Wall clock time and date at job start Mon Mar 30 2020 01:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.50694 * 109.47018 * 240.00191 * 2 1 3 5 5 H 1.08000 * 119.99792 * 241.34706 * 4 2 1 6 6 C 1.37882 * 120.00338 * 61.34360 * 4 2 1 7 7 N 1.31508 * 120.00056 * 193.97613 * 6 4 2 8 8 Si 1.86797 * 119.99614 * 13.98046 * 6 4 2 9 9 H 1.48494 * 109.47401 * 84.54873 * 8 6 4 10 10 H 1.48510 * 109.46888 * 204.54829 * 8 6 4 11 11 H 1.48502 * 109.47430 * 324.54394 * 8 6 4 12 12 C 1.52994 * 109.46961 * 119.99909 * 2 1 3 13 13 N 1.46502 * 109.47140 * 299.99896 * 12 2 1 14 14 C 1.34779 * 119.99785 * 180.02562 * 13 12 2 15 15 O 1.21584 * 120.00047 * 0.27531 * 14 13 12 16 16 N 1.34777 * 119.99902 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00055 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46954 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46692 * 180.02562 * 18 17 16 20 20 C 1.52996 * 115.55190 * 34.33325 * 19 18 17 21 21 C 1.53002 * 117.49426 * 248.62146 * 19 18 17 22 22 C 1.53004 * 60.00216 * 252.51369 * 21 19 18 23 23 H 1.09003 * 109.47065 * 309.37096 * 1 2 3 24 24 H 1.08998 * 109.46912 * 69.36900 * 1 2 3 25 25 H 1.08995 * 109.46738 * 189.36745 * 1 2 3 26 26 H 1.09005 * 109.46906 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47339 * 300.00172 * 3 2 1 28 28 H 1.08999 * 109.47097 * 59.99953 * 3 2 1 29 29 H 0.96997 * 120.00065 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46865 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47374 * 60.00155 * 12 2 1 32 32 H 0.96998 * 120.00441 * 0.02562 * 13 12 2 33 33 H 0.97006 * 119.99949 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.47219 * 300.00516 * 17 16 14 35 35 H 1.09003 * 109.46636 * 59.99763 * 17 16 14 36 36 H 1.09004 * 109.47509 * 300.00168 * 18 17 16 37 37 H 1.09003 * 109.47414 * 60.00520 * 18 17 16 38 38 H 1.08994 * 109.47478 * 85.58344 * 20 19 18 39 39 H 1.08996 * 109.46942 * 205.58515 * 20 19 18 40 40 H 1.09001 * 109.46695 * 325.57726 * 20 19 18 41 41 H 1.09001 * 117.50311 * 0.02562 * 21 19 18 42 42 H 1.09000 * 117.49650 * 145.02627 * 21 19 18 43 43 H 1.09001 * 117.50154 * 252.51622 * 22 21 19 44 44 H 1.09000 * 117.49930 * 107.49036 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2233 -2.4826 7 7 1.9158 -0.9725 -3.5459 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5812 -1.4761 3.7811 16 7 1.4281 0.1443 4.7700 17 6 1.7820 -0.3562 6.1006 18 6 1.1488 0.5393 7.1673 19 6 1.5189 0.0169 8.5569 20 6 2.9119 -0.6039 8.6791 21 6 0.3986 -0.5874 9.4059 22 6 0.9779 0.7821 9.7665 23 1 -0.3633 0.6519 0.7945 24 1 -0.3633 0.3621 -0.9618 25 1 -0.3632 -1.0139 0.1673 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6980 -0.6298 -4.4268 30 1 3.1301 -0.7216 1.2490 31 1 1.6767 -1.7489 1.2492 32 1 0.9938 0.7579 2.3564 33 1 0.8701 0.9328 4.6809 34 1 1.4130 -1.3754 6.2154 35 1 2.8659 -0.3472 6.2157 36 1 1.5182 1.5584 7.0523 37 1 0.0648 0.5307 7.0524 38 1 3.6436 0.1803 8.8730 39 1 2.9199 -1.3196 9.5012 40 1 3.1646 -1.1150 7.7501 41 1 -0.6020 -0.6132 8.9743 42 1 0.6539 -1.4276 10.0516 43 1 1.6143 0.8428 10.6493 44 1 0.3584 1.6576 9.5722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458755817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:09 Heat of formation + Delta-G solvation = -4.173223 kcal Electronic energy + Delta-G solvation = -20654.869949 eV Core-core repulsion = 17608.392488 eV Total energy + Delta-G solvation = -3046.477461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.76507 -38.69787 -36.84794 -34.72100 -33.25770 -31.55081 -30.36759 -28.28236 -26.38465 -25.86038 -24.86649 -23.33868 -22.68496 -20.69092 -19.27108 -19.11969 -17.89348 -16.22934 -16.01091 -15.72917 -15.51839 -15.21786 -14.68128 -14.33760 -13.87952 -13.72560 -13.31327 -13.10368 -12.88140 -12.60087 -12.46696 -12.20493 -12.19362 -12.03112 -11.90128 -11.62711 -11.43501 -11.21367 -10.43725 -10.40721 -10.28978 -10.15597 -10.04713 -9.90952 -9.80008 -9.11707 -9.00130 -8.67262 -8.47143 -8.29994 -6.13434 -4.10453 3.01667 3.24725 3.31674 3.39205 3.41643 3.59614 4.33344 4.36580 4.40207 4.58115 4.59801 4.81855 5.00094 5.12395 5.17419 5.30301 5.32995 5.50819 5.55941 5.58686 5.75839 5.79147 5.80374 5.83839 5.91652 6.05455 6.06869 6.10498 6.37039 6.47370 6.55508 6.62595 6.64470 6.73034 6.85520 7.02104 7.22665 7.29087 7.45680 7.74717 8.35765 8.49376 8.92138 8.98470 9.50528 10.99763 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046491 B = 0.003181 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.119941 B = 8801.041807 C = 9059.396551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.147 4.147 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.249 1.249 12 C 0.160 3.840 13 N -0.739 5.739 14 C 0.698 3.302 15 O -0.596 6.596 16 N -0.756 5.756 17 C 0.141 3.859 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.175 4.175 22 C -0.176 4.176 23 H 0.021 0.979 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.392 0.608 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 6.366 23.323 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.175 1.175 12 C 0.037 3.963 13 N -0.393 5.393 14 C 0.398 3.602 15 O -0.475 6.475 16 N -0.412 5.412 17 C 0.016 3.984 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.183 4.183 21 C -0.212 4.212 22 C -0.213 4.213 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.225 0.775 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.214 5.384 23.193 24.026 hybrid contribution -0.903 1.751 -0.332 1.997 sum -4.117 7.135 22.861 24.300 Atomic orbital electron populations 1.22286 0.97891 0.99822 0.99831 1.18727 0.92485 0.92258 0.93802 1.22351 1.01204 0.98339 0.98447 1.20728 1.33994 1.12326 0.87975 0.90498 1.24973 0.94698 0.97300 0.95786 1.69949 1.48257 1.35910 0.98714 0.87287 0.79314 0.85593 0.75931 1.21387 1.23454 1.17542 1.21365 0.98348 0.95429 0.81119 1.45497 1.55933 1.33104 1.04811 1.16034 0.80577 0.82993 0.80605 1.90899 1.42631 1.27868 1.86054 1.45158 1.57585 1.33348 1.05151 1.21213 0.99984 0.97512 0.79665 1.21304 1.00840 0.99336 0.91652 1.21358 0.95562 1.03760 0.91619 1.21515 0.93646 1.00317 1.02832 1.23188 0.97971 0.96733 1.03289 1.23040 1.03903 0.95548 0.98807 0.96027 0.92597 0.93403 0.92792 0.94125 0.95234 0.92571 0.92222 0.92137 0.77461 0.77496 0.91728 0.91320 0.90924 0.91139 0.92126 0.92437 0.90837 0.88795 0.88800 0.88810 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 7.53 37.16 0.28 -2.60 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -2.98 7.52 37.16 0.28 -2.70 16 4 C -0.51 -13.86 8.62 -34.44 -0.30 -14.16 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 6 C 0.07 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 8 Si 0.89 21.14 22.79 -169.99 -3.87 17.27 16 9 H -0.29 -6.81 7.10 56.52 0.40 -6.40 16 10 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.25 -5.39 4.65 56.52 0.26 -5.13 16 12 C 0.16 3.30 4.49 -4.04 -0.02 3.28 16 13 N -0.74 -12.43 5.01 -65.22 -0.33 -12.75 16 14 C 0.70 11.97 8.57 -86.91 -0.74 11.23 16 15 O -0.60 -12.77 16.34 5.29 0.09 -12.69 16 16 N -0.76 -9.32 5.56 -65.22 -0.36 -9.69 16 17 C 0.14 1.54 4.68 -4.04 -0.02 1.52 16 18 C -0.09 -0.74 5.51 -26.73 -0.15 -0.89 16 19 C -0.12 -0.94 2.47 -154.50 -0.38 -1.32 16 20 C -0.13 -0.98 9.49 37.16 0.35 -0.62 16 21 C -0.17 -1.24 9.82 -26.73 -0.26 -1.50 16 22 C -0.18 -1.17 9.97 -26.72 -0.27 -1.44 16 23 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 24 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 25 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 28 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.39 5.62 6.27 -40.82 -0.26 5.37 16 33 H 0.39 3.68 8.49 -40.82 -0.35 3.33 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.82 6.45 -51.93 -0.33 0.48 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 40 H 0.07 0.64 5.59 -51.93 -0.29 0.35 16 41 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 42 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -31.82 335.80 -7.49 -39.31 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.45 Total: 6.15 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.40 Total: -6.65 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.08 Total: -48.45 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -3.87 Total: 17.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.82 -7.49 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458755817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.138 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds