Wall clock time and date at job start Mon Mar 30 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47223 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00288 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 C 1.53002 * 109.47143 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.46932 * 295.00126 * 9 7 6 11 11 C 1.34781 * 119.99929 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99908 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99759 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00298 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99718 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00190 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00015 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46967 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47142 * 120.00484 * 19 17 15 22 22 H 1.48499 * 109.47265 * 240.00952 * 19 17 15 23 23 C 1.52999 * 109.46961 * 240.00649 * 2 1 3 24 24 H 1.09001 * 109.47066 * 299.99881 * 1 2 3 25 25 H 1.08996 * 109.47747 * 59.99547 * 1 2 3 26 26 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47050 * 300.00346 * 3 2 1 29 29 H 1.09001 * 109.47002 * 60.00080 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 34 34 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 36 36 H 1.08997 * 109.47011 * 55.00129 * 9 7 6 37 37 H 1.08999 * 109.47369 * 175.00236 * 9 7 6 38 38 H 0.96998 * 120.00102 * 359.97438 * 10 9 7 39 39 H 0.97002 * 119.99623 * 359.97438 * 13 11 10 40 40 H 1.08999 * 109.46733 * 299.99385 * 14 13 11 41 41 H 1.08996 * 109.47500 * 59.99451 * 14 13 11 42 42 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47486 * 59.99547 * 23 2 1 44 44 H 1.09002 * 109.46716 * 299.99630 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 1 3.9334 0.3075 -1.2488 9 6 4.0804 -1.4414 -2.4984 10 7 5.5404 -1.3380 -2.5601 11 6 6.2134 -1.9027 -3.5823 12 8 5.6087 -2.4983 -4.4529 13 7 7.5566 -1.8080 -3.6388 14 6 8.2881 -2.4223 -4.7496 15 6 9.7644 -2.1732 -4.5776 16 1 10.1220 -1.6136 -3.7259 17 6 10.6586 -2.6605 -5.5071 18 7 10.2231 -3.3422 -6.5440 19 14 12.4886 -2.3523 -5.2937 20 1 12.7170 -1.5664 -4.0544 21 1 13.2010 -3.6514 -5.1938 22 1 13.0026 -1.5944 -6.4627 23 6 2.0399 -0.7211 -1.2493 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7490 1.2491 31 1 1.6767 -0.2075 2.1392 32 1 3.9329 0.3070 1.2496 33 1 3.9334 -1.2350 2.1391 34 1 5.1704 -1.4415 0.0004 35 1 3.7175 -2.4693 -0.0002 36 1 3.7920 -2.4917 -2.4547 37 1 3.6457 -0.9819 -3.3861 38 1 6.0228 -0.8626 -1.8658 39 1 8.0390 -1.3331 -2.9440 40 1 8.0991 -3.4957 -4.7595 41 1 7.9535 -1.9858 -5.6906 42 1 10.8522 -3.6848 -7.1982 43 1 1.6765 -0.2073 -2.1393 44 1 1.6765 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458728513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:20 Heat of formation + Delta-G solvation = -73.191961 kcal Electronic energy + Delta-G solvation = -20694.908579 eV Core-core repulsion = 17645.438242 eV Total energy + Delta-G solvation = -3049.470338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.08714 -38.89764 -35.27108 -34.00933 -32.86615 -32.25952 -31.16896 -27.61038 -27.32627 -26.55944 -25.32180 -22.48302 -22.19762 -20.57339 -20.09815 -18.62934 -17.96114 -16.14672 -15.71467 -15.47217 -15.06856 -14.85985 -14.71756 -14.34668 -14.11638 -13.82119 -13.48757 -13.04718 -13.03026 -12.70260 -12.24799 -12.11924 -11.99681 -11.89179 -11.66210 -11.65483 -11.44891 -11.15719 -11.03141 -10.90209 -10.87072 -10.37727 -10.27438 -10.23317 -10.12652 -9.34051 -9.31263 -8.72127 -8.60125 -7.69303 -6.12386 -4.18629 3.25923 3.32129 3.35338 3.48652 4.03656 4.34773 4.38751 4.40791 4.47661 4.77826 4.92482 5.05931 5.11992 5.14248 5.18841 5.23695 5.30926 5.35822 5.43288 5.43547 5.51415 5.62340 5.69692 5.73258 5.78833 5.81150 5.85109 5.96057 6.00839 6.06434 6.12067 6.16442 6.20866 6.37628 6.96985 7.18715 7.57414 7.60868 7.61942 7.96203 8.09531 8.81178 9.01092 9.39218 9.53712 10.97981 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042045 B = 0.003009 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.786948 B = 9303.024708 C = 9631.540331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.099 4.099 8 H 0.078 0.922 9 C 0.146 3.854 10 N -0.756 5.756 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.731 5.731 14 C 0.267 3.733 15 C -0.540 4.540 16 H 0.063 0.937 17 C 0.062 3.938 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.100 4.100 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.390 0.610 39 H 0.385 0.615 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.265 0.735 43 H 0.065 0.935 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 8.383 17.107 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.118 4.118 8 H 0.097 0.903 9 C 0.021 3.979 10 N -0.414 5.414 11 C 0.391 3.609 12 O -0.482 6.482 13 N -0.383 5.383 14 C 0.145 3.855 15 C -0.578 4.578 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.138 4.138 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.223 0.777 39 H 0.217 0.783 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.257 7.701 16.078 24.811 hybrid contribution 1.461 0.529 0.644 1.682 sum -15.796 8.231 16.722 24.431 Atomic orbital electron populations 1.21864 0.94721 1.01706 1.01605 1.20516 0.95062 0.95555 0.95276 1.21985 1.01606 0.95242 1.01432 1.21595 0.95662 1.00334 0.96935 1.21585 0.95568 1.00895 0.97830 1.21597 1.00508 0.99479 0.93633 1.21455 0.95898 1.00126 0.94304 0.90346 1.21092 0.79639 1.00310 0.96855 1.45169 1.07075 1.61489 1.27680 1.16175 0.82643 0.80063 0.82003 1.90866 1.68257 1.48553 1.40515 1.45707 1.03887 1.58962 1.29743 1.18966 0.89585 0.93367 0.83546 1.21273 0.90900 1.36141 1.09532 0.91930 1.24953 0.99457 0.94803 0.94893 1.69996 1.34922 1.35516 1.11898 0.86363 0.84398 0.78014 0.78120 1.19679 1.20832 1.20827 1.21567 0.94135 1.00838 0.97288 0.92840 0.92648 0.92696 0.91908 0.92767 0.93007 0.92019 0.92296 0.91721 0.92167 0.91793 0.91758 0.92152 0.92164 0.77713 0.78256 0.95799 0.95799 0.92550 0.91619 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.47 37.15 0.31 -0.64 16 2 C -0.06 -0.47 0.77 -154.51 -0.12 -0.59 16 3 C -0.15 -1.04 7.78 37.16 0.29 -0.76 16 4 C -0.11 -0.78 4.73 -26.73 -0.13 -0.91 16 5 C -0.12 -0.92 5.65 -26.73 -0.15 -1.07 16 6 C -0.11 -1.03 5.08 -26.73 -0.14 -1.16 16 7 C -0.10 -0.94 1.95 -90.59 -0.18 -1.11 16 8 H 0.08 0.72 6.43 -51.93 -0.33 0.39 16 9 C 0.15 1.94 5.06 -4.04 -0.02 1.92 16 10 N -0.76 -11.59 5.29 -65.22 -0.34 -11.93 16 11 C 0.69 14.77 8.57 -86.92 -0.74 14.03 16 12 O -0.60 -15.62 16.34 5.29 0.09 -15.54 16 13 N -0.73 -16.10 5.55 -66.41 -0.37 -16.47 16 14 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 15 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 16 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.10 -0.85 4.01 -26.70 -0.11 -0.96 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 4.80 -51.93 -0.25 0.21 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.60 7.18 -51.93 -0.37 0.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.39 4.81 7.67 -40.82 -0.31 4.50 16 39 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -32.72 342.45 -8.99 -41.72 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.82 Total: 4.34 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.42 Total: 2.43 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.02 Total: -54.19 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.72 -8.99 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458728513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.476 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds