Wall clock time and date at job start Mon Mar 30 2020 01:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99883 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.52997 * 109.46903 * 240.00006 * 2 1 3 13 13 N 1.46499 * 109.47555 * 60.00409 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21583 * 119.99943 * 359.97438 * 14 13 12 16 16 N 1.34769 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.46507 * 120.00053 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47155 * 180.02562 * 17 16 14 19 19 H 1.09009 * 115.55410 * 330.58612 * 18 17 16 20 20 C 1.52994 * 117.49932 * 116.25920 * 18 17 16 21 21 C 1.52999 * 117.49803 * 184.91645 * 18 17 16 22 22 C 1.52994 * 117.49884 * 0.02562 * 21 18 17 23 23 C 1.52998 * 117.49806 * 144.99798 * 21 18 17 24 24 H 1.09000 * 109.47703 * 300.00482 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47809 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47298 * 299.99321 * 3 2 1 29 29 H 1.09001 * 109.47411 * 60.00254 * 3 2 1 30 30 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46788 * 180.02562 * 12 2 1 32 32 H 1.08999 * 109.46950 * 299.99654 * 12 2 1 33 33 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 34 34 H 0.97000 * 120.00347 * 0.02562 * 16 14 13 35 35 H 1.08998 * 109.47267 * 300.00660 * 17 16 14 36 36 H 1.09002 * 109.46364 * 60.00754 * 17 16 14 37 37 H 1.09002 * 117.50032 * 214.98446 * 20 18 17 38 38 H 1.09001 * 117.49854 * 359.97438 * 20 18 17 39 39 H 1.09004 * 109.47504 * 59.99721 * 22 21 18 40 40 H 1.09005 * 109.47326 * 180.02562 * 22 21 18 41 41 H 1.09009 * 109.47065 * 299.99834 * 22 21 18 42 42 H 1.09002 * 109.47229 * 60.00043 * 23 21 18 43 43 H 1.09002 * 109.47234 * 180.02562 * 23 21 18 44 44 H 1.09003 * 109.47482 * 300.00150 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 1.8268 -0.4199 5.2204 10 1 1.8257 -2.5201 4.0078 11 1 3.8062 -1.1209 4.0082 12 6 2.0400 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 6 1.8769 -0.4914 -3.6695 15 8 2.5758 -1.4800 -3.7811 16 7 1.4273 0.1436 -4.7699 17 6 1.7812 -0.3570 -6.1006 18 6 1.1481 0.5386 -7.1673 19 1 0.2143 1.0227 -6.8811 20 6 2.0912 1.3128 -8.0903 21 6 1.3051 0.1151 -8.6292 22 6 2.0826 -1.1718 -8.9122 23 6 0.1394 0.4035 -9.5773 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.7088 1.1614 3.4844 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 0.9938 0.7578 -2.3564 34 1 0.8700 0.9325 -4.6810 35 1 2.8651 -0.3481 -6.2157 36 1 1.4119 -1.3761 -6.2153 37 1 1.7779 2.3062 -8.4115 38 1 3.1628 1.1845 -7.9372 39 1 1.5889 -2.0102 -8.4209 40 1 2.1147 -1.3479 -9.9875 41 1 3.0988 -1.0739 -8.5300 42 1 -0.0478 1.4769 -9.6069 43 1 0.3888 0.0501 -10.5778 44 1 -0.7535 -0.1113 -9.2225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458388422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:55 Heat of formation + Delta-G solvation = -44.081761 kcal Electronic energy + Delta-G solvation = -20627.198622 eV Core-core repulsion = 17578.990597 eV Total energy + Delta-G solvation = -3048.208025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09677 -39.62051 -38.17818 -35.41206 -34.94662 -32.67786 -30.44436 -28.66403 -27.75574 -27.54945 -27.27236 -25.92188 -22.19994 -22.04380 -20.57895 -20.08684 -18.97800 -17.74809 -17.40239 -16.69164 -16.60848 -15.98192 -15.44567 -15.23515 -14.97971 -14.82194 -14.62824 -14.42648 -14.08598 -13.98355 -13.35976 -13.18463 -13.08544 -13.05441 -12.84685 -12.66038 -12.61433 -12.29883 -12.23730 -12.12703 -11.92590 -11.47157 -11.43477 -11.16019 -10.94004 -10.70345 -10.48196 -10.39441 -10.24480 -9.63018 -8.01383 -6.17023 1.45104 1.45893 1.52635 1.79598 2.20490 2.47055 2.76328 3.22184 3.42707 3.65448 3.84333 3.92281 4.19753 4.27479 4.42780 4.54133 4.55274 4.72341 4.73798 4.82004 4.85438 4.95587 5.00798 5.06946 5.07327 5.08001 5.10885 5.12311 5.21467 5.22908 5.31425 5.39501 5.47947 5.56520 5.64288 5.68106 5.68574 6.09429 6.16488 6.23169 6.44884 6.87047 7.17993 7.50561 7.64445 8.97485 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048914 B = 0.003082 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.290221 B = 9083.005934 C = 9321.735762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.282 1.282 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.725 5.725 14 C 0.695 3.305 15 O -0.644 6.644 16 N -0.731 5.731 17 C 0.175 3.825 18 C -0.164 4.164 19 H 0.123 0.877 20 C -0.164 4.164 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.114 4.114 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.406 0.594 34 H 0.411 0.589 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 3.866 -21.590 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.394 3.606 15 O -0.527 6.527 16 N -0.388 5.388 17 C 0.051 3.949 18 C -0.183 4.183 19 H 0.140 0.860 20 C -0.201 4.201 21 C -0.118 4.118 22 C -0.179 4.179 23 C -0.171 4.171 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.242 0.758 34 H 0.247 0.753 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.345 3.090 -21.541 21.887 hybrid contribution 0.024 0.031 1.338 1.339 sum -2.321 3.121 -20.203 20.574 Atomic orbital electron populations 1.21665 0.97081 0.98635 1.00382 1.18342 0.93276 0.93030 0.90125 1.21665 0.97885 0.97841 1.00386 1.21258 1.31816 1.12232 0.91620 0.93757 1.25448 0.95129 0.95599 1.00936 1.69901 1.36957 1.23254 1.23675 0.85816 0.78621 0.78819 0.79551 1.20738 1.20269 1.20285 1.21119 0.96641 0.94663 0.83284 1.45189 1.55829 1.33217 1.03853 1.16218 0.80252 0.82693 0.81400 1.90851 1.45165 1.29874 1.86791 1.44955 1.56608 1.33141 1.04131 1.20626 0.98509 0.96705 0.79053 1.22537 1.01772 1.03130 0.90812 0.85952 1.23430 0.97555 0.96635 1.02436 1.21720 1.00059 0.96455 0.93570 1.21414 0.98942 0.95135 1.02454 1.21379 0.95583 1.02007 0.98099 0.91842 0.94434 0.96389 0.96398 0.94437 0.91830 0.93000 0.94760 0.94746 0.75764 0.75315 0.93016 0.92769 0.87237 0.89091 0.92593 0.90747 0.92861 0.91626 0.91215 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.48 0.50 -52.93 -0.03 2.46 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -28.45 8.01 25.60 0.21 -28.25 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.52 5.15 84.66 0.44 1.96 16 7 N -0.90 -48.15 9.35 21.45 0.20 -47.95 16 8 Si 0.95 42.91 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.38 4.50 86.38 0.39 7.77 16 13 N -0.73 -25.98 4.96 -478.55 -2.37 -28.35 16 14 C 0.69 25.11 8.57 179.06 1.53 26.64 16 15 O -0.64 -29.20 16.34 -3.98 -0.06 -29.26 16 16 N -0.73 -18.79 5.56 -478.54 -2.66 -21.45 16 17 C 0.18 4.07 5.04 86.38 0.43 4.50 16 18 C -0.16 -2.62 5.56 -10.80 -0.06 -2.68 16 19 H 0.12 1.66 8.04 -2.38 -0.02 1.64 16 20 C -0.16 -2.29 9.47 30.61 0.29 -2.00 16 21 C -0.12 -1.65 2.70 -52.16 -0.14 -1.79 16 22 C -0.12 -1.81 8.86 71.98 0.64 -1.17 16 23 C -0.11 -1.23 9.85 71.98 0.71 -0.52 16 24 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 25 H 0.04 1.40 6.86 -2.38 -0.02 1.38 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 29 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 30 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 31 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 12.39 6.18 -92.71 -0.57 11.81 16 34 H 0.41 7.84 8.42 -92.71 -0.78 7.06 16 35 H 0.05 1.34 7.87 -2.39 -0.02 1.32 16 36 H 0.05 1.41 7.77 -2.39 -0.02 1.39 16 37 H 0.11 1.23 8.05 -2.39 -0.02 1.21 16 38 H 0.09 1.39 7.94 -2.39 -0.02 1.37 16 39 H 0.06 0.90 7.84 -2.38 -0.02 0.89 16 40 H 0.07 0.88 7.92 -2.38 -0.02 0.86 16 41 H 0.05 0.85 7.90 -2.38 -0.02 0.83 16 42 H 0.06 0.61 7.90 -2.39 -0.02 0.59 16 43 H 0.07 0.65 7.92 -2.39 -0.02 0.63 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -63.33 347.83 2.32 -61.01 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.37 Total: 23.75 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.57 Total: -2.67 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -4.84 Total: -97.76 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.06 Total: -29.26 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.33 2.32 -61.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458388422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.924 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds