Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34784 * 119.99556 * 2 1 4 4 O 1.21586 * 119.99694 * 180.02562 * 3 2 1 5 5 N 1.34773 * 120.00214 * 0.02562 * 3 2 1 6 6 C 1.46500 * 119.99996 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47007 * 180.02562 * 6 5 3 8 8 C 1.53006 * 109.47127 * 60.00219 * 7 6 5 9 9 C 1.52997 * 109.47232 * 300.00097 * 7 6 5 10 10 C 1.50699 * 109.47078 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00019 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99908 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00364 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99946 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46997 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47438 * 119.99776 * 14 12 10 17 17 H 1.48494 * 109.47197 * 239.99736 * 14 12 10 18 18 C 1.46491 * 120.00266 * 180.02562 * 2 1 3 19 19 H 1.09007 * 115.55044 * 205.71534 * 18 2 1 20 20 C 1.52998 * 117.49928 * 351.38925 * 18 2 1 21 21 C 1.52998 * 60.00081 * 107.49389 * 20 18 2 22 22 C 1.53007 * 117.49324 * 252.51431 * 21 20 18 23 23 C 1.52998 * 117.49984 * 107.49524 * 21 20 18 24 24 H 1.08996 * 109.47835 * 90.00048 * 1 2 3 25 25 H 1.09003 * 109.47124 * 209.99692 * 1 2 3 26 26 H 1.09004 * 109.47214 * 329.99698 * 1 2 3 27 27 H 0.96998 * 119.99906 * 0.02562 * 5 3 2 28 28 H 1.09002 * 109.47092 * 60.00078 * 6 5 3 29 29 H 1.08996 * 109.47197 * 299.99794 * 6 5 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 31 31 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 32 32 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47140 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.47230 * 299.99295 * 9 7 6 35 35 H 1.09001 * 109.47375 * 60.00133 * 9 7 6 36 36 H 0.96999 * 120.00396 * 180.02562 * 13 12 10 37 37 H 1.09007 * 117.49935 * 214.97970 * 20 18 2 38 38 H 1.08992 * 117.49854 * 359.97438 * 20 18 2 39 39 H 1.09000 * 109.46989 * 128.62666 * 22 21 20 40 40 H 1.09006 * 109.46675 * 248.62251 * 22 21 20 41 41 H 1.08997 * 109.47131 * 8.61824 * 22 21 20 42 42 H 1.08992 * 109.47080 * 351.37157 * 23 21 20 43 43 H 1.09002 * 109.47145 * 111.38061 * 23 21 20 44 44 H 1.09003 * 109.46803 * 231.37187 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3546 1.1673 -0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1973 3.6032 0.0000 7 6 1.2030 4.7661 0.0014 8 6 0.3249 4.6847 1.2517 9 6 0.3220 4.6852 -1.2468 10 6 1.9565 6.0712 0.0014 11 1 3.0364 6.0712 0.0001 12 6 1.2670 7.2652 0.0031 13 7 -0.0481 7.2652 0.0042 14 14 2.2009 8.8830 0.0025 15 1 3.6610 8.6117 0.0006 16 1 1.8403 9.6624 -1.2091 17 1 1.8440 9.6611 1.2159 18 6 2.1975 -1.2686 -0.0006 19 1 3.1999 -1.2329 0.4262 20 6 1.3887 -2.5515 0.2020 21 6 1.9634 -2.2191 -1.1764 22 6 0.9819 -1.7718 -2.2617 23 6 3.1542 -3.0470 -1.6637 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 0.4949 2.3344 0.0013 28 1 2.8233 3.6610 -0.8905 29 1 2.8246 3.6610 0.8894 30 1 -0.2201 3.7407 1.2521 31 1 0.9526 4.7423 2.1409 32 1 -0.3832 5.5134 1.2529 33 1 -0.3861 5.5140 -1.2460 34 1 0.9475 4.7433 -2.1376 35 1 -0.2230 3.7413 -1.2464 36 1 -0.5332 8.1052 0.0050 37 1 1.8591 -3.3599 0.7618 38 1 0.3117 -2.4515 0.3362 39 1 1.3336 -0.8420 -2.7087 40 1 0.9147 -2.5418 -3.0304 41 1 -0.0015 -1.6133 -1.8193 42 1 3.5151 -3.6774 -0.8512 43 1 2.8433 -3.6738 -2.4995 44 1 3.9525 -2.3793 -1.9877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459241770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = -5.217582 kcal Electronic energy + Delta-G solvation = -21520.460007 eV Core-core repulsion = 18473.937259 eV Total energy + Delta-G solvation = -3046.522747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19815 -38.28152 -36.27491 -34.28603 -33.00038 -30.71821 -29.15765 -27.80282 -26.73849 -25.71198 -25.58402 -24.82314 -21.99636 -19.89214 -19.00148 -18.73382 -17.86958 -16.27357 -15.75718 -15.58691 -14.79786 -14.46258 -14.37004 -13.82651 -13.71220 -13.35745 -13.03880 -12.90881 -12.66057 -12.59484 -12.29861 -12.12140 -12.07763 -11.70151 -11.38817 -11.18945 -11.17224 -10.88134 -10.64580 -10.60954 -10.36224 -10.18806 -9.95415 -9.70902 -9.61481 -9.28391 -8.76652 -8.51338 -8.36872 -8.01073 -6.00816 -4.10459 2.87225 3.28415 3.37008 3.42189 3.42906 3.84774 4.35001 4.47811 4.57185 4.69706 4.72423 4.97471 5.03867 5.26128 5.33760 5.48652 5.53126 5.56933 5.69917 5.79229 5.80983 5.85147 5.89708 6.06790 6.21142 6.21509 6.39049 6.51906 6.64459 6.82739 6.83688 6.94787 7.04891 7.12151 7.28079 7.40825 7.57322 7.71433 8.02554 8.13908 8.39054 8.45164 8.89643 9.05468 9.55281 11.00705 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039706 B = 0.003946 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.021849 B = 7094.521096 C = 7292.645615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.703 3.297 4 O -0.595 6.595 5 N -0.732 5.732 6 C 0.149 3.851 7 C 0.055 3.945 8 C -0.129 4.129 9 C -0.129 4.129 10 C -0.504 4.504 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.886 5.886 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.116 3.884 19 H 0.131 0.869 20 C -0.185 4.185 21 C -0.145 4.145 22 C -0.113 4.113 23 C -0.112 4.112 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.394 0.606 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.004 0.996 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.004 0.996 36 H 0.259 0.741 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 -17.739 -1.248 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.404 3.596 4 O -0.474 6.474 5 N -0.387 5.387 6 C 0.026 3.974 7 C 0.054 3.946 8 C -0.187 4.187 9 C -0.187 4.187 10 C -0.542 4.542 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C 0.010 3.990 19 H 0.148 0.852 20 C -0.223 4.223 21 C -0.147 4.147 22 C -0.170 4.170 23 C -0.169 4.169 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.230 0.770 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.500 -17.517 -1.238 17.624 hybrid contribution -0.164 0.862 0.029 0.878 sum -1.664 -16.655 -1.209 16.781 Atomic orbital electron populations 1.21904 0.80415 1.03058 1.01841 1.46346 1.05565 1.03943 1.78580 1.15916 0.85341 0.80234 0.78079 1.90869 1.11686 1.86283 1.58529 1.45651 1.10086 1.05005 1.77985 1.21596 0.95016 0.80410 1.00363 1.18373 0.91969 0.91406 0.92803 1.21815 1.00236 0.98985 0.97629 1.21810 1.00227 0.99003 0.97615 1.21028 0.92951 0.89684 1.50564 0.92336 1.24878 0.94872 0.98958 0.94827 1.69812 1.05775 1.26137 1.50799 0.86517 0.80262 0.83628 0.77493 1.19734 1.21080 1.21090 1.21537 0.96898 0.79369 1.01175 0.85190 1.23700 1.00412 0.98709 0.99452 1.22090 0.99446 1.02797 0.90416 1.21377 0.97506 1.01097 0.96985 1.21317 0.96107 0.98636 1.00861 0.92427 0.90769 0.91162 0.76972 0.92941 0.92955 0.97717 0.95437 0.89619 0.89644 0.95447 0.97667 0.93101 0.88101 0.88278 0.92165 0.92539 0.92258 0.92486 0.92290 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.54 59.84 0.51 1.29 16 2 N -0.61 -8.80 2.88 -179.68 -0.52 -9.32 16 3 C 0.70 13.27 8.28 -86.91 -0.72 12.55 16 4 O -0.60 -13.44 16.05 5.29 0.08 -13.36 16 5 N -0.73 -13.76 4.82 -65.23 -0.31 -14.07 16 6 C 0.15 3.28 4.50 -4.04 -0.02 3.27 16 7 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 8 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 9 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 10 C -0.50 -13.30 8.01 -34.44 -0.28 -13.58 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 13 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 14 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 C 0.12 1.49 5.92 -67.94 -0.40 1.09 16 19 H 0.13 1.86 7.67 -51.92 -0.40 1.46 16 20 C -0.18 -1.73 9.10 -26.73 -0.24 -1.97 16 21 C -0.15 -1.54 2.70 -154.51 -0.42 -1.96 16 22 C -0.11 -1.15 8.59 37.16 0.32 -0.84 16 23 C -0.11 -1.05 9.85 37.16 0.37 -0.68 16 24 H 0.06 0.59 6.40 -51.93 -0.33 0.25 16 25 H 0.07 0.65 5.81 -51.93 -0.30 0.34 16 26 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 27 H 0.39 6.68 3.89 -40.82 -0.16 6.52 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 33 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 36 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.10 0.81 8.05 -51.92 -0.42 0.39 16 38 H 0.10 0.83 5.93 -51.93 -0.31 0.52 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 41 H 0.06 0.55 5.64 -51.93 -0.29 0.26 16 42 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 43 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -29.31 335.54 -7.84 -37.15 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.19 Total: 5.09 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.45 Total: -3.23 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.31 Total: -46.51 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.31 -7.84 -37.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459241770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.933 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds