Wall clock time and date at job start Mon Mar 30 2020 01:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21582 * 120.00318 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99640 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00002 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47403 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47101 * 299.99781 * 7 6 5 9 9 C 1.53001 * 109.46852 * 60.00038 * 7 6 5 10 10 C 1.50699 * 109.47045 * 179.97438 * 7 6 5 11 11 H 1.07994 * 120.00341 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 7 6 13 13 N 1.31520 * 119.99940 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00084 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47196 * 59.99997 * 14 12 10 16 16 H 1.48500 * 109.47206 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47030 * 299.99612 * 14 12 10 18 18 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 19 19 H 1.09000 * 115.55102 * 154.42308 * 18 2 1 20 20 C 1.52999 * 117.49751 * 8.74843 * 18 2 1 21 21 C 1.53005 * 117.49583 * 300.08956 * 18 2 1 22 22 C 1.53001 * 117.49500 * 214.97912 * 21 18 2 23 23 C 1.52998 * 117.50192 * 359.97360 * 21 18 2 24 24 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 27 27 H 0.97001 * 120.00361 * 359.97438 * 5 3 2 28 28 H 1.09002 * 109.47093 * 299.99866 * 6 5 3 29 29 H 1.09006 * 109.47588 * 59.99611 * 6 5 3 30 30 H 1.09002 * 109.46947 * 60.00098 * 8 7 6 31 31 H 1.09002 * 109.47058 * 179.97438 * 8 7 6 32 32 H 1.08994 * 109.47177 * 299.99961 * 8 7 6 33 33 H 1.08995 * 109.47372 * 60.00416 * 9 7 6 34 34 H 1.09002 * 109.47140 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.47215 * 299.99913 * 9 7 6 36 36 H 0.96998 * 120.00002 * 179.97438 * 13 12 10 37 37 H 1.08994 * 117.50212 * 359.97438 * 20 18 2 38 38 H 1.08997 * 117.49806 * 145.02466 * 20 18 2 39 39 H 1.09004 * 109.47335 * 59.99999 * 22 21 18 40 40 H 1.09004 * 109.47319 * 180.02562 * 22 21 18 41 41 H 1.09004 * 109.47433 * 300.00110 * 22 21 18 42 42 H 1.08998 * 109.46778 * 60.00133 * 23 21 18 43 43 H 1.08994 * 109.47096 * 179.97438 * 23 21 18 44 44 H 1.09001 * 109.47099 * 300.00706 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0023 8 6 0.3242 4.6842 -1.2518 9 6 0.3232 4.6858 1.2467 10 6 1.9568 6.0711 -0.0022 11 1 3.0367 6.0711 -0.0018 12 6 1.2674 7.2652 -0.0026 13 7 -0.0478 7.2652 -0.0036 14 14 2.2014 8.8829 -0.0033 15 1 3.0551 8.9612 -1.2159 16 1 1.2364 10.0117 -0.0030 17 1 3.0551 8.9621 1.2092 18 6 2.1975 -1.2687 0.0006 19 1 3.2008 -1.2325 -0.4240 20 6 1.3891 -2.5513 -0.2053 21 6 1.9614 -2.2202 1.1753 22 6 3.1516 -3.0484 1.6637 23 6 0.9790 -1.7736 2.2598 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 0.4950 2.3344 -0.0013 28 1 2.8241 3.6612 0.8889 29 1 2.8243 3.6605 -0.8911 30 1 -0.2208 3.7402 -1.2513 31 1 -0.3844 5.5125 -1.2524 32 1 0.9512 4.7414 -2.1415 33 1 0.9495 4.7442 2.1369 34 1 -0.3854 5.5140 1.2457 35 1 -0.2218 3.7418 1.2472 36 1 -0.5328 8.1052 -0.0035 37 1 0.3122 -2.4512 -0.3407 38 1 1.8606 -3.3590 -0.7649 39 1 3.9495 -2.3810 1.9894 40 1 2.8393 -3.6764 2.4982 41 1 3.5138 -3.6783 0.8512 42 1 -0.0039 -1.6142 1.8163 43 1 0.9101 -2.5443 3.0274 44 1 1.3303 -0.8442 2.7079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459241773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:12 Heat of formation + Delta-G solvation = -5.110667 kcal Electronic energy + Delta-G solvation = -21519.974536 eV Core-core repulsion = 18473.456425 eV Total energy + Delta-G solvation = -3046.518111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19661 -38.27841 -36.27331 -34.28493 -32.99802 -30.71615 -29.15955 -27.80266 -26.73712 -25.71028 -25.58196 -24.81966 -21.99557 -19.89146 -19.00057 -18.73237 -17.86866 -16.27284 -15.75047 -15.58597 -14.80039 -14.46357 -14.36798 -13.82687 -13.71423 -13.35754 -13.03630 -12.90703 -12.65992 -12.59251 -12.29792 -12.12075 -12.07705 -11.70178 -11.37964 -11.17801 -11.16781 -10.84842 -10.71302 -10.61069 -10.35618 -10.18692 -9.95082 -9.70958 -9.61086 -9.28209 -8.78141 -8.51140 -8.35983 -8.01028 -6.00341 -4.10173 2.87238 3.31760 3.35740 3.39848 3.42846 3.84709 4.35053 4.47887 4.57227 4.69590 4.72506 4.97478 5.03869 5.26373 5.33781 5.48674 5.53115 5.56950 5.69944 5.79214 5.80970 5.85199 5.89759 6.06745 6.21131 6.21581 6.39136 6.51991 6.64485 6.82823 6.83775 6.94901 7.05064 7.12210 7.28157 7.40865 7.57534 7.71370 8.02691 8.13957 8.39178 8.45249 8.89379 9.05492 9.55400 11.01110 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039712 B = 0.003945 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.915388 B = 7095.235624 C = 7293.325057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.703 3.297 4 O -0.595 6.595 5 N -0.732 5.732 6 C 0.149 3.851 7 C 0.056 3.944 8 C -0.129 4.129 9 C -0.129 4.129 10 C -0.505 4.505 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.116 3.884 19 H 0.131 0.869 20 C -0.185 4.185 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.394 0.606 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.004 0.996 31 H 0.085 0.915 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.004 0.996 36 H 0.260 0.740 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -17.715 1.244 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.404 3.596 4 O -0.474 6.474 5 N -0.387 5.387 6 C 0.026 3.974 7 C 0.055 3.945 8 C -0.187 4.187 9 C -0.187 4.187 10 C -0.544 4.544 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.010 3.990 19 H 0.148 0.852 20 C -0.223 4.223 21 C -0.148 4.148 22 C -0.169 4.169 23 C -0.170 4.170 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.230 0.770 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.539 -17.488 1.233 17.599 hybrid contribution -0.136 0.853 -0.029 0.864 sum -1.675 -16.635 1.204 16.762 Atomic orbital electron populations 1.21907 0.80412 1.03058 1.01842 1.46350 1.05567 1.03944 1.78577 1.15913 0.85340 0.80234 0.78079 1.90868 1.11688 1.86282 1.58533 1.45651 1.10087 1.05005 1.77984 1.21599 0.95021 0.80418 1.00357 1.18360 0.91956 0.91364 0.92794 1.21813 1.00227 0.98979 0.97639 1.21812 1.00222 0.98998 0.97622 1.20950 0.92877 0.89716 1.50850 0.92448 1.24876 0.94875 0.98931 0.94798 1.69796 1.05770 1.26358 1.50614 0.86627 0.79570 0.82929 0.78694 1.20275 1.21358 1.20281 1.21541 0.96892 0.79362 1.01177 0.85188 1.23712 1.00422 0.98726 0.99413 1.22102 0.99454 1.02801 0.90404 1.21320 0.96112 0.98630 1.00861 1.21374 0.97500 1.01095 0.96994 0.92422 0.90768 0.91162 0.76970 0.92940 0.92962 0.97724 0.89627 0.95433 0.95444 0.89644 0.97683 0.92985 0.88277 0.88096 0.91952 0.92291 0.92491 0.92260 0.92537 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.54 59.85 0.51 1.29 16 2 N -0.61 -8.80 2.88 -179.66 -0.52 -9.32 16 3 C 0.70 13.28 8.28 -86.92 -0.72 12.56 16 4 O -0.60 -13.44 16.05 5.29 0.08 -13.36 16 5 N -0.73 -13.76 4.82 -65.22 -0.31 -14.08 16 6 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 7 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 8 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 9 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 10 C -0.51 -13.36 8.01 -34.44 -0.28 -13.63 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 12 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 13 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 14 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.12 1.49 5.92 -67.93 -0.40 1.09 16 19 H 0.13 1.86 7.67 -51.93 -0.40 1.46 16 20 C -0.18 -1.73 9.11 -26.69 -0.24 -1.97 16 21 C -0.15 -1.54 2.70 -154.47 -0.42 -1.96 16 22 C -0.11 -1.05 9.85 37.16 0.37 -0.68 16 23 C -0.11 -1.15 8.59 37.16 0.32 -0.84 16 24 H 0.06 0.59 6.40 -51.93 -0.33 0.25 16 25 H 0.07 0.65 5.80 -51.93 -0.30 0.35 16 26 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 27 H 0.39 6.69 3.89 -40.82 -0.16 6.53 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 31 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 35 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 36 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.10 0.83 5.93 -51.93 -0.31 0.52 16 38 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 41 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 42 H 0.06 0.55 5.64 -51.93 -0.29 0.26 16 43 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -29.28 335.54 -7.84 -37.11 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.19 Total: 5.16 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.45 Total: -3.24 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.31 Total: -46.54 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.28 -7.84 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459241773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.003 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds