Wall clock time and date at job start Mon Mar 30 2020 01:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47223 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00288 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 C 1.53002 * 109.47143 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.46932 * 295.00126 * 9 7 6 11 11 C 1.34781 * 119.99929 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99908 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99759 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00298 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99718 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00190 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00015 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46967 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47142 * 120.00484 * 19 17 15 22 22 H 1.48499 * 109.47265 * 240.00952 * 19 17 15 23 23 C 1.52999 * 109.46961 * 240.00649 * 2 1 3 24 24 H 1.09001 * 109.47066 * 299.99881 * 1 2 3 25 25 H 1.08996 * 109.47747 * 59.99547 * 1 2 3 26 26 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47050 * 300.00346 * 3 2 1 29 29 H 1.09001 * 109.47002 * 60.00080 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 34 34 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 36 36 H 1.08997 * 109.47011 * 55.00129 * 9 7 6 37 37 H 1.08999 * 109.47369 * 175.00236 * 9 7 6 38 38 H 0.96998 * 120.00102 * 359.97438 * 10 9 7 39 39 H 0.97002 * 119.99623 * 359.97438 * 13 11 10 40 40 H 1.08999 * 109.46733 * 299.99385 * 14 13 11 41 41 H 1.08996 * 109.47500 * 59.99451 * 14 13 11 42 42 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47486 * 59.99547 * 23 2 1 44 44 H 1.09002 * 109.46716 * 299.99630 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 1 3.9334 0.3075 -1.2488 9 6 4.0804 -1.4414 -2.4984 10 7 5.5404 -1.3380 -2.5601 11 6 6.2134 -1.9027 -3.5823 12 8 5.6087 -2.4983 -4.4529 13 7 7.5566 -1.8080 -3.6388 14 6 8.2881 -2.4223 -4.7496 15 6 9.7644 -2.1732 -4.5776 16 1 10.1220 -1.6136 -3.7259 17 6 10.6586 -2.6605 -5.5071 18 7 10.2231 -3.3422 -6.5440 19 14 12.4886 -2.3523 -5.2937 20 1 12.7170 -1.5664 -4.0544 21 1 13.2010 -3.6514 -5.1938 22 1 13.0026 -1.5944 -6.4627 23 6 2.0399 -0.7211 -1.2493 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7490 1.2491 31 1 1.6767 -0.2075 2.1392 32 1 3.9329 0.3070 1.2496 33 1 3.9334 -1.2350 2.1391 34 1 5.1704 -1.4415 0.0004 35 1 3.7175 -2.4693 -0.0002 36 1 3.7920 -2.4917 -2.4547 37 1 3.6457 -0.9819 -3.3861 38 1 6.0228 -0.8626 -1.8658 39 1 8.0390 -1.3331 -2.9440 40 1 8.0991 -3.4957 -4.7595 41 1 7.9535 -1.9858 -5.6906 42 1 10.8522 -3.6848 -7.1982 43 1 1.6765 -0.2073 -2.1393 44 1 1.6765 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458728513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:19 Heat of formation + Delta-G solvation = -94.975118 kcal Electronic energy + Delta-G solvation = -20695.853168 eV Core-core repulsion = 17645.438242 eV Total energy + Delta-G solvation = -3050.414926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12501 -40.29941 -36.57782 -35.93514 -34.40144 -33.63979 -32.16291 -29.28193 -28.14847 -27.20169 -26.60030 -24.45300 -22.93384 -21.84845 -21.43569 -19.78365 -19.22720 -18.03726 -17.34584 -16.66061 -16.45375 -16.10152 -15.75001 -15.42024 -15.05138 -15.03364 -14.69696 -14.58141 -14.06380 -14.02854 -13.70987 -13.42632 -12.89686 -12.85033 -12.73282 -12.71925 -12.65006 -12.28662 -12.21214 -12.16874 -11.78235 -11.73675 -11.43987 -11.28800 -11.04843 -10.86401 -10.81219 -10.80667 -10.24616 -9.55999 -8.27835 -6.44272 1.43988 1.45728 1.58942 1.92885 2.26265 2.40475 3.07187 3.55076 3.65446 3.74678 3.82078 4.09113 4.21442 4.34960 4.43771 4.51224 4.58080 4.64533 4.72008 4.78446 4.85428 4.89873 4.96300 5.05594 5.10245 5.12813 5.16277 5.21705 5.26335 5.27707 5.33100 5.35113 5.45302 5.49142 5.50859 5.55610 5.60549 5.69500 5.73105 5.86098 6.28838 6.67976 7.25231 7.33653 7.74440 8.84912 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042045 B = 0.003009 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.786948 B = 9303.024708 C = 9631.540331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.085 4.085 8 H 0.089 0.911 9 C 0.144 3.856 10 N -0.729 5.729 11 C 0.689 3.311 12 O -0.652 6.652 13 N -0.723 5.723 14 C 0.285 3.715 15 C -0.553 4.553 16 H 0.084 0.916 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.987 3.013 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.100 4.100 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.409 0.591 39 H 0.405 0.595 40 H -0.016 1.016 41 H -0.015 1.015 42 H 0.269 0.731 43 H 0.063 0.937 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.100 10.014 19.520 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.103 4.103 8 H 0.107 0.893 9 C 0.020 3.980 10 N -0.387 5.387 11 C 0.388 3.612 12 O -0.535 6.535 13 N -0.377 5.377 14 C 0.161 3.839 15 C -0.591 4.591 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.810 3.190 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.138 4.138 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.246 0.754 39 H 0.240 0.760 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.597 9.383 18.578 26.620 hybrid contribution 1.138 0.007 -0.106 1.143 sum -15.459 9.390 18.472 25.853 Atomic orbital electron populations 1.21853 0.94183 1.01787 1.01993 1.20492 0.95488 0.95598 0.94520 1.21983 1.01520 0.94946 1.01780 1.21593 0.95383 1.00260 0.97186 1.21556 0.95770 1.01072 0.97043 1.21595 1.00387 0.99175 0.94055 1.21365 0.96541 1.00007 0.92427 0.89296 1.21271 0.77992 1.00123 0.98615 1.44936 1.07871 1.59752 1.26119 1.16373 0.82321 0.79894 0.82591 1.90833 1.69132 1.50736 1.42807 1.45291 1.04273 1.59070 1.29090 1.18406 0.90725 0.90990 0.83729 1.21632 0.90714 1.36394 1.10353 0.89780 1.26090 1.05316 0.94097 0.94220 1.70157 1.37155 1.36658 1.13077 0.85077 0.77002 0.78102 0.78795 1.17585 1.20452 1.20435 1.21573 0.93210 1.00886 0.98146 0.92009 0.92725 0.92806 0.91989 0.92975 0.92181 0.92377 0.91276 0.91020 0.91606 0.91953 0.92625 0.93455 0.93262 0.75424 0.76015 0.99770 0.99753 0.92242 0.91805 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.47 71.98 0.61 -1.04 16 2 C -0.06 -0.77 0.77 -52.18 -0.04 -0.81 16 3 C -0.15 -1.74 7.78 71.98 0.56 -1.18 16 4 C -0.11 -1.30 4.73 30.59 0.14 -1.15 16 5 C -0.12 -1.49 5.65 30.60 0.17 -1.32 16 6 C -0.11 -1.86 5.08 30.59 0.16 -1.70 16 7 C -0.08 -1.48 1.95 -10.78 -0.02 -1.50 16 8 H 0.09 1.43 6.43 -2.39 -0.02 1.41 16 9 C 0.14 3.80 5.06 86.38 0.44 4.24 16 10 N -0.73 -21.85 5.29 -478.53 -2.53 -24.38 16 11 C 0.69 29.85 8.57 179.05 1.53 31.38 16 12 O -0.65 -35.14 16.34 -4.00 -0.07 -35.21 16 13 N -0.72 -32.13 5.55 -482.30 -2.68 -34.81 16 14 C 0.28 16.19 5.43 85.63 0.46 16.66 16 15 C -0.55 -30.60 9.28 25.60 0.24 -30.36 16 16 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 19 Si 0.99 42.69 29.54 68.60 2.03 44.71 16 20 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 C -0.10 -1.58 4.01 30.61 0.12 -1.46 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.75 4.80 -2.39 -0.01 0.74 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.84 6.43 -2.39 -0.02 0.83 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.03 7.18 -2.39 -0.02 1.01 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 9.29 7.67 -92.71 -0.71 8.58 16 39 H 0.40 14.71 8.34 -92.71 -0.77 13.94 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 42 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.77 342.45 1.37 -71.40 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.51 Total: 22.70 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 4.84 Total: 12.33 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.92 Total: -115.94 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.07 Total: -35.21 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.77 1.37 -71.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458728513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.575 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds