1.1614 3.4844 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 0.9938 0.7578 -2.3564 34 1 0.8700 0.9325 -4.6810 35 1 2.8651 -0.3481 -6.2157 36 1 1.4119 -1.3761 -6.2153 37 1 1.7779 2.3062 -8.4115 38 1 3.1628 1.1845 -7.9372 39 1 1.5889 -2.0102 -8.4209 40 1 2.1147 -1.3479 -9.9875 41 1 3.0988 -1.0739 -8.5300 42 1 -0.0478 1.4769 -9.6069 43 1 0.3888 0.0501 -10.5778 44 1 -0.7535 -0.1113 -9.2225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458388422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:56 Heat of formation + Delta-G solvation = -26.520314 kcal Electronic energy + Delta-G solvation = -20626.437101 eV Core-core repulsion = 17578.990597 eV Total energy + Delta-G solvation = -3047.446503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.73668 -38.73945 -36.41624 -34.12355 -33.17751 -30.85329 -29.66654 -27.99009 -26.61257 -25.69091 -25.39627 -24.32424 -21.41750 -20.59522 -19.15532 -18.73716 -17.75845 -16.23186 -15.78096 -15.33152 -14.81035 -14.77697 -14.48329 -14.10355 -13.72562 -13.49594 -13.44980 -12.83033 -12.81388 -12.61399 -12.37092 -12.22565 -12.14115 -11.63420 -11.34887 -11.25781 -11.16196 -10.82217 -10.70474 -10.35698 -10.19262 -10.18697 -9.97758 -9.65274 -9.59381 -9.26834 -8.88814 -8.76637 -8.38132 -8.13213 -5.99499 -4.09338 3.06425 3.32180 3.36171 3.40103 3.48956 3.70916 4.35202 4.40823 4.47098 4.56585 4.77904 4.84772 5.08657 5.26913 5.27191 5.35397 5.53505 5.58665 5.63972 5.65414 5.69357 5.78321 5.86684 5.98017 6.09412 6.25709 6.40709 6.54381 6.72219 6.84069 6.86271 6.95108 7.06798 7.14690 7.35548 7.46622 7.59233 7.72493 8.04364 8.15690 8.41579 8.54271 8.90475 9.10354 9.56212 11.01942 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048914 B = 0.003082 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.290221 B = 9083.005934 C = 9321.735762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.733 5.733 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.752 5.752 17 C 0.174 3.826 18 C -0.160 4.160 19 H 0.109 0.891 20 C -0.169 4.169 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.085 0.915 25 H 0.005 0.995 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 2.791 -20.165 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.481 6.481 16 N -0.409 5.409 17 C 0.049 3.951 18 C -0.178 4.178 19 H 0.127 0.873 20 C -0.205 4.205 21 C -0.121 4.121 22 C -0.176 4.176 23 C -0.172 4.172 24 H 0.103 0.897 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.024 0.976 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.538 1.967 -20.083 20.238 hybrid contribution -0.228 0.374 0.958 1.053 sum -1.766 2.341 -19.126 19.349 Atomic orbital electron populations 1.21821 0.97810 0.99145 0.99971 1.18351 0.92770 0.92758 0.90548 1.21820 0.98576 0.98383 0.99979 1.20962 1.31458 1.12093 0.89906 0.92461 1.24879 0.94882 0.94932 0.98827 1.69800 1.36720 1.22762 1.23277 0.86626 0.79238 0.79792 0.82162 1.21359 1.20281 1.20285 1.21571 0.97853 0.95406 0.82436 1.45497 1.55645 1.33034 1.04604 1.16068 0.80557 0.83002 0.80699 1.90876 1.43211 1.27818 1.86158 1.45108 1.57628 1.33340 1.04860 1.20582 0.98932 0.96397 0.79157 1.22636 1.01137 1.02852 0.91224 0.87297 1.23374 0.97965 0.95895 1.03310 1.21601 0.99664 0.96562 0.94242 1.21385 0.99423 0.95215 1.01627 1.21363 0.96334 1.01379 0.98137 0.89666 0.97562 0.95465 0.95466 0.97554 0.89657 0.92992 0.93011 0.93010 0.77230 0.77344 0.91821 0.91550 0.88756 0.88531 0.91841 0.92105 0.92122 0.92468 0.92037 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.42 8.01 -34.44 -0.28 -13.70 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.81 9.35 55.43 0.52 -23.29 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 13 N -0.73 -13.59 4.96 -65.23 -0.32 -13.91 16 14 C 0.70 12.89 8.57 -86.93 -0.74 12.14 16 15 O -0.60 -13.53 16.34 5.29 0.09 -13.45 16 16 N -0.75 -10.29 5.56 -65.22 -0.36 -10.65 16 17 C 0.17 2.10 5.04 -4.04 -0.02 2.08 16 18 C -0.16 -1.45 5.56 -90.63 -0.50 -1.95 16 19 H 0.11 0.91 8.04 -51.92 -0.42 0.49 16 20 C -0.17 -1.37 9.47 -26.70 -0.25 -1.63 16 21 C -0.12 -0.97 2.70 -154.48 -0.42 -1.38 16 22 C -0.12 -0.95 8.86 37.15 0.33 -0.62 16 23 C -0.12 -0.77 9.85 37.16 0.37 -0.41 16 24 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.39 6.50 6.18 -40.82 -0.25 6.25 16 34 H 0.39 4.30 8.42 -40.82 -0.34 3.96 16 35 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 36 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 37 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 38 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.06 0.53 7.84 -51.93 -0.41 0.12 16 40 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 41 H 0.06 0.50 7.90 -51.92 -0.41 0.09 16 42 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 43 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -29.54 347.83 -8.67 -38.22 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.70 Total: 6.54 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.11 Total: -4.59 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.17 Total: -47.85 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.54 -8.67 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458388422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.695 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds