Wall clock time and date at job start Mon Mar 30 2020 01:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.50694 * 109.47018 * 240.00191 * 2 1 3 5 5 H 1.08000 * 119.99792 * 241.34706 * 4 2 1 6 6 C 1.37882 * 120.00338 * 61.34360 * 4 2 1 7 7 N 1.31508 * 120.00056 * 193.97613 * 6 4 2 8 8 Si 1.86797 * 119.99614 * 13.98046 * 6 4 2 9 9 H 1.48494 * 109.47401 * 84.54873 * 8 6 4 10 10 H 1.48510 * 109.46888 * 204.54829 * 8 6 4 11 11 H 1.48502 * 109.47430 * 324.54394 * 8 6 4 12 12 C 1.52994 * 109.46961 * 119.99909 * 2 1 3 13 13 N 1.46502 * 109.47140 * 299.99896 * 12 2 1 14 14 C 1.34779 * 119.99785 * 180.02562 * 13 12 2 15 15 O 1.21584 * 120.00047 * 0.27531 * 14 13 12 16 16 N 1.34777 * 119.99902 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00055 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46954 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46692 * 180.02562 * 18 17 16 20 20 C 1.52996 * 115.55190 * 34.33325 * 19 18 17 21 21 C 1.53002 * 117.49426 * 248.62146 * 19 18 17 22 22 C 1.53004 * 60.00216 * 252.51369 * 21 19 18 23 23 H 1.09003 * 109.47065 * 309.37096 * 1 2 3 24 24 H 1.08998 * 109.46912 * 69.36900 * 1 2 3 25 25 H 1.08995 * 109.46738 * 189.36745 * 1 2 3 26 26 H 1.09005 * 109.46906 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47339 * 300.00172 * 3 2 1 28 28 H 1.08999 * 109.47097 * 59.99953 * 3 2 1 29 29 H 0.96997 * 120.00065 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46865 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47374 * 60.00155 * 12 2 1 32 32 H 0.96998 * 120.00441 * 0.02562 * 13 12 2 33 33 H 0.97006 * 119.99949 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.47219 * 300.00516 * 17 16 14 35 35 H 1.09003 * 109.46636 * 59.99763 * 17 16 14 36 36 H 1.09004 * 109.47509 * 300.00168 * 18 17 16 37 37 H 1.09003 * 109.47414 * 60.00520 * 18 17 16 38 38 H 1.08994 * 109.47478 * 85.58344 * 20 19 18 39 39 H 1.08996 * 109.46942 * 205.58515 * 20 19 18 40 40 H 1.09001 * 109.46695 * 325.57726 * 20 19 18 41 41 H 1.09001 * 117.50311 * 0.02562 * 21 19 18 42 42 H 1.09000 * 117.49650 * 145.02627 * 21 19 18 43 43 H 1.09001 * 117.50154 * 252.51622 * 22 21 19 44 44 H 1.09000 * 117.49930 * 107.49036 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2233 -2.4826 7 7 1.9158 -0.9725 -3.5459 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5812 -1.4761 3.7811 16 7 1.4281 0.1443 4.7700 17 6 1.7820 -0.3562 6.1006 18 6 1.1488 0.5393 7.1673 19 6 1.5189 0.0169 8.5569 20 6 2.9119 -0.6039 8.6791 21 6 0.3986 -0.5874 9.4059 22 6 0.9779 0.7821 9.7665 23 1 -0.3633 0.6519 0.7945 24 1 -0.3633 0.3621 -0.9618 25 1 -0.3632 -1.0139 0.1673 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6980 -0.6298 -4.4268 30 1 3.1301 -0.7216 1.2490 31 1 1.6767 -1.7489 1.2492 32 1 0.9938 0.7579 2.3564 33 1 0.8701 0.9328 4.6809 34 1 1.4130 -1.3754 6.2154 35 1 2.8659 -0.3472 6.2157 36 1 1.5182 1.5584 7.0523 37 1 0.0648 0.5307 7.0524 38 1 3.6436 0.1803 8.8730 39 1 2.9199 -1.3196 9.5012 40 1 3.1646 -1.1150 7.7501 41 1 -0.6020 -0.6132 8.9743 42 1 0.6539 -1.4276 10.0516 43 1 1.6143 0.8428 10.6493 44 1 0.3584 1.6576 9.5722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458755817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:08 Heat of formation + Delta-G solvation = -26.808670 kcal Electronic energy + Delta-G solvation = -20655.851496 eV Core-core repulsion = 17608.392488 eV Total energy + Delta-G solvation = -3047.459007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09390 -39.40241 -38.47420 -35.85266 -34.97079 -33.43932 -31.28140 -28.95864 -28.00672 -27.43501 -26.81984 -24.29592 -23.21274 -22.02417 -20.91446 -20.07665 -19.08236 -18.03125 -17.31442 -17.07586 -16.81794 -16.20302 -15.77814 -15.50482 -15.34924 -14.94461 -14.70141 -14.47734 -14.34700 -13.96896 -13.85675 -13.73675 -13.11815 -13.00401 -12.90787 -12.53570 -12.37898 -12.19657 -12.12606 -12.02554 -11.93872 -11.74791 -11.35665 -11.05018 -10.96613 -10.60660 -10.46042 -10.38369 -10.30118 -9.66490 -8.29039 -6.30882 1.37840 1.39221 1.52446 1.79210 2.21560 2.36164 2.87286 3.06991 3.39239 3.74911 3.87406 4.04072 4.09193 4.14294 4.27534 4.35650 4.43290 4.46585 4.60731 4.75989 4.83825 4.84814 4.87412 4.89236 4.92022 4.96522 5.06824 5.08209 5.10283 5.16191 5.20720 5.23046 5.31748 5.41619 5.45389 5.57608 5.58549 5.74625 5.81709 6.09433 6.32694 6.73586 7.19644 7.33906 7.65682 8.88391 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046491 B = 0.003181 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.119941 B = 8801.041807 C = 9059.396551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.519 4.519 5 H 0.026 0.974 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.202 1.202 12 C 0.177 3.823 13 N -0.725 5.725 14 C 0.695 3.305 15 O -0.644 6.644 16 N -0.733 5.733 17 C 0.141 3.859 18 C -0.081 4.081 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.179 4.179 22 C -0.166 4.166 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.264 0.736 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.409 0.591 33 H 0.412 0.588 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 9.647 25.844 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.557 4.557 5 H 0.044 0.956 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.125 1.125 12 C 0.052 3.948 13 N -0.382 5.382 14 C 0.395 3.605 15 O -0.526 6.526 16 N -0.390 5.390 17 C 0.017 3.983 18 C -0.119 4.119 19 C -0.136 4.136 20 C -0.183 4.183 21 C -0.216 4.216 22 C -0.203 4.203 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.246 0.754 33 H 0.248 0.752 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.211 8.721 25.784 27.713 hybrid contribution -0.217 0.584 -1.038 1.211 sum -5.428 9.305 24.746 26.989 Atomic orbital electron populations 1.22209 0.95972 1.00605 1.00914 1.18649 0.93848 0.93153 0.91598 1.22285 1.00951 0.96719 1.00311 1.21047 1.32930 1.11101 0.90657 0.95561 1.25890 0.95395 1.01776 0.95143 1.70116 1.50772 1.38377 0.99431 0.86301 0.79416 0.79697 0.76984 1.20889 1.24551 1.12539 1.20864 0.96977 0.94542 0.82410 1.45088 1.56083 1.33343 1.03651 1.16211 0.80245 0.82638 0.81423 1.90878 1.44798 1.30175 1.86753 1.44967 1.56582 1.33203 1.04241 1.21294 0.99688 0.97659 0.79668 1.21223 1.01233 0.99008 0.90432 1.21372 0.95511 1.04792 0.91934 1.21499 0.94189 1.00482 1.02171 1.23260 0.97911 0.97254 1.03210 1.23103 1.03472 0.95538 0.98154 0.91415 0.93590 0.94211 0.93589 0.94650 0.90634 0.92668 0.94369 0.94608 0.75407 0.75167 0.93271 0.92397 0.89677 0.89935 0.91721 0.92021 0.92405 0.88434 0.88732 0.88292 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 7.53 71.99 0.54 -4.72 16 2 C 0.03 1.22 0.50 -52.93 -0.03 1.20 16 3 C -0.15 -5.41 7.52 71.98 0.54 -4.87 16 4 C -0.52 -28.94 8.62 25.60 0.22 -28.72 16 5 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 6 C 0.02 0.86 5.32 84.66 0.45 1.32 16 7 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 8 Si 0.95 42.60 22.79 68.60 1.56 44.16 16 9 H -0.28 -12.41 7.10 99.48 0.71 -11.70 16 10 H -0.32 -14.69 7.11 99.48 0.71 -13.98 16 11 H -0.20 -7.56 4.65 99.48 0.46 -7.10 16 12 C 0.18 7.24 4.49 86.38 0.39 7.63 16 13 N -0.73 -22.61 5.01 -478.53 -2.40 -25.01 16 14 C 0.70 22.76 8.57 179.05 1.53 24.29 16 15 O -0.64 -27.79 16.34 -3.98 -0.07 -27.85 16 16 N -0.73 -16.10 5.56 -478.53 -2.66 -18.76 16 17 C 0.14 2.86 4.68 86.38 0.40 3.26 16 18 C -0.08 -1.05 5.51 30.59 0.17 -0.88 16 19 C -0.14 -1.77 2.47 -52.18 -0.13 -1.90 16 20 C -0.13 -1.82 9.49 71.98 0.68 -1.14 16 21 C -0.18 -2.14 9.82 30.60 0.30 -1.84 16 22 C -0.17 -1.74 9.97 30.60 0.31 -1.43 16 23 H 0.07 1.93 7.13 -2.39 -0.02 1.91 16 24 H 0.05 1.82 4.30 -2.39 -0.01 1.81 16 25 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 26 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.04 1.36 2.25 -2.38 -0.01 1.36 16 28 H 0.07 2.10 6.86 -2.39 -0.02 2.09 16 29 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.41 9.77 6.27 -92.71 -0.58 9.19 16 33 H 0.41 5.95 8.49 -92.70 -0.79 5.16 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.33 6.45 -2.39 -0.02 1.32 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.90 7.90 -2.39 -0.02 0.88 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.81 7.90 -2.39 -0.02 0.79 16 40 H 0.06 1.01 5.59 -2.39 -0.01 0.99 16 41 H 0.10 1.09 8.05 -2.39 -0.02 1.07 16 42 H 0.09 1.10 8.05 -2.39 -0.02 1.08 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.17 335.80 1.51 -71.66 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.61 Total: 22.53 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.38 Total: -7.79 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.76 Total: -102.70 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.07 Total: -27.85 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.56 Total: 44.16 kcal Total: -73.17 1.51 -71.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458755817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.850 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds