Wall clock time and date at job start Mon Mar 30 2020 00:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47515 * 2 1 4 4 N 1.33248 * 125.52643 * 269.95409 * 3 2 1 5 5 C 1.30825 * 109.83074 * 179.80172 * 4 3 2 6 6 N 1.34433 * 108.07720 * 0.37993 * 5 4 3 7 7 C 1.46494 * 126.82614 * 179.89071 * 6 5 4 8 8 C 1.53003 * 109.47179 * 124.71269 * 7 6 5 9 9 H 1.08995 * 109.46781 * 55.00194 * 8 7 6 10 10 O 1.42903 * 109.47025 * 295.00379 * 8 7 6 11 11 C 1.53000 * 109.47326 * 175.00413 * 8 7 6 12 12 N 1.46897 * 109.47280 * 180.45918 * 11 8 7 13 13 C 1.46894 * 111.00199 * 199.84598 * 12 11 8 14 14 C 1.46905 * 110.99697 * 75.89677 * 12 11 8 15 15 C 1.50706 * 109.46916 * 190.00182 * 14 12 11 16 16 H 1.08001 * 119.99914 * 359.97438 * 15 14 12 17 17 C 1.37872 * 119.99916 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00228 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99970 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47449 * 60.00040 * 19 17 15 21 21 H 1.48501 * 109.47294 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47199 * 299.99972 * 19 17 15 23 23 N 1.30707 * 125.52956 * 90.00128 * 3 2 1 24 24 H 1.09002 * 109.46671 * 59.99860 * 1 2 3 25 25 H 1.08996 * 109.47707 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46728 * 300.00556 * 1 2 3 27 27 H 1.08999 * 109.47036 * 239.99620 * 2 1 3 28 28 H 1.09002 * 109.46671 * 120.00139 * 2 1 3 29 29 H 1.07996 * 125.96239 * 180.24245 * 5 4 3 30 30 H 1.09008 * 109.46904 * 4.71838 * 7 6 5 31 31 H 1.08998 * 109.47749 * 244.71626 * 7 6 5 32 32 H 0.96696 * 113.99635 * 299.99531 * 10 8 7 33 33 H 1.08998 * 109.46841 * 300.45941 * 11 8 7 34 34 H 1.09004 * 109.47246 * 60.45792 * 11 8 7 35 35 H 1.09000 * 109.46957 * 64.82234 * 13 12 11 36 36 H 1.08998 * 109.47626 * 184.82206 * 13 12 11 37 37 H 1.08996 * 109.47649 * 304.82731 * 13 12 11 38 38 H 1.09002 * 109.47041 * 309.99808 * 14 12 11 39 39 H 1.08994 * 109.47437 * 70.00137 * 14 12 11 40 40 H 0.96999 * 120.00545 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2914 2.1504 -1.0844 5 6 2.7070 3.3393 -0.7305 6 7 2.7299 3.3905 0.6126 7 6 3.1323 4.5296 1.4412 8 6 2.0020 4.8793 2.4112 9 1 1.7327 3.9952 2.9891 10 8 0.8643 5.3312 1.6739 11 6 2.4677 5.9860 3.3595 12 7 1.3862 6.3141 4.2979 13 6 1.5909 7.6408 4.8942 14 6 1.2604 5.2835 5.3372 15 6 -0.0003 5.5193 6.1286 16 1 -0.6435 6.3518 5.8841 17 6 -0.3325 4.6724 7.1645 18 7 0.4505 3.6585 7.4619 19 14 -1.8947 4.9652 8.1458 20 1 -3.0687 4.9000 7.2388 21 1 -2.0220 3.9234 9.1964 22 1 -1.8353 6.3052 8.7830 23 7 2.2857 2.1368 1.0637 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.9854 4.1393 -1.4005 30 1 3.3412 5.3878 0.8023 31 1 4.0281 4.2701 2.0055 32 1 1.0314 6.1168 1.1355 33 1 3.3404 5.6443 3.9159 34 1 2.7293 6.8729 2.7822 35 1 1.5253 8.4024 4.1172 36 1 0.8243 7.8230 5.6473 37 1 2.5752 7.6816 5.3606 38 1 1.2174 4.2996 4.8700 39 1 2.1219 5.3321 6.0032 40 1 0.2170 3.0628 8.1910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519064204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:16 Heat of formation + Delta-G solvation = 38.212325 kcal Electronic energy + Delta-G solvation = -20628.088430 eV Core-core repulsion = 17479.908602 eV Total energy + Delta-G solvation = -3148.179829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99458 -38.16204 -35.74462 -34.54403 -32.76521 -32.47701 -30.81228 -29.66160 -27.36684 -26.47590 -24.29921 -23.57358 -22.25072 -21.64671 -20.23856 -20.03077 -17.25872 -16.43377 -16.15558 -15.91251 -15.22047 -15.03096 -14.66471 -14.52071 -14.32551 -13.72644 -13.67293 -13.47285 -12.84401 -12.51425 -12.36491 -11.98381 -11.69888 -11.56445 -11.53193 -11.24690 -11.08750 -10.97248 -10.88257 -10.67639 -10.40555 -10.19810 -9.88135 -9.77802 -9.59078 -9.29646 -9.12214 -8.42038 -7.28385 -6.01297 -4.02430 1.73765 2.34733 2.99298 3.34882 3.38937 3.42287 4.14556 4.23372 4.39997 4.49538 4.71540 4.80276 4.97377 5.18021 5.30297 5.32975 5.34053 5.35974 5.44964 5.49337 5.56131 5.85360 5.88288 6.04965 6.05766 6.23081 6.24467 6.31320 6.36895 6.56091 6.67569 6.87245 7.23776 7.27413 7.77106 7.93242 8.06283 8.16230 8.20106 8.52097 9.03967 9.61433 11.09762 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.004773 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.739390 B = 5865.437202 C = 6999.827567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C 0.216 3.784 4 N -0.547 5.547 5 C 0.249 3.751 6 N -0.366 5.366 7 C 0.095 3.905 8 C 0.105 3.895 9 H 0.117 0.883 10 O -0.533 6.533 11 C 0.027 3.973 12 N -0.530 5.530 13 C 0.038 3.962 14 C 0.192 3.808 15 C -0.507 4.507 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 N -0.300 5.300 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.214 0.786 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.360 0.640 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.009 0.991 38 H 0.031 0.969 39 H -0.011 1.011 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.005 0.679 -15.517 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 C -0.066 4.066 4 N -0.275 5.275 5 C -0.048 4.048 6 N -0.156 5.156 7 C -0.028 4.028 8 C 0.044 3.956 9 H 0.135 0.865 10 O -0.336 6.336 11 C -0.103 4.103 12 N -0.254 5.254 13 C -0.111 4.111 14 C 0.068 3.932 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.128 5.128 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.230 0.770 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.206 0.794 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.027 0.973 38 H 0.049 0.951 39 H 0.007 0.993 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.213 -0.266 -14.890 16.136 hybrid contribution 0.494 0.991 0.780 1.354 sum 6.707 0.724 -14.109 15.639 Atomic orbital electron populations 1.21710 0.93750 1.02145 1.02811 1.19841 0.96502 0.86627 1.03684 1.24241 0.98519 0.98172 0.85695 1.70341 1.22607 1.03308 1.31266 1.25896 0.97557 0.97068 0.84303 1.50323 1.48230 1.11144 1.05894 1.22688 1.00038 0.85203 0.94852 1.22270 0.84530 0.98667 0.90156 0.86486 1.86788 1.35469 1.48164 1.63133 1.22610 0.94176 0.97231 0.96253 1.62013 1.40285 1.03572 1.19552 1.22230 0.99571 0.90610 0.98661 1.19782 0.96320 0.89679 0.87465 1.21088 1.06914 1.12564 1.14004 0.91922 1.24979 0.97110 0.95097 0.97376 1.69943 1.37689 1.15976 1.30205 0.86557 0.83619 0.77686 0.79532 1.20119 1.21337 1.20311 1.78110 1.21115 0.91040 1.22523 0.92328 0.91690 0.92020 0.89497 0.89665 0.76952 0.88027 0.88522 0.79448 0.94522 0.91854 0.93699 0.90319 0.97286 0.95111 0.99296 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.03 -0.32 6.56 -27.89 -0.18 -0.51 16 3 C 0.22 3.32 7.39 -156.85 -1.16 2.16 16 4 N -0.55 -7.98 11.19 -11.98 -0.13 -8.11 16 5 C 0.25 2.97 12.63 -90.66 -1.14 1.83 16 6 N -0.37 -5.05 3.64 -62.63 -0.23 -5.28 16 7 C 0.10 1.07 6.19 -4.04 -0.03 1.05 16 8 C 0.10 1.64 3.17 -26.73 -0.08 1.56 16 9 H 0.12 2.42 6.74 -51.93 -0.35 2.07 16 10 O -0.53 -8.82 13.16 -35.23 -0.46 -9.28 16 11 C 0.03 0.44 4.66 -3.83 -0.02 0.42 16 12 N -0.53 -11.16 4.56 -244.37 -1.11 -12.27 16 13 C 0.04 0.71 9.37 60.06 0.56 1.27 16 14 C 0.19 5.04 4.55 -4.97 -0.02 5.01 16 15 C -0.51 -14.48 8.39 -34.44 -0.29 -14.77 16 16 H 0.06 1.77 7.17 -52.49 -0.38 1.40 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 19 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 N -0.30 -5.12 12.53 32.42 0.41 -4.71 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.10 0.70 8.09 -51.92 -0.42 0.28 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.36 4.16 9.04 45.56 0.41 4.57 16 33 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 34 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.63 6.66 -51.93 -0.35 1.28 16 37 H 0.01 0.16 8.13 -51.93 -0.42 -0.27 16 38 H 0.03 0.88 6.63 -51.93 -0.34 0.53 16 39 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -35.82 337.34 -8.44 -44.26 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.61 Total: 1.48 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.09 Total: -1.79 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.33 Total: -56.78 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.46 Total: -9.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.82 -8.44 -44.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519064204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.473 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds