Wall clock time and date at job start Mon Mar 30 2020 00:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47515 * 2 1 4 4 N 1.33248 * 125.52643 * 269.95409 * 3 2 1 5 5 C 1.30825 * 109.83074 * 179.80172 * 4 3 2 6 6 N 1.34433 * 108.07720 * 0.37993 * 5 4 3 7 7 C 1.46494 * 126.82614 * 179.89071 * 6 5 4 8 8 C 1.53003 * 109.47179 * 124.71269 * 7 6 5 9 9 H 1.08995 * 109.46781 * 55.00194 * 8 7 6 10 10 O 1.42903 * 109.47025 * 295.00379 * 8 7 6 11 11 C 1.53000 * 109.47326 * 175.00413 * 8 7 6 12 12 N 1.46897 * 109.47280 * 180.45918 * 11 8 7 13 13 C 1.46894 * 111.00199 * 199.84598 * 12 11 8 14 14 C 1.46905 * 110.99697 * 75.89677 * 12 11 8 15 15 C 1.50706 * 109.46916 * 190.00182 * 14 12 11 16 16 H 1.08001 * 119.99914 * 359.97438 * 15 14 12 17 17 C 1.37872 * 119.99916 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00228 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99970 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47449 * 60.00040 * 19 17 15 21 21 H 1.48501 * 109.47294 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47199 * 299.99972 * 19 17 15 23 23 N 1.30707 * 125.52956 * 90.00128 * 3 2 1 24 24 H 1.09002 * 109.46671 * 59.99860 * 1 2 3 25 25 H 1.08996 * 109.47707 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46728 * 300.00556 * 1 2 3 27 27 H 1.08999 * 109.47036 * 239.99620 * 2 1 3 28 28 H 1.09002 * 109.46671 * 120.00139 * 2 1 3 29 29 H 1.07996 * 125.96239 * 180.24245 * 5 4 3 30 30 H 1.09008 * 109.46904 * 4.71838 * 7 6 5 31 31 H 1.08998 * 109.47749 * 244.71626 * 7 6 5 32 32 H 0.96696 * 113.99635 * 299.99531 * 10 8 7 33 33 H 1.08998 * 109.46841 * 300.45941 * 11 8 7 34 34 H 1.09004 * 109.47246 * 60.45792 * 11 8 7 35 35 H 1.09000 * 109.46957 * 64.82234 * 13 12 11 36 36 H 1.08998 * 109.47626 * 184.82206 * 13 12 11 37 37 H 1.08996 * 109.47649 * 304.82731 * 13 12 11 38 38 H 1.09002 * 109.47041 * 309.99808 * 14 12 11 39 39 H 1.08994 * 109.47437 * 70.00137 * 14 12 11 40 40 H 0.96999 * 120.00545 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2914 2.1504 -1.0844 5 6 2.7070 3.3393 -0.7305 6 7 2.7299 3.3905 0.6126 7 6 3.1323 4.5296 1.4412 8 6 2.0020 4.8793 2.4112 9 1 1.7327 3.9952 2.9891 10 8 0.8643 5.3312 1.6739 11 6 2.4677 5.9860 3.3595 12 7 1.3862 6.3141 4.2979 13 6 1.5909 7.6408 4.8942 14 6 1.2604 5.2835 5.3372 15 6 -0.0003 5.5193 6.1286 16 1 -0.6435 6.3518 5.8841 17 6 -0.3325 4.6724 7.1645 18 7 0.4505 3.6585 7.4619 19 14 -1.8947 4.9652 8.1458 20 1 -3.0687 4.9000 7.2388 21 1 -2.0220 3.9234 9.1964 22 1 -1.8353 6.3052 8.7830 23 7 2.2857 2.1368 1.0637 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.9854 4.1393 -1.4005 30 1 3.3412 5.3878 0.8023 31 1 4.0281 4.2701 2.0055 32 1 1.0314 6.1168 1.1355 33 1 3.3404 5.6443 3.9159 34 1 2.7293 6.8729 2.7822 35 1 1.5253 8.4024 4.1172 36 1 0.8243 7.8230 5.6473 37 1 2.5752 7.6816 5.3606 38 1 1.2174 4.2996 4.8700 39 1 2.1219 5.3321 6.0032 40 1 0.2170 3.0628 8.1910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519064204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:15 Heat of formation + Delta-G solvation = 10.455714 kcal Electronic energy + Delta-G solvation = -20629.292047 eV Core-core repulsion = 17479.908602 eV Total energy + Delta-G solvation = -3149.383446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.01442 -39.50342 -37.28326 -35.58977 -34.64491 -33.75693 -31.90445 -30.91938 -29.36238 -27.69872 -25.80621 -24.94103 -23.53239 -22.70659 -21.82758 -21.11823 -18.71249 -18.20338 -17.25084 -17.18138 -16.62359 -16.32035 -16.17294 -15.84519 -15.42217 -15.32598 -14.97958 -14.62624 -14.31353 -13.98181 -13.63624 -13.35236 -13.17518 -12.94742 -12.70802 -12.62638 -12.56872 -12.49632 -12.37213 -12.25115 -12.04642 -11.66148 -11.42495 -11.24060 -10.92628 -10.69635 -10.63796 -10.27720 -8.97971 -8.23308 -6.33441 0.74064 1.36959 1.41253 1.42838 1.48877 1.96208 2.37620 3.06288 3.10531 3.29252 3.39130 3.66764 3.87032 3.95347 3.99628 4.20419 4.24724 4.37084 4.40673 4.50849 4.52673 4.59095 4.64922 4.76615 4.95412 4.99167 5.07697 5.12325 5.17512 5.23835 5.28028 5.35086 5.51819 5.61122 5.99620 6.04158 6.31382 6.61805 6.82679 6.99080 7.17142 7.36205 8.87786 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.004773 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.739390 B = 5865.437202 C = 6999.827567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C 0.207 3.793 4 N -0.573 5.573 5 C 0.263 3.737 6 N -0.375 5.375 7 C 0.103 3.897 8 C 0.114 3.886 9 H 0.052 0.948 10 O -0.559 6.559 11 C 0.028 3.972 12 N -0.544 5.544 13 C 0.039 3.961 14 C 0.211 3.789 15 C -0.525 4.525 16 H 0.062 0.938 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.262 1.262 23 N -0.360 5.360 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.031 0.969 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.269 0.731 30 H 0.163 0.837 31 H 0.102 0.898 32 H 0.384 0.616 33 H 0.033 0.967 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.015 0.985 38 H -0.006 1.006 39 H -0.040 1.040 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 2.699 -17.379 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.075 4.075 4 N -0.302 5.302 5 C -0.033 4.033 6 N -0.164 5.164 7 C -0.019 4.019 8 C 0.053 3.947 9 H 0.070 0.930 10 O -0.366 6.366 11 C -0.101 4.101 12 N -0.268 5.268 13 C -0.109 4.109 14 C 0.085 3.915 15 C -0.563 4.563 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.187 1.187 23 N -0.189 5.189 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.285 0.715 30 H 0.180 0.820 31 H 0.120 0.880 32 H 0.233 0.767 33 H 0.052 0.948 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.012 0.988 39 H -0.022 1.022 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.569 1.792 -16.768 18.098 hybrid contribution 0.421 0.418 1.274 1.406 sum 6.990 2.211 -15.494 17.141 Atomic orbital electron populations 1.21649 0.93558 1.03337 1.01102 1.19987 0.96589 0.85656 1.04643 1.24759 0.97930 0.99139 0.85701 1.70358 1.23933 1.04574 1.31287 1.26966 0.94907 0.97359 0.84048 1.50412 1.48525 1.10618 1.06866 1.22789 0.97690 0.86383 0.95056 1.21900 0.85778 0.96159 0.90846 0.92951 1.86733 1.36407 1.49762 1.63681 1.22748 0.92321 0.99488 0.95512 1.61883 1.43343 1.03140 1.18406 1.22252 0.98925 0.90196 0.99480 1.19333 0.94444 0.89879 0.87857 1.21461 1.07763 1.12547 1.14561 0.91982 1.25943 1.00645 0.94685 0.98567 1.70084 1.39719 1.16962 1.30889 0.85446 0.79040 0.78276 0.77939 1.19706 1.20728 1.18695 1.78041 1.23260 0.93135 1.24430 0.92621 0.89052 0.94943 0.87447 0.89682 0.71540 0.81983 0.88017 0.76706 0.94840 0.86634 0.89461 0.92972 0.96667 0.98755 1.02210 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.89 71.98 0.71 -2.57 16 2 C -0.03 -0.71 6.56 29.85 0.20 -0.52 16 3 C 0.21 6.44 7.39 138.63 1.03 7.46 16 4 N -0.57 -16.00 11.19 -191.81 -2.15 -18.15 16 5 C 0.26 5.56 12.63 180.36 2.28 7.84 16 6 N -0.37 -9.86 3.64 -352.07 -1.28 -11.14 16 7 C 0.10 2.07 6.19 86.38 0.53 2.60 16 8 C 0.11 3.55 3.17 30.60 0.10 3.65 16 9 H 0.05 2.34 6.74 -2.39 -0.02 2.32 16 10 O -0.56 -17.88 13.16 -148.98 -1.96 -19.84 16 11 C 0.03 0.86 4.66 86.30 0.40 1.27 16 12 N -0.54 -22.83 4.56 -927.06 -4.22 -27.06 16 13 C 0.04 1.42 9.37 127.69 1.20 2.62 16 14 C 0.21 11.60 4.55 85.56 0.39 11.99 16 15 C -0.53 -30.93 8.39 25.60 0.21 -30.71 16 16 H 0.06 3.58 7.17 -2.91 -0.02 3.55 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 18 N -0.94 -58.62 13.29 21.45 0.28 -58.34 16 19 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 N -0.36 -12.70 12.53 -51.34 -0.64 -13.35 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.27 2.13 8.06 -2.91 -0.02 2.10 16 30 H 0.16 1.28 8.09 -2.38 -0.02 1.26 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.38 7.58 9.04 -74.06 -0.67 6.91 16 33 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 34 H 0.12 2.33 7.94 -2.39 -0.02 2.31 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.05 2.13 6.66 -2.39 -0.02 2.12 16 37 H 0.01 0.51 8.13 -2.39 -0.02 0.49 16 38 H -0.01 -0.35 6.63 -2.39 -0.02 -0.36 16 39 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -84.56 337.34 -0.08 -84.64 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.36 Total: 11.27 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 7.51 Total: 4.05 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -8.01 Total: -128.03 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -1.96 Total: -19.84 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -84.56 -0.08 -84.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519064204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.101 kcal (2) G-P(sol) polarization free energy of solvation -84.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds