Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34784 * 119.99556 * 2 1 4 4 O 1.21586 * 119.99694 * 180.02562 * 3 2 1 5 5 N 1.34773 * 120.00214 * 0.02562 * 3 2 1 6 6 C 1.46500 * 119.99996 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47007 * 180.02562 * 6 5 3 8 8 C 1.53006 * 109.47127 * 60.00219 * 7 6 5 9 9 C 1.52997 * 109.47232 * 300.00097 * 7 6 5 10 10 C 1.50699 * 109.47078 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00019 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99908 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00364 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99946 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46997 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47438 * 119.99776 * 14 12 10 17 17 H 1.48494 * 109.47197 * 239.99736 * 14 12 10 18 18 C 1.46491 * 120.00266 * 180.02562 * 2 1 3 19 19 H 1.09007 * 115.55044 * 205.71534 * 18 2 1 20 20 C 1.52998 * 117.49928 * 351.38925 * 18 2 1 21 21 C 1.52998 * 60.00081 * 107.49389 * 20 18 2 22 22 C 1.53007 * 117.49324 * 252.51431 * 21 20 18 23 23 C 1.52998 * 117.49984 * 107.49524 * 21 20 18 24 24 H 1.08996 * 109.47835 * 90.00048 * 1 2 3 25 25 H 1.09003 * 109.47124 * 209.99692 * 1 2 3 26 26 H 1.09004 * 109.47214 * 329.99698 * 1 2 3 27 27 H 0.96998 * 119.99906 * 0.02562 * 5 3 2 28 28 H 1.09002 * 109.47092 * 60.00078 * 6 5 3 29 29 H 1.08996 * 109.47197 * 299.99794 * 6 5 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 31 31 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 32 32 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47140 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.47230 * 299.99295 * 9 7 6 35 35 H 1.09001 * 109.47375 * 60.00133 * 9 7 6 36 36 H 0.96999 * 120.00396 * 180.02562 * 13 12 10 37 37 H 1.09007 * 117.49935 * 214.97970 * 20 18 2 38 38 H 1.08992 * 117.49854 * 359.97438 * 20 18 2 39 39 H 1.09000 * 109.46989 * 128.62666 * 22 21 20 40 40 H 1.09006 * 109.46675 * 248.62251 * 22 21 20 41 41 H 1.08997 * 109.47131 * 8.61824 * 22 21 20 42 42 H 1.08992 * 109.47080 * 351.37157 * 23 21 20 43 43 H 1.09002 * 109.47145 * 111.38061 * 23 21 20 44 44 H 1.09003 * 109.46803 * 231.37187 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3546 1.1673 -0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1973 3.6032 0.0000 7 6 1.2030 4.7661 0.0014 8 6 0.3249 4.6847 1.2517 9 6 0.3220 4.6852 -1.2468 10 6 1.9565 6.0712 0.0014 11 1 3.0364 6.0712 0.0001 12 6 1.2670 7.2652 0.0031 13 7 -0.0481 7.2652 0.0042 14 14 2.2009 8.8830 0.0025 15 1 3.6610 8.6117 0.0006 16 1 1.8403 9.6624 -1.2091 17 1 1.8440 9.6611 1.2159 18 6 2.1975 -1.2686 -0.0006 19 1 3.1999 -1.2329 0.4262 20 6 1.3887 -2.5515 0.2020 21 6 1.9634 -2.2191 -1.1764 22 6 0.9819 -1.7718 -2.2617 23 6 3.1542 -3.0470 -1.6637 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 0.4949 2.3344 0.0013 28 1 2.8233 3.6610 -0.8905 29 1 2.8246 3.6610 0.8894 30 1 -0.2201 3.7407 1.2521 31 1 0.9526 4.7423 2.1409 32 1 -0.3832 5.5134 1.2529 33 1 -0.3861 5.5140 -1.2460 34 1 0.9475 4.7433 -2.1376 35 1 -0.2230 3.7413 -1.2464 36 1 -0.5332 8.1052 0.0050 37 1 1.8591 -3.3599 0.7618 38 1 0.3117 -2.4515 0.3362 39 1 1.3336 -0.8420 -2.7087 40 1 0.9147 -2.5418 -3.0304 41 1 -0.0015 -1.6133 -1.8193 42 1 3.5151 -3.6774 -0.8512 43 1 2.8433 -3.6738 -2.4995 44 1 3.9525 -2.3793 -1.9877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459241770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = -21.571139 kcal Electronic energy + Delta-G solvation = -21521.169150 eV Core-core repulsion = 18473.937259 eV Total energy + Delta-G solvation = -3047.231891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46537 -39.47728 -38.02769 -35.59463 -34.66132 -32.53160 -30.01970 -28.67316 -27.66488 -27.57214 -27.45545 -26.62322 -23.17355 -21.03872 -20.64342 -19.94643 -19.22015 -17.84575 -17.36800 -16.83247 -16.63243 -15.81307 -15.56426 -15.16938 -14.80140 -14.72340 -14.58854 -14.20669 -14.01046 -13.75107 -13.49499 -13.21380 -13.13173 -13.09328 -12.95870 -12.70217 -12.56870 -12.44514 -12.25990 -12.13834 -11.96047 -11.55337 -11.48454 -11.34162 -11.12615 -10.80241 -10.70299 -10.40136 -10.04118 -9.18377 -8.02303 -6.17748 1.41798 1.45739 1.54988 1.64514 2.09665 2.46172 2.85915 3.09028 3.21349 3.67125 3.89669 3.90891 4.15090 4.21461 4.39074 4.50111 4.53061 4.67220 4.70532 4.74685 4.79337 4.92687 4.96139 4.99653 5.04479 5.05574 5.06444 5.07391 5.11365 5.18946 5.29495 5.37254 5.43638 5.57876 5.63274 5.66544 5.67853 5.98400 6.14381 6.21043 6.43723 6.86027 7.02299 7.49884 7.59177 8.97009 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039706 B = 0.003946 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.021849 B = 7094.521096 C = 7292.645615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.598 5.598 3 C 0.697 3.303 4 O -0.641 6.641 5 N -0.725 5.725 6 C 0.167 3.833 7 C 0.052 3.948 8 C -0.118 4.118 9 C -0.117 4.117 10 C -0.528 4.528 11 H 0.043 0.957 12 C 0.029 3.971 13 N -0.898 5.898 14 Si 0.946 3.054 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.075 3.925 19 H 0.105 0.895 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.112 4.112 23 C -0.112 4.112 24 H 0.070 0.930 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.404 0.596 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -19.708 -1.232 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.333 5.333 3 C 0.398 3.602 4 O -0.523 6.523 5 N -0.382 5.382 6 C 0.042 3.958 7 C 0.051 3.949 8 C -0.176 4.176 9 C -0.175 4.175 10 C -0.567 4.567 11 H 0.062 0.938 12 C -0.170 4.170 13 N -0.537 5.537 14 Si 0.773 3.227 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.030 4.030 19 H 0.123 0.877 20 C -0.187 4.187 21 C -0.147 4.147 22 C -0.169 4.169 23 C -0.170 4.170 24 H 0.089 0.911 25 H 0.123 0.877 26 H 0.088 0.912 27 H 0.243 0.757 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.203 -19.531 -1.223 19.830 hybrid contribution 0.351 1.395 0.015 1.438 sum -2.853 -18.137 -1.208 18.400 Atomic orbital electron populations 1.22196 0.77934 1.04613 1.03161 1.46316 1.07021 1.02965 1.76992 1.16107 0.84915 0.81246 0.77910 1.90831 1.13876 1.87096 1.60526 1.45341 1.10318 1.04134 1.78357 1.21138 0.94461 0.81615 0.98561 1.18370 0.92214 0.90744 0.93592 1.21645 0.99521 0.99694 0.96692 1.21641 0.99510 0.99686 0.96691 1.21282 0.92603 0.91535 1.51276 0.93842 1.25436 0.95660 1.01319 0.94622 1.69903 1.06387 1.26730 1.50695 0.85698 0.78946 0.80531 0.77573 1.20129 1.20637 1.20635 1.21656 0.96997 0.79901 1.04432 0.87721 1.23807 1.01028 0.96101 0.97775 1.22205 0.99994 1.01597 0.90856 1.21389 0.97859 1.00362 0.97288 1.21345 0.95240 0.98474 1.01913 0.91141 0.87727 0.91190 0.75693 0.94865 0.94790 0.94688 0.96381 0.91703 0.91722 0.96438 0.94682 0.92983 0.86241 0.86395 0.94736 0.90925 0.90877 0.91245 0.90704 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 8.54 127.77 1.09 2.27 16 2 N -0.60 -16.57 2.88 -840.63 -2.42 -18.99 16 3 C 0.70 26.43 8.28 179.05 1.48 27.92 16 4 O -0.64 -30.01 16.05 -3.99 -0.06 -30.07 16 5 N -0.72 -27.01 4.82 -478.54 -2.31 -29.32 16 6 C 0.17 7.50 4.50 86.38 0.39 7.89 16 7 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 8 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 9 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 10 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 11 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 12 C 0.03 1.56 5.15 84.66 0.44 2.00 16 13 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 14 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 C 0.08 1.85 5.92 44.99 0.27 2.11 16 19 H 0.10 3.08 7.67 -2.38 -0.02 3.06 16 20 C -0.15 -2.26 9.10 30.59 0.28 -1.98 16 21 C -0.14 -2.74 2.70 -52.18 -0.14 -2.88 16 22 C -0.11 -2.02 8.59 71.98 0.62 -1.40 16 23 C -0.11 -1.92 9.85 71.98 0.71 -1.21 16 24 H 0.07 1.19 6.40 -2.39 -0.02 1.17 16 25 H 0.10 1.35 5.81 -2.39 -0.01 1.33 16 26 H 0.07 1.35 6.36 -2.38 -0.02 1.33 16 27 H 0.40 13.04 3.89 -92.71 -0.36 12.68 16 28 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 33 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 36 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 37 H 0.12 1.41 8.05 -2.38 -0.02 1.40 16 38 H 0.12 1.37 5.93 -2.39 -0.01 1.35 16 39 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 1.07 7.92 -2.38 -0.02 1.05 16 41 H 0.07 1.09 5.64 -2.39 -0.01 1.07 16 42 H 0.07 0.99 7.90 -2.39 -0.02 0.97 16 43 H 0.07 1.03 7.92 -2.39 -0.02 1.02 16 44 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -64.90 335.54 4.53 -60.37 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.62 Total: 21.26 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.47 Total: -0.52 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -4.53 Total: -96.01 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.06 Total: -30.07 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.90 4.53 -60.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459241770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.803 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds