Wall clock time and date at job start Mon Mar 30 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21582 * 120.00318 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99640 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00002 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47403 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47101 * 299.99781 * 7 6 5 9 9 C 1.53001 * 109.46852 * 60.00038 * 7 6 5 10 10 C 1.50699 * 109.47045 * 179.97438 * 7 6 5 11 11 H 1.07994 * 120.00341 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 7 6 13 13 N 1.31520 * 119.99940 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00084 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47196 * 59.99997 * 14 12 10 16 16 H 1.48500 * 109.47206 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47030 * 299.99612 * 14 12 10 18 18 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 19 19 H 1.09000 * 115.55102 * 154.42308 * 18 2 1 20 20 C 1.52999 * 117.49751 * 8.74843 * 18 2 1 21 21 C 1.53005 * 117.49583 * 300.08956 * 18 2 1 22 22 C 1.53001 * 117.49500 * 214.97912 * 21 18 2 23 23 C 1.52998 * 117.50192 * 359.97360 * 21 18 2 24 24 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 27 27 H 0.97001 * 120.00361 * 359.97438 * 5 3 2 28 28 H 1.09002 * 109.47093 * 299.99866 * 6 5 3 29 29 H 1.09006 * 109.47588 * 59.99611 * 6 5 3 30 30 H 1.09002 * 109.46947 * 60.00098 * 8 7 6 31 31 H 1.09002 * 109.47058 * 179.97438 * 8 7 6 32 32 H 1.08994 * 109.47177 * 299.99961 * 8 7 6 33 33 H 1.08995 * 109.47372 * 60.00416 * 9 7 6 34 34 H 1.09002 * 109.47140 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.47215 * 299.99913 * 9 7 6 36 36 H 0.96998 * 120.00002 * 179.97438 * 13 12 10 37 37 H 1.08994 * 117.50212 * 359.97438 * 20 18 2 38 38 H 1.08997 * 117.49806 * 145.02466 * 20 18 2 39 39 H 1.09004 * 109.47335 * 59.99999 * 22 21 18 40 40 H 1.09004 * 109.47319 * 180.02562 * 22 21 18 41 41 H 1.09004 * 109.47433 * 300.00110 * 22 21 18 42 42 H 1.08998 * 109.46778 * 60.00133 * 23 21 18 43 43 H 1.08994 * 109.47096 * 179.97438 * 23 21 18 44 44 H 1.09001 * 109.47099 * 300.00706 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0023 8 6 0.3242 4.6842 -1.2518 9 6 0.3232 4.6858 1.2467 10 6 1.9568 6.0711 -0.0022 11 1 3.0367 6.0711 -0.0018 12 6 1.2674 7.2652 -0.0026 13 7 -0.0478 7.2652 -0.0036 14 14 2.2014 8.8829 -0.0033 15 1 3.0551 8.9612 -1.2159 16 1 1.2364 10.0117 -0.0030 17 1 3.0551 8.9621 1.2092 18 6 2.1975 -1.2687 0.0006 19 1 3.2008 -1.2325 -0.4240 20 6 1.3891 -2.5513 -0.2053 21 6 1.9614 -2.2202 1.1753 22 6 3.1516 -3.0484 1.6637 23 6 0.9790 -1.7736 2.2598 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 0.4950 2.3344 -0.0013 28 1 2.8241 3.6612 0.8889 29 1 2.8243 3.6605 -0.8911 30 1 -0.2208 3.7402 -1.2513 31 1 -0.3844 5.5125 -1.2524 32 1 0.9512 4.7414 -2.1415 33 1 0.9495 4.7442 2.1369 34 1 -0.3854 5.5140 1.2457 35 1 -0.2218 3.7418 1.2472 36 1 -0.5328 8.1052 -0.0035 37 1 0.3122 -2.4512 -0.3407 38 1 1.8606 -3.3590 -0.7649 39 1 3.9495 -2.3810 1.9894 40 1 2.8393 -3.6764 2.4982 41 1 3.5138 -3.6783 0.8512 42 1 -0.0039 -1.6142 1.8163 43 1 0.9101 -2.5443 3.0274 44 1 1.3303 -0.8442 2.7079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459241773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:11 Heat of formation + Delta-G solvation = -21.429178 kcal Electronic energy + Delta-G solvation = -21520.682160 eV Core-core repulsion = 18473.456425 eV Total energy + Delta-G solvation = -3047.225735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46488 -39.47408 -38.02643 -35.59384 -34.65885 -32.53003 -30.02183 -28.67346 -27.66364 -27.57174 -27.45287 -26.62033 -23.17293 -21.03851 -20.64248 -19.94504 -19.22022 -17.83931 -17.36539 -16.83272 -16.63570 -15.81050 -15.56439 -15.17258 -14.80235 -14.71554 -14.58847 -14.20732 -14.01066 -13.75014 -13.49431 -13.20702 -13.12763 -13.07975 -12.95822 -12.68381 -12.61887 -12.44616 -12.25513 -12.13089 -11.96012 -11.55495 -11.48291 -11.34234 -11.12375 -10.79958 -10.71571 -10.39409 -10.04097 -9.18400 -8.01873 -6.17508 1.44990 1.45689 1.52251 1.64346 2.09648 2.46355 2.85793 3.08986 3.21669 3.67148 3.89482 3.90945 4.15050 4.21469 4.39094 4.50114 4.53071 4.67204 4.70535 4.74629 4.79358 4.92695 4.96141 4.99642 5.04448 5.05613 5.06420 5.07406 5.11367 5.18964 5.29466 5.37210 5.43614 5.57837 5.63216 5.66647 5.67613 5.98389 6.14416 6.21082 6.43735 6.85859 7.02279 7.49950 7.59148 8.97080 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039712 B = 0.003945 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.915388 B = 7095.235624 C = 7293.325057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.598 5.598 3 C 0.697 3.303 4 O -0.641 6.641 5 N -0.725 5.725 6 C 0.167 3.833 7 C 0.052 3.948 8 C -0.118 4.118 9 C -0.117 4.117 10 C -0.531 4.531 11 H 0.044 0.956 12 C 0.030 3.970 13 N -0.898 5.898 14 Si 0.945 3.055 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.278 1.278 18 C 0.075 3.925 19 H 0.105 0.895 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.112 4.112 24 H 0.070 0.930 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.404 0.596 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -19.689 1.225 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.333 5.333 3 C 0.398 3.602 4 O -0.523 6.523 5 N -0.382 5.382 6 C 0.042 3.958 7 C 0.051 3.949 8 C -0.175 4.175 9 C -0.175 4.175 10 C -0.569 4.569 11 H 0.062 0.938 12 C -0.170 4.170 13 N -0.537 5.537 14 Si 0.772 3.228 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.203 1.203 18 C -0.030 4.030 19 H 0.123 0.877 20 C -0.187 4.187 21 C -0.147 4.147 22 C -0.170 4.170 23 C -0.169 4.169 24 H 0.089 0.911 25 H 0.123 0.877 26 H 0.088 0.912 27 H 0.243 0.757 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.216 -19.509 1.215 19.809 hybrid contribution 0.373 1.385 -0.013 1.434 sum -2.844 -18.124 1.202 18.385 Atomic orbital electron populations 1.22198 0.77932 1.04612 1.03162 1.46319 1.07022 1.02967 1.76990 1.16104 0.84915 0.81245 0.77911 1.90830 1.13875 1.87094 1.60528 1.45343 1.10319 1.04136 1.78358 1.21140 0.94464 0.81618 0.98560 1.18359 0.92205 0.90719 0.93577 1.21643 0.99512 0.99695 0.96695 1.21642 0.99505 0.99686 0.96693 1.21230 0.92617 0.91557 1.51528 0.93812 1.25437 0.95664 1.01307 0.94589 1.69894 1.06389 1.26870 1.50531 0.85815 0.78579 0.79976 0.78420 1.20284 1.20675 1.20316 1.21661 0.96983 0.79892 1.04444 0.87720 1.23819 1.01037 0.96114 0.97742 1.22217 1.00000 1.01595 0.90848 1.21348 0.95249 0.98469 1.01910 1.21385 0.97852 1.00365 0.97296 0.91138 0.87726 0.91191 0.75694 0.94861 0.94787 0.94692 0.91702 0.96392 0.96456 0.91712 0.94700 0.92963 0.86395 0.86238 0.93857 0.90704 0.91252 0.90880 0.90922 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 8.54 127.77 1.09 2.27 16 2 N -0.60 -16.57 2.88 -840.60 -2.42 -19.00 16 3 C 0.70 26.44 8.28 179.05 1.48 27.92 16 4 O -0.64 -30.00 16.05 -3.97 -0.06 -30.07 16 5 N -0.72 -27.02 4.82 -478.53 -2.31 -29.33 16 6 C 0.17 7.50 4.50 86.38 0.39 7.89 16 7 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 8 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 9 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 10 C -0.53 -28.56 8.01 25.60 0.21 -28.35 16 11 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 12 C 0.03 1.59 5.15 84.65 0.44 2.02 16 13 N -0.90 -47.94 9.35 21.45 0.20 -47.74 16 14 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 C 0.08 1.85 5.92 44.99 0.27 2.11 16 19 H 0.10 3.08 7.67 -2.39 -0.02 3.06 16 20 C -0.15 -2.26 9.11 30.62 0.28 -1.98 16 21 C -0.14 -2.74 2.70 -52.15 -0.14 -2.88 16 22 C -0.11 -1.92 9.85 71.98 0.71 -1.21 16 23 C -0.11 -2.01 8.59 71.98 0.62 -1.40 16 24 H 0.07 1.19 6.40 -2.39 -0.02 1.17 16 25 H 0.10 1.35 5.80 -2.39 -0.01 1.34 16 26 H 0.07 1.35 6.36 -2.38 -0.02 1.33 16 27 H 0.40 13.05 3.89 -92.71 -0.36 12.69 16 28 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 31 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 35 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 36 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 37 H 0.12 1.37 5.93 -2.39 -0.01 1.35 16 38 H 0.12 1.42 8.05 -2.39 -0.02 1.40 16 39 H 0.04 0.89 8.14 -2.38 -0.02 0.88 16 40 H 0.07 1.03 7.92 -2.39 -0.02 1.02 16 41 H 0.07 0.99 7.90 -2.38 -0.02 0.97 16 42 H 0.07 1.09 5.64 -2.39 -0.01 1.07 16 43 H 0.07 1.07 7.92 -2.39 -0.02 1.05 16 44 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -64.81 335.54 4.52 -60.29 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.62 Total: 21.50 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.47 Total: -0.59 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -4.53 Total: -96.07 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.06 Total: -30.07 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.81 4.52 -60.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459241773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.859 kcal (2) G-P(sol) polarization free energy of solvation -64.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds