Wall clock time and date at job start Mon Mar 30 2020 01:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99683 * 2 1 4 4 H 1.48500 * 109.47452 * 240.00293 * 3 2 1 5 5 H 1.48498 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46915 * 120.00362 * 3 2 1 7 7 C 1.37878 * 120.00584 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99559 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.46908 * 111.00155 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47085 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46932 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99915 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00224 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47344 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46817 * 64.99877 * 17 16 14 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99683 * 17 16 14 23 23 H 0.96998 * 120.00420 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47274 * 59.99566 * 9 7 2 25 25 H 1.09002 * 109.47436 * 300.00060 * 9 7 2 26 26 H 1.00896 * 111.00365 * 303.95295 * 10 9 7 27 27 H 1.08999 * 109.46895 * 59.99915 * 11 10 9 28 28 H 1.08997 * 109.46787 * 299.99668 * 11 10 9 29 29 H 1.08995 * 109.46928 * 59.99971 * 12 11 10 30 30 H 1.08997 * 109.47011 * 300.00041 * 12 11 10 31 31 H 0.97002 * 119.99602 * 359.97438 * 13 12 11 32 32 H 1.09008 * 109.47224 * 59.99699 * 16 14 13 33 33 H 1.08997 * 109.47214 * 299.99692 * 16 14 13 34 34 H 1.09002 * 109.47070 * 305.00057 * 17 16 14 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6967 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 6 2.5305 -6.0429 -0.0019 13 7 1.8322 -7.3308 -0.0019 14 6 2.5370 -8.4795 -0.0019 15 8 3.7493 -8.4471 -0.0024 16 6 1.8187 -9.8043 -0.0026 17 6 2.8436 -10.9402 -0.0031 18 6 3.6379 -10.9111 1.3042 19 6 4.6624 -12.0474 1.3041 20 6 3.9366 -13.3884 1.1779 21 6 3.1424 -13.4176 -0.1294 22 6 2.1184 -12.2815 -0.1294 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8400 -3.5482 -0.7836 27 1 0.8797 -4.9813 -0.8905 28 1 0.8817 -4.9816 0.8895 29 1 3.1560 -5.9684 0.8876 30 1 3.1548 -5.9685 -0.8923 31 1 0.8625 -7.3566 -0.0012 32 1 1.1940 -9.8785 -0.8928 33 1 1.1935 -9.8790 0.8871 34 1 3.5247 -10.8147 -0.8449 35 1 4.1545 -9.9556 1.3943 36 1 2.9568 -11.0366 2.1460 37 1 5.2279 -12.0269 2.2356 38 1 5.3435 -11.9223 0.4623 39 1 3.2556 -13.5135 2.0197 40 1 4.6666 -14.1979 1.1774 41 1 2.6258 -14.3731 -0.2194 42 1 3.8236 -13.2925 -0.9711 43 1 1.4374 -12.4070 0.7123 44 1 1.5526 -12.3023 -1.0609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519141376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:59 Heat of formation + Delta-G solvation = -78.170707 kcal Electronic energy + Delta-G solvation = -19918.879198 eV Core-core repulsion = 16869.192966 eV Total energy + Delta-G solvation = -3049.686232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09555 -38.32402 -36.11549 -34.17664 -32.92667 -32.34888 -30.90734 -29.21703 -27.24224 -25.44285 -22.84077 -22.36405 -21.56249 -21.44583 -20.16638 -19.89061 -17.06198 -16.36516 -15.95085 -15.81548 -15.49438 -15.02821 -14.57391 -14.39241 -14.22838 -14.19676 -13.63812 -13.30708 -12.82624 -12.68090 -12.45541 -12.29415 -12.12864 -11.81879 -11.76131 -11.31901 -11.17657 -11.15331 -11.01149 -10.72391 -10.67745 -10.64766 -10.47107 -10.24406 -9.98985 -9.61577 -9.24284 -8.96818 -8.51391 -7.41705 -6.06758 -4.09037 2.66747 3.19272 3.32676 3.36241 3.39947 4.40539 4.41397 4.49698 4.49965 4.77756 4.88583 5.00206 5.12323 5.17717 5.26229 5.26891 5.29299 5.33439 5.38211 5.39808 5.46398 5.51385 5.60274 5.69094 5.82020 5.84823 5.91348 5.97360 5.99779 6.08335 6.21648 6.26416 6.31669 6.34529 6.54549 7.15593 7.33846 7.52476 7.73079 8.06451 8.26160 8.29452 8.52771 8.99580 9.56058 11.04323 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.061960 B = 0.002335 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.795938 B =11989.317829 C =12267.966057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.687 5.687 11 C 0.049 3.951 12 C 0.120 3.880 13 N -0.730 5.730 14 C 0.510 3.490 15 O -0.538 6.538 16 C -0.138 4.138 17 C -0.070 4.070 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.115 4.115 23 H 0.262 0.738 24 H -0.013 1.013 25 H 0.029 0.971 26 H 0.332 0.668 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -26.449 0.041 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.318 5.318 11 C -0.081 4.081 12 C -0.004 4.004 13 N -0.381 5.381 14 C 0.296 3.704 15 O -0.416 6.416 16 C -0.179 4.179 17 C -0.089 4.089 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.153 4.153 23 H 0.072 0.928 24 H 0.005 0.995 25 H 0.047 0.953 26 H 0.148 0.852 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.908 -26.262 0.732 26.432 hybrid contribution -0.586 0.975 -0.908 1.455 sum 2.322 -25.287 -0.175 25.394 Atomic orbital electron populations 1.69946 1.06103 1.27000 1.50726 1.24998 0.94913 0.99453 0.95236 0.86507 0.79394 0.82462 0.78723 1.20212 1.21330 1.20090 1.21140 0.93572 0.90155 1.50642 0.91881 1.19563 0.90491 0.87177 0.95871 1.60586 1.21322 1.00768 1.49144 1.22025 0.95252 0.90531 1.00313 1.21370 0.95301 0.81033 1.02650 1.46058 1.10391 1.06231 1.75461 1.20674 0.88104 0.85675 0.75947 1.90673 1.13998 1.87627 1.49257 1.21771 0.99507 0.92318 1.04258 1.20903 0.96053 0.92294 0.99651 1.21715 0.97872 0.99992 0.96231 1.21504 0.97984 0.94367 1.01671 1.21560 0.99033 0.97501 0.97695 1.21501 0.98005 0.98071 0.98032 1.21596 0.97774 0.94198 1.01698 0.92801 0.99480 0.95316 0.85194 0.95839 0.91248 0.90693 0.91863 0.76731 0.89016 0.88985 0.90411 0.89822 0.92764 0.92275 0.92017 0.92190 0.92389 0.92218 0.92014 0.91960 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.63 9.32 -34.44 -0.32 -14.95 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.20 5.08 5.44 -4.98 -0.03 5.05 16 10 N -0.69 -14.55 6.49 -115.06 -0.75 -15.29 16 11 C 0.05 0.82 5.80 -3.82 -0.02 0.80 16 12 C 0.12 1.77 5.94 -4.04 -0.02 1.74 16 13 N -0.73 -8.61 5.56 -60.30 -0.33 -8.95 16 14 C 0.51 6.27 7.55 -10.99 -0.08 6.19 16 15 O -0.54 -8.64 13.97 5.56 0.08 -8.56 16 16 C -0.14 -1.16 5.17 -27.88 -0.14 -1.31 16 17 C -0.07 -0.63 1.84 -90.62 -0.17 -0.79 16 18 C -0.12 -1.19 4.94 -26.73 -0.13 -1.32 16 19 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 20 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 21 C -0.12 -0.82 5.92 -26.76 -0.16 -0.98 16 22 C -0.12 -0.81 5.20 -26.76 -0.14 -0.95 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H -0.01 -0.34 8.14 -51.93 -0.42 -0.77 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.33 6.71 8.72 -39.29 -0.34 6.37 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.40 3.64 8.47 -40.82 -0.35 3.30 16 32 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.83 7.95 -51.93 -0.41 0.41 16 35 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -31.58 350.22 -9.79 -41.37 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.14 Total: 2.73 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.63 Total: -7.26 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.35 Total: -50.21 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.58 -9.79 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519141376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.803 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds