Wall clock time and date at job start Mon Mar 30 2020 00:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46631 * 2 1 4 4 N 1.33246 * 125.52308 * 270.00494 * 3 2 1 5 5 C 1.30836 * 109.82251 * 180.02562 * 4 3 2 6 6 N 1.34423 * 108.08273 * 359.97438 * 5 4 3 7 7 C 1.46502 * 126.82558 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47053 * 124.98514 * 7 6 5 9 9 H 1.09005 * 109.46895 * 304.99812 * 8 7 6 10 10 O 1.42894 * 109.47467 * 64.99869 * 8 7 6 11 11 C 1.52995 * 109.47109 * 185.00141 * 8 7 6 12 12 N 1.46904 * 109.47435 * 178.50723 * 11 8 7 13 13 C 1.46896 * 111.00238 * 164.00834 * 12 11 8 14 14 C 1.46906 * 110.99806 * 287.96224 * 12 11 8 15 15 C 1.50699 * 109.46575 * 169.99660 * 14 12 11 16 16 H 1.08000 * 120.00675 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99693 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00240 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99851 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47338 * 90.00164 * 19 17 15 21 21 H 1.48502 * 109.47266 * 210.00094 * 19 17 15 22 22 H 1.48496 * 109.47176 * 329.99954 * 19 17 15 23 23 N 1.30706 * 125.52924 * 90.00229 * 3 2 1 24 24 H 1.08998 * 109.47574 * 60.00164 * 1 2 3 25 25 H 1.08999 * 109.46707 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46766 * 299.99041 * 1 2 3 27 27 H 1.09000 * 109.46766 * 240.00959 * 2 1 3 28 28 H 1.08998 * 109.47574 * 119.99836 * 2 1 3 29 29 H 1.08004 * 125.95551 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.46666 * 244.98193 * 7 6 5 31 31 H 1.08997 * 109.47292 * 4.98339 * 7 6 5 32 32 H 0.96700 * 113.99847 * 60.00111 * 10 8 7 33 33 H 1.09004 * 109.47341 * 298.50764 * 11 8 7 34 34 H 1.09006 * 109.47529 * 58.50486 * 11 8 7 35 35 H 1.09004 * 109.47353 * 65.48788 * 13 12 11 36 36 H 1.09000 * 109.47222 * 185.48422 * 13 12 11 37 37 H 1.09005 * 109.47414 * 305.48952 * 13 12 11 38 38 H 1.08999 * 109.47317 * 289.99847 * 14 12 11 39 39 H 1.09001 * 109.46975 * 50.00081 * 14 12 11 40 40 H 0.96999 * 120.00213 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2902 2.1509 -1.0845 5 6 2.7105 3.3382 -0.7304 6 7 2.7290 3.3909 0.6127 7 6 3.1317 4.5300 1.4413 8 6 2.0016 4.8794 2.4117 9 1 1.0825 5.0526 1.8518 10 8 1.8065 3.7979 3.3250 11 6 2.3705 6.1439 3.1900 12 7 1.2702 6.4997 4.0961 13 6 1.7171 7.4578 5.1161 14 6 0.1209 7.0257 3.3475 15 6 -1.0653 7.1477 4.2689 16 1 -0.9745 6.8635 5.3068 17 6 -2.2667 7.6223 3.7868 18 7 -3.3019 7.7293 4.5909 19 14 -2.4242 8.1132 1.9913 20 1 -2.8522 6.9371 1.1922 21 1 -3.4337 9.1944 1.8605 22 1 -1.1118 8.5986 1.4940 23 7 2.2854 2.1370 1.0637 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8935 -0.5138 0.8900 29 1 2.9925 4.1370 -1.4004 30 1 4.0275 4.2704 2.0052 31 1 3.3404 5.3882 0.8025 32 1 2.5855 3.5878 3.8580 33 1 3.2750 5.9624 3.7706 34 1 2.5452 6.9625 2.4917 35 1 1.9850 8.3997 4.6373 36 1 0.9122 7.6295 5.8307 37 1 2.5858 7.0551 5.6371 38 1 0.3691 8.0068 2.9427 39 1 -0.1221 6.3464 2.5304 40 1 -4.1472 8.0628 4.2517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519064203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:13 Heat of formation + Delta-G solvation = 44.536187 kcal Electronic energy + Delta-G solvation = -20723.591646 eV Core-core repulsion = 17575.686040 eV Total energy + Delta-G solvation = -3147.905606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.05371 -38.24951 -35.84452 -34.58967 -32.77522 -32.45865 -30.91597 -29.70411 -28.06922 -26.56376 -24.29401 -23.51050 -22.27668 -21.64821 -20.23529 -20.02909 -17.38482 -16.79564 -16.38729 -15.68359 -15.46243 -15.10999 -14.70797 -14.56740 -14.18131 -14.01459 -13.72864 -13.34158 -12.98826 -12.70536 -12.41038 -12.27572 -11.88092 -11.67017 -11.61440 -11.41940 -11.15814 -11.13764 -10.97981 -10.56608 -10.32600 -10.09187 -9.94013 -9.89064 -9.64729 -9.34489 -9.21446 -8.58529 -7.43969 -6.06739 -4.03823 1.67210 2.28143 2.93364 3.25307 3.31508 3.32762 4.04797 4.14712 4.38988 4.47482 4.66290 4.73743 4.86832 4.99958 5.18656 5.22130 5.26908 5.27243 5.38575 5.42340 5.45222 5.72838 5.79270 5.92926 6.00377 6.11081 6.15527 6.18744 6.31607 6.50576 6.58725 6.76768 6.79401 6.89669 7.53878 7.79566 7.94951 8.02167 8.14613 8.62683 9.02366 9.54493 11.06574 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.005015 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.057292 B = 5581.815107 C = 6282.558851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.025 4.025 3 C 0.208 3.792 4 N -0.546 5.546 5 C 0.244 3.756 6 N -0.372 5.372 7 C 0.094 3.906 8 C 0.105 3.895 9 H 0.103 0.897 10 O -0.518 6.518 11 C 0.024 3.976 12 N -0.520 5.520 13 C 0.040 3.960 14 C 0.162 3.838 15 C -0.507 4.507 16 H 0.081 0.919 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.872 3.128 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.270 1.270 23 N -0.281 5.281 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.215 0.785 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.364 0.636 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.012 0.988 36 H 0.081 0.919 37 H 0.047 0.953 38 H -0.013 1.013 39 H 0.022 0.978 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.619 -8.299 -9.363 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.074 4.074 4 N -0.274 5.274 5 C -0.053 4.053 6 N -0.163 5.163 7 C -0.029 4.029 8 C 0.044 3.956 9 H 0.121 0.879 10 O -0.321 6.321 11 C -0.106 4.106 12 N -0.244 5.244 13 C -0.109 4.109 14 C 0.036 3.964 15 C -0.545 4.545 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.700 3.300 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.195 1.195 23 N -0.109 5.109 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.231 0.769 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.209 0.791 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.004 0.996 39 H 0.040 0.960 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.571 -8.943 -8.919 19.283 hybrid contribution 0.732 1.660 -1.322 2.245 sum 15.303 -7.283 -10.240 19.801 Atomic orbital electron populations 1.21718 0.93770 1.02147 1.02857 1.19822 0.96467 0.86614 1.03571 1.24332 0.99003 0.98266 0.85843 1.70355 1.22307 1.03356 1.31342 1.25995 0.97731 0.97166 0.84407 1.50405 1.48633 1.11430 1.05801 1.22702 0.99629 0.85396 0.95174 1.22155 0.97091 0.87141 0.89244 0.87928 1.86806 1.40071 1.51108 1.54077 1.22699 0.95656 0.96160 0.96086 1.61828 1.05116 1.43272 1.14145 1.22236 1.00143 0.92648 0.95844 1.20229 0.89572 0.92243 0.94332 1.20997 0.92999 1.42479 0.98074 0.90062 1.24889 0.95727 0.95391 0.97248 1.69884 1.01807 1.46868 1.35231 0.86912 0.78065 0.78723 0.86340 1.20139 1.21056 1.19460 1.78232 1.20295 0.90555 1.21800 0.92329 0.91696 0.92007 0.89570 0.89747 0.76884 0.89058 0.87514 0.79097 0.91218 0.94876 0.96983 0.90074 0.93428 0.99557 0.96019 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.02 -0.28 6.56 -27.88 -0.18 -0.46 16 3 C 0.21 3.02 7.39 -156.85 -1.16 1.86 16 4 N -0.55 -7.81 11.19 -11.97 -0.13 -7.94 16 5 C 0.24 2.88 12.63 -90.66 -1.14 1.74 16 6 N -0.37 -4.84 3.69 -62.63 -0.23 -5.07 16 7 C 0.09 0.97 6.21 -4.04 -0.03 0.94 16 8 C 0.11 1.53 3.21 -26.73 -0.09 1.45 16 9 H 0.10 1.85 6.56 -51.93 -0.34 1.51 16 10 O -0.52 -8.62 12.33 -35.23 -0.43 -9.05 16 11 C 0.02 0.35 4.63 -3.82 -0.02 0.34 16 12 N -0.52 -10.46 4.60 -244.36 -1.12 -11.58 16 13 C 0.04 0.72 9.32 60.06 0.56 1.28 16 14 C 0.16 3.90 3.64 -4.97 -0.02 3.88 16 15 C -0.51 -14.55 9.09 -34.44 -0.31 -14.86 16 16 H 0.08 2.54 7.34 -52.49 -0.39 2.16 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 19 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 N -0.28 -4.38 11.75 32.42 0.38 -4.00 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.21 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.11 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.36 4.63 9.05 45.56 0.41 5.04 16 33 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 34 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 35 H 0.01 0.21 8.13 -51.93 -0.42 -0.22 16 36 H 0.08 1.68 6.90 -51.93 -0.36 1.32 16 37 H 0.05 0.72 7.97 -51.93 -0.41 0.30 16 38 H -0.01 -0.32 7.17 -51.93 -0.37 -0.69 16 39 H 0.02 0.53 5.81 -51.93 -0.30 0.23 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -35.95 331.95 -8.11 -44.06 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.55 Total: 1.80 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.12 Total: -3.17 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.34 Total: -55.62 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.43 Total: -9.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.95 -8.11 -44.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519064203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.594 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds