Wall clock time and date at job start Mon Mar 30 2020 01:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46498 * 120.00031 * 2 1 4 4 C 1.50705 * 109.47122 * 269.99709 * 3 2 1 5 5 H 1.08005 * 119.99736 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99996 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00073 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47247 * 89.99905 * 8 6 4 10 10 H 1.48494 * 109.47005 * 210.00308 * 8 6 4 11 11 H 1.48508 * 109.46860 * 330.00063 * 8 6 4 12 12 C 1.34779 * 119.99904 * 179.97438 * 2 1 3 13 13 O 1.21287 * 120.00077 * 179.97438 * 12 2 1 14 14 C 1.50695 * 119.99973 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.47153 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.47378 * 179.97438 * 15 14 12 17 17 C 1.46905 * 110.99920 * 66.04348 * 16 15 14 18 18 C 1.46896 * 111.00077 * 189.99879 * 16 15 14 19 19 H 1.08996 * 115.55167 * 312.27781 * 18 16 15 20 20 C 1.53007 * 117.49738 * 166.60714 * 18 16 15 21 21 C 1.53005 * 59.99972 * 252.51311 * 20 18 16 22 22 C 1.53002 * 117.49645 * 252.51444 * 21 20 18 23 23 C 1.52993 * 117.50344 * 107.49186 * 21 20 18 24 24 H 1.09003 * 109.47216 * 270.00178 * 1 2 3 25 25 H 1.09003 * 109.47724 * 30.00104 * 1 2 3 26 26 H 1.09001 * 109.47663 * 149.99956 * 1 2 3 27 27 H 1.08992 * 109.47292 * 29.99983 * 3 2 1 28 28 H 1.09005 * 109.47182 * 150.00024 * 3 2 1 29 29 H 0.96997 * 119.99779 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47513 * 60.00007 * 14 12 2 31 31 H 1.09000 * 109.47266 * 299.99773 * 14 12 2 32 32 H 1.09001 * 109.47398 * 59.99487 * 15 14 12 33 33 H 1.09009 * 109.47187 * 299.99892 * 15 14 12 34 34 H 1.08998 * 109.46694 * 177.66408 * 17 16 15 35 35 H 1.08996 * 109.47021 * 57.67060 * 17 16 15 36 36 H 1.08995 * 109.46836 * 297.66275 * 17 16 15 37 37 H 1.09000 * 117.49786 * 359.97438 * 20 18 16 38 38 H 1.08997 * 117.49498 * 145.00098 * 20 18 16 39 39 H 1.09001 * 109.47368 * 128.61979 * 22 21 20 40 40 H 1.08999 * 109.46966 * 248.61721 * 22 21 20 41 41 H 1.08997 * 109.47660 * 8.62003 * 22 21 20 42 42 H 1.09000 * 109.46725 * 355.00469 * 23 21 20 43 43 H 1.08995 * 109.47405 * 115.00691 * 23 21 20 44 44 H 1.09001 * 109.47496 * 235.01297 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2418 6 6 3.1260 2.8779 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4367 3.4174 -3.4340 9 1 2.3064 4.2600 -3.9004 10 1 4.6968 4.2006 -3.4967 11 1 3.5541 2.2203 -4.3050 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 0.8991 -5.0853 -1.2519 18 6 2.5515 -6.0386 0.2393 19 1 3.4618 -6.0458 -0.3602 20 6 1.9204 -7.3897 0.5818 21 6 2.6401 -6.5846 1.6658 22 6 4.0001 -7.0991 2.1420 23 6 1.7779 -5.9108 2.7351 24 1 -0.3634 0.0000 1.0277 25 1 -0.3635 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0294 4.4443 -0.8505 30 1 0.7590 -2.5303 -0.8897 31 1 0.7583 -2.5298 0.8903 32 1 3.0062 -3.5775 0.8905 33 1 3.0062 -3.5775 -0.8895 34 1 0.3980 -6.0532 -1.2421 35 1 1.5889 -5.0419 -2.0946 36 1 0.1570 -4.2929 -1.3485 37 1 0.8326 -7.4391 0.6309 38 1 2.4156 -8.2857 0.2077 39 1 4.7303 -6.2911 2.0970 40 1 3.9147 -7.4548 3.1688 41 1 4.3242 -7.9178 1.4996 42 1 0.7243 -6.0499 2.4929 43 1 1.9894 -6.3570 3.7067 44 1 2.0057 -4.8453 2.7672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489476103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:03 Heat of formation + Delta-G solvation = -35.025206 kcal Electronic energy + Delta-G solvation = -20911.165780 eV Core-core repulsion = 17863.350477 eV Total energy + Delta-G solvation = -3047.815303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80158 -39.87601 -36.80423 -36.37547 -34.74331 -32.13700 -29.92293 -29.28502 -28.31052 -27.52856 -27.09819 -25.13976 -23.07630 -21.60696 -20.04613 -19.66523 -18.71683 -17.97260 -17.16130 -17.00493 -16.46363 -16.24923 -15.60053 -15.49969 -15.04008 -14.57384 -14.40084 -14.19536 -13.84222 -13.76551 -13.54317 -13.45172 -13.37057 -13.21129 -12.98052 -12.84160 -12.75934 -12.55986 -12.51991 -12.39002 -12.21682 -11.99607 -11.84895 -11.70478 -10.88817 -10.65677 -10.59602 -10.50453 -9.42481 -9.33710 -8.23822 -6.39159 1.34928 1.38226 1.48465 1.83614 2.26140 2.40364 2.77194 2.90139 3.05418 3.80004 3.87343 3.91568 4.01309 4.09948 4.20511 4.28212 4.40241 4.44966 4.60671 4.64559 4.72105 4.76077 4.82890 4.89855 4.93550 4.94084 4.97834 5.02425 5.05055 5.09063 5.14107 5.16634 5.17488 5.22326 5.36140 5.54971 5.56798 5.83583 6.00167 6.04824 6.15530 6.68204 6.78761 7.26732 7.48002 8.83307 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029223 B = 0.003621 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.925859 B = 7730.040083 C = 7736.243659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.494 3.506 13 O -0.603 6.603 14 C -0.113 4.113 15 C 0.087 3.913 16 N -0.506 5.506 17 C 0.021 3.979 18 C -0.011 4.011 19 H 0.072 0.928 20 C -0.139 4.139 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.098 4.098 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.024 0.976 28 H -0.004 1.004 29 H 0.268 0.732 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.016 0.984 34 H 0.084 0.916 35 H 0.017 0.983 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -21.749 2.795 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.283 3.717 13 O -0.485 6.485 14 C -0.153 4.153 15 C -0.041 4.041 16 N -0.230 5.230 17 C -0.127 4.127 18 C -0.120 4.120 19 H 0.089 0.911 20 C -0.176 4.176 21 C -0.119 4.119 22 C -0.174 4.174 23 C -0.155 4.155 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.042 0.958 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.103 0.897 35 H 0.035 0.965 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.814 -21.545 3.223 23.500 hybrid contribution 1.288 0.985 -1.469 2.188 sum -7.526 -20.559 1.754 21.964 Atomic orbital electron populations 1.21940 0.77718 1.04030 1.02651 1.48200 1.08516 1.06352 1.71157 1.18748 0.91062 0.80514 0.96012 1.21712 1.36944 1.06591 0.93031 0.92898 1.25893 0.94848 0.96414 1.02127 1.70056 1.38937 1.14766 1.33095 0.85389 0.78159 0.78190 0.78903 1.18610 1.20577 1.19842 1.21386 0.87784 0.86766 0.75796 1.90633 1.16835 1.88294 1.52709 1.21533 0.98780 0.88740 1.06235 1.21538 0.94219 0.88161 1.00210 1.61744 1.25962 1.00002 1.35265 1.22496 0.97832 1.03650 0.88722 1.22565 0.97085 0.92375 0.99974 0.91064 1.23366 1.00662 0.92730 1.00881 1.21803 0.98024 1.01992 0.90103 1.21402 0.93645 1.00365 1.01981 1.21118 0.98812 0.99200 0.96387 0.91089 0.91603 0.88662 0.95835 0.98618 0.92360 0.87079 0.86221 0.92088 0.96550 0.89719 0.96477 0.90120 0.87650 0.87435 0.93482 0.90905 0.91616 0.91915 0.91950 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.61 -26.56 2.86 -851.14 -2.43 -28.99 16 3 C 0.26 14.34 5.16 85.64 0.44 14.78 16 4 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 8 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 C 0.49 21.10 7.67 87.66 0.67 21.78 16 13 O -0.60 -32.40 15.56 -3.05 -0.05 -32.45 16 14 C -0.11 -3.24 4.17 29.85 0.12 -3.12 16 15 C 0.09 2.59 4.25 86.30 0.37 2.96 16 16 N -0.51 -11.50 4.25 -897.02 -3.81 -15.32 16 17 C 0.02 0.39 9.25 127.69 1.18 1.57 16 18 C -0.01 -0.24 4.70 44.92 0.21 -0.03 16 19 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 20 C -0.14 -2.18 9.18 30.60 0.28 -1.89 16 21 C -0.12 -2.21 2.70 -52.18 -0.14 -2.35 16 22 C -0.12 -1.94 9.85 71.98 0.71 -1.24 16 23 C -0.10 -1.85 9.33 71.98 0.67 -1.18 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 26 H 0.09 2.12 6.44 -2.39 -0.02 2.11 16 27 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 28 H 0.00 -0.28 7.42 -2.38 -0.02 -0.29 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 30 H 0.11 2.66 5.86 -2.39 -0.01 2.65 16 31 H 0.12 2.85 8.11 -2.39 -0.02 2.83 16 32 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 33 H 0.02 0.56 8.06 -2.38 -0.02 0.54 16 34 H 0.08 1.28 7.60 -2.39 -0.02 1.26 16 35 H 0.02 0.35 8.12 -2.39 -0.02 0.33 16 36 H 0.08 1.36 6.58 -2.39 -0.02 1.34 16 37 H 0.11 1.52 7.97 -2.39 -0.02 1.50 16 38 H 0.11 1.36 8.05 -2.39 -0.02 1.34 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.04 7.89 -2.39 -0.02 1.02 16 41 H 0.06 0.93 7.90 -2.39 -0.02 0.92 16 42 H 0.06 1.12 7.88 -2.39 -0.02 1.10 16 43 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 44 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -74.62 356.80 3.49 -71.13 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.94 Total: 11.04 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.53 Total: 3.89 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -5.96 Total: -101.17 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.05 Total: -32.45 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -74.62 3.49 -71.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489476103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.107 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds