Wall clock time and date at job start Mon Mar 30 2020 00:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46631 * 2 1 4 4 N 1.33246 * 125.52308 * 270.00494 * 3 2 1 5 5 C 1.30836 * 109.82251 * 180.02562 * 4 3 2 6 6 N 1.34423 * 108.08273 * 359.97438 * 5 4 3 7 7 C 1.46502 * 126.82558 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47053 * 124.98514 * 7 6 5 9 9 H 1.09005 * 109.46895 * 304.99812 * 8 7 6 10 10 O 1.42894 * 109.47467 * 64.99869 * 8 7 6 11 11 C 1.52995 * 109.47109 * 185.00141 * 8 7 6 12 12 N 1.46904 * 109.47435 * 178.50723 * 11 8 7 13 13 C 1.46896 * 111.00238 * 164.00834 * 12 11 8 14 14 C 1.46906 * 110.99806 * 287.96224 * 12 11 8 15 15 C 1.50699 * 109.46575 * 169.99660 * 14 12 11 16 16 H 1.08000 * 120.00675 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99693 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00240 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99851 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47338 * 90.00164 * 19 17 15 21 21 H 1.48502 * 109.47266 * 210.00094 * 19 17 15 22 22 H 1.48496 * 109.47176 * 329.99954 * 19 17 15 23 23 N 1.30706 * 125.52924 * 90.00229 * 3 2 1 24 24 H 1.08998 * 109.47574 * 60.00164 * 1 2 3 25 25 H 1.08999 * 109.46707 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46766 * 299.99041 * 1 2 3 27 27 H 1.09000 * 109.46766 * 240.00959 * 2 1 3 28 28 H 1.08998 * 109.47574 * 119.99836 * 2 1 3 29 29 H 1.08004 * 125.95551 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.46666 * 244.98193 * 7 6 5 31 31 H 1.08997 * 109.47292 * 4.98339 * 7 6 5 32 32 H 0.96700 * 113.99847 * 60.00111 * 10 8 7 33 33 H 1.09004 * 109.47341 * 298.50764 * 11 8 7 34 34 H 1.09006 * 109.47529 * 58.50486 * 11 8 7 35 35 H 1.09004 * 109.47353 * 65.48788 * 13 12 11 36 36 H 1.09000 * 109.47222 * 185.48422 * 13 12 11 37 37 H 1.09005 * 109.47414 * 305.48952 * 13 12 11 38 38 H 1.08999 * 109.47317 * 289.99847 * 14 12 11 39 39 H 1.09001 * 109.46975 * 50.00081 * 14 12 11 40 40 H 0.96999 * 120.00213 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2902 2.1509 -1.0845 5 6 2.7105 3.3382 -0.7304 6 7 2.7290 3.3909 0.6127 7 6 3.1317 4.5300 1.4413 8 6 2.0016 4.8794 2.4117 9 1 1.0825 5.0526 1.8518 10 8 1.8065 3.7979 3.3250 11 6 2.3705 6.1439 3.1900 12 7 1.2702 6.4997 4.0961 13 6 1.7171 7.4578 5.1161 14 6 0.1209 7.0257 3.3475 15 6 -1.0653 7.1477 4.2689 16 1 -0.9745 6.8635 5.3068 17 6 -2.2667 7.6223 3.7868 18 7 -3.3019 7.7293 4.5909 19 14 -2.4242 8.1132 1.9913 20 1 -2.8522 6.9371 1.1922 21 1 -3.4337 9.1944 1.8605 22 1 -1.1118 8.5986 1.4940 23 7 2.2854 2.1370 1.0637 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8935 -0.5138 0.8900 29 1 2.9925 4.1370 -1.4004 30 1 4.0275 4.2704 2.0052 31 1 3.3404 5.3882 0.8025 32 1 2.5855 3.5878 3.8580 33 1 3.2750 5.9624 3.7706 34 1 2.5452 6.9625 2.4917 35 1 1.9850 8.3997 4.6373 36 1 0.9122 7.6295 5.8307 37 1 2.5858 7.0551 5.6371 38 1 0.3691 8.0068 2.9427 39 1 -0.1221 6.3464 2.5304 40 1 -4.1472 8.0628 4.2517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519064203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:12 Heat of formation + Delta-G solvation = 16.440994 kcal Electronic energy + Delta-G solvation = -20724.809945 eV Core-core repulsion = 17575.686040 eV Total energy + Delta-G solvation = -3149.123905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.99388 -39.50474 -37.26417 -35.56179 -34.62686 -33.70649 -31.92974 -30.92079 -29.92460 -27.68963 -25.61750 -24.80780 -23.51160 -22.62713 -21.68170 -21.11866 -19.13313 -18.20442 -17.43080 -16.86156 -16.63120 -16.34977 -16.05104 -15.91026 -15.58902 -15.14904 -14.82148 -14.61552 -14.55052 -14.32015 -13.66164 -13.34171 -13.17285 -13.07290 -12.79151 -12.60322 -12.50642 -12.43612 -12.31846 -12.02897 -11.91465 -11.76562 -11.53022 -11.11184 -10.90812 -10.81482 -10.66462 -10.25474 -8.96526 -8.31740 -6.34623 0.74528 1.28142 1.30462 1.39792 1.44711 1.96723 2.29420 2.98863 3.03266 3.30946 3.51897 3.64136 3.81588 3.91050 4.08359 4.19529 4.26908 4.37364 4.39486 4.48233 4.55534 4.59576 4.62453 4.68919 4.87463 4.94115 4.97425 5.03754 5.12718 5.20272 5.25939 5.38675 5.52281 5.54766 5.93911 5.98488 6.35919 6.63992 6.72190 7.01834 7.19050 7.28483 8.85364 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.005015 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.057292 B = 5581.815107 C = 6282.558851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.195 3.805 4 N -0.575 5.575 5 C 0.250 3.750 6 N -0.379 5.379 7 C 0.101 3.899 8 C 0.107 3.893 9 H 0.061 0.939 10 O -0.551 6.551 11 C 0.027 3.973 12 N -0.546 5.546 13 C 0.044 3.956 14 C 0.176 3.824 15 C -0.516 4.516 16 H 0.035 0.965 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.945 3.055 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.244 1.244 23 N -0.322 5.322 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.261 0.739 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.378 0.622 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.040 0.960 37 H 0.084 0.916 38 H -0.009 1.009 39 H 0.018 0.982 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.302 -7.792 -11.738 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.087 4.087 4 N -0.304 5.304 5 C -0.046 4.046 6 N -0.169 5.169 7 C -0.021 4.021 8 C 0.046 3.954 9 H 0.079 0.921 10 O -0.356 6.356 11 C -0.102 4.102 12 N -0.270 5.270 13 C -0.104 4.104 14 C 0.049 3.951 15 C -0.555 4.555 16 H 0.053 0.947 17 C -0.191 4.191 18 N -0.590 5.590 19 Si 0.768 3.232 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.167 1.167 23 N -0.151 5.151 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.277 0.723 30 H 0.135 0.865 31 H 0.166 0.834 32 H 0.226 0.774 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.009 0.991 39 H 0.036 0.964 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.301 -8.431 -11.278 22.307 hybrid contribution -0.071 1.469 -0.469 1.543 sum 17.230 -6.963 -11.748 21.986 Atomic orbital electron populations 1.21661 0.93896 1.03266 1.00998 1.19951 0.96245 0.85644 1.04696 1.24859 0.98735 0.99298 0.85854 1.70361 1.23624 1.04649 1.31752 1.26914 0.95737 0.97414 0.84520 1.50544 1.48659 1.11171 1.06554 1.22818 0.98192 0.85982 0.95106 1.22039 0.97057 0.86773 0.89504 0.92070 1.86758 1.41788 1.51999 1.55085 1.22805 0.94745 0.96516 0.96114 1.61647 1.06364 1.43518 1.15446 1.22179 0.99934 0.93288 0.95030 1.19908 0.89578 0.92379 0.93278 1.21307 0.95336 1.41822 0.97006 0.94714 1.25872 0.95217 0.95440 1.02621 1.70052 1.02624 1.48452 1.37852 0.85757 0.79299 0.78445 0.79704 1.19944 1.20353 1.16702 1.78146 1.21774 0.92087 1.23045 0.93277 0.89104 0.94590 0.87944 0.89030 0.72322 0.86511 0.83403 0.77409 0.87532 0.92766 0.95929 0.94082 0.89695 0.99100 0.96368 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.89 71.98 0.71 -2.36 16 2 C -0.03 -0.56 6.56 29.85 0.20 -0.37 16 3 C 0.19 5.53 7.39 138.63 1.03 6.56 16 4 N -0.58 -15.57 11.19 -191.80 -2.15 -17.71 16 5 C 0.25 5.18 12.63 180.36 2.28 7.46 16 6 N -0.38 -8.91 3.69 -352.06 -1.30 -10.21 16 7 C 0.10 1.68 6.21 86.38 0.54 2.21 16 8 C 0.11 2.90 3.21 30.59 0.10 3.00 16 9 H 0.06 2.17 6.56 -2.38 -0.02 2.15 16 10 O -0.55 -17.93 12.33 -148.98 -1.84 -19.77 16 11 C 0.03 0.70 4.63 86.30 0.40 1.10 16 12 N -0.55 -21.31 4.60 -927.02 -4.27 -25.57 16 13 C 0.04 1.54 9.32 127.69 1.19 2.73 16 14 C 0.18 8.35 3.64 85.56 0.31 8.66 16 15 C -0.52 -30.60 9.09 25.60 0.23 -30.37 16 16 H 0.03 2.31 7.34 -2.91 -0.02 2.29 16 17 C 0.01 0.33 5.47 84.66 0.46 0.79 16 18 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 19 Si 0.94 44.75 27.47 68.60 1.88 46.64 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.24 -10.43 6.54 99.48 0.65 -9.77 16 23 N -0.32 -9.79 11.75 -51.33 -0.60 -10.40 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.26 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.15 1.24 8.09 -2.39 -0.02 1.22 16 32 H 0.38 9.12 9.05 -74.06 -0.67 8.45 16 33 H 0.11 2.00 7.88 -2.39 -0.02 1.98 16 34 H 0.05 1.22 8.05 -2.38 -0.02 1.21 16 35 H 0.02 0.73 8.13 -2.38 -0.02 0.72 16 36 H 0.04 1.75 6.90 -2.39 -0.02 1.73 16 37 H 0.08 2.32 7.97 -2.38 -0.02 2.31 16 38 H -0.01 -0.39 7.17 -2.39 -0.02 -0.41 16 39 H 0.02 0.89 5.81 -2.39 -0.01 0.87 16 40 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -83.34 331.95 -0.22 -83.57 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.30 Total: 14.53 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 7.44 Total: -0.58 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -8.02 Total: -124.39 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.84 Total: -19.77 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -83.34 -0.22 -83.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519064203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.006 kcal (2) G-P(sol) polarization free energy of solvation -83.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds