Wall clock time and date at job start Mon Mar 30 2020 01:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99683 * 2 1 4 4 H 1.48500 * 109.47452 * 240.00293 * 3 2 1 5 5 H 1.48498 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46915 * 120.00362 * 3 2 1 7 7 C 1.37878 * 120.00584 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99559 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.46908 * 111.00155 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47085 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46932 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99915 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00224 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47344 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46817 * 64.99877 * 17 16 14 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99683 * 17 16 14 23 23 H 0.96998 * 120.00420 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47274 * 59.99566 * 9 7 2 25 25 H 1.09002 * 109.47436 * 300.00060 * 9 7 2 26 26 H 1.00896 * 111.00365 * 303.95295 * 10 9 7 27 27 H 1.08999 * 109.46895 * 59.99915 * 11 10 9 28 28 H 1.08997 * 109.46787 * 299.99668 * 11 10 9 29 29 H 1.08995 * 109.46928 * 59.99971 * 12 11 10 30 30 H 1.08997 * 109.47011 * 300.00041 * 12 11 10 31 31 H 0.97002 * 119.99602 * 359.97438 * 13 12 11 32 32 H 1.09008 * 109.47224 * 59.99699 * 16 14 13 33 33 H 1.08997 * 109.47214 * 299.99692 * 16 14 13 34 34 H 1.09002 * 109.47070 * 305.00057 * 17 16 14 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6967 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 6 2.5305 -6.0429 -0.0019 13 7 1.8322 -7.3308 -0.0019 14 6 2.5370 -8.4795 -0.0019 15 8 3.7493 -8.4471 -0.0024 16 6 1.8187 -9.8043 -0.0026 17 6 2.8436 -10.9402 -0.0031 18 6 3.6379 -10.9111 1.3042 19 6 4.6624 -12.0474 1.3041 20 6 3.9366 -13.3884 1.1779 21 6 3.1424 -13.4176 -0.1294 22 6 2.1184 -12.2815 -0.1294 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8400 -3.5482 -0.7836 27 1 0.8797 -4.9813 -0.8905 28 1 0.8817 -4.9816 0.8895 29 1 3.1560 -5.9684 0.8876 30 1 3.1548 -5.9685 -0.8923 31 1 0.8625 -7.3566 -0.0012 32 1 1.1940 -9.8785 -0.8928 33 1 1.1935 -9.8790 0.8871 34 1 3.5247 -10.8147 -0.8449 35 1 4.1545 -9.9556 1.3943 36 1 2.9568 -11.0366 2.1460 37 1 5.2279 -12.0269 2.2356 38 1 5.3435 -11.9223 0.4623 39 1 3.2556 -13.5135 2.0197 40 1 4.6666 -14.1979 1.1774 41 1 2.6258 -14.3731 -0.2194 42 1 3.8236 -13.2925 -0.9711 43 1 1.4374 -12.4070 0.7123 44 1 1.5526 -12.3023 -1.0609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519141376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:58 Heat of formation + Delta-G solvation = -99.610684 kcal Electronic energy + Delta-G solvation = -19919.808906 eV Core-core repulsion = 16869.192966 eV Total energy + Delta-G solvation = -3050.615939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03582 -39.10079 -37.63169 -35.67473 -34.35447 -33.59070 -31.54337 -30.68596 -28.45011 -26.98636 -23.94220 -23.46152 -23.08431 -22.49895 -21.11698 -20.56590 -18.65046 -17.84123 -17.17169 -16.97282 -16.57652 -16.29314 -16.05626 -15.30785 -15.21492 -14.94993 -14.80600 -14.61845 -14.29055 -14.16404 -13.64417 -13.29769 -13.02230 -12.92740 -12.84916 -12.70602 -12.53360 -12.45292 -12.33204 -12.00307 -11.93766 -11.81239 -11.37056 -11.30292 -11.23333 -10.88540 -10.66946 -10.54758 -10.06687 -9.20510 -8.24130 -6.35133 1.41617 1.44895 1.52907 1.70002 2.17135 2.40725 3.09376 3.62326 3.73878 3.80629 3.86787 3.95098 4.08398 4.17871 4.28093 4.36167 4.48064 4.52401 4.60637 4.64140 4.70436 4.79011 4.85648 4.89201 4.90812 4.93459 5.07348 5.08938 5.22779 5.23669 5.28882 5.32868 5.36188 5.41936 5.46435 5.59133 5.60709 5.65436 5.98888 6.36873 6.59793 6.66316 6.84795 7.31330 7.35626 8.87099 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.061960 B = 0.002335 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.795938 B =11989.317829 C =12267.966057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.692 5.692 11 C 0.056 3.944 12 C 0.136 3.864 13 N -0.721 5.721 14 C 0.505 3.495 15 O -0.581 6.581 16 C -0.130 4.130 17 C -0.069 4.069 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.110 4.110 23 H 0.266 0.734 24 H -0.033 1.033 25 H 0.004 0.996 26 H 0.337 0.663 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.415 0.585 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -27.521 -0.068 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.323 5.323 11 C -0.074 4.074 12 C 0.011 3.989 13 N -0.374 5.374 14 C 0.294 3.706 15 O -0.461 6.461 16 C -0.169 4.169 17 C -0.088 4.088 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.147 4.147 23 H 0.075 0.925 24 H -0.016 1.016 25 H 0.022 0.978 26 H 0.154 0.846 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.251 0.749 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.303 -27.365 0.619 27.469 hybrid contribution -0.391 1.252 -0.862 1.569 sum 1.912 -26.113 -0.242 26.184 Atomic orbital electron populations 1.70064 1.07691 1.28153 1.51288 1.25942 0.95842 1.03356 0.94527 0.85381 0.78113 0.77641 0.79131 1.19135 1.20684 1.19439 1.21521 0.93861 0.91502 1.50937 0.91815 1.19208 0.90488 0.88455 0.93623 1.60421 1.20807 1.01436 1.49620 1.21998 0.95554 0.88961 1.00851 1.20976 0.94515 0.81831 1.01561 1.45933 1.11191 1.05080 1.75183 1.21447 0.87760 0.86817 0.74612 1.90668 1.16095 1.88236 1.51061 1.21820 0.99305 0.89218 1.06590 1.20877 0.95962 0.93898 0.98068 1.21664 0.98162 0.98611 0.97298 1.21504 0.97804 0.95236 1.01104 1.21541 0.99229 0.96409 0.98286 1.21528 0.97977 0.98847 0.97410 1.21566 0.97699 0.92577 1.02855 0.92522 1.01576 0.97767 0.84556 0.94794 0.91008 0.92354 0.92523 0.74853 0.86383 0.86620 0.92679 0.93147 0.91826 0.92370 0.93294 0.91493 0.91736 0.90713 0.92763 0.90784 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -30.81 9.32 25.60 0.24 -30.57 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.12 5.44 85.56 0.47 11.58 16 10 N -0.69 -29.47 6.49 -517.92 -3.36 -32.83 16 11 C 0.06 1.86 5.80 86.30 0.50 2.36 16 12 C 0.14 3.96 5.94 86.38 0.51 4.47 16 13 N -0.72 -16.14 5.56 -463.08 -2.57 -18.71 16 14 C 0.51 12.01 7.55 87.66 0.66 12.67 16 15 O -0.58 -19.03 13.97 -3.02 -0.04 -19.07 16 16 C -0.13 -1.88 5.17 29.85 0.15 -1.73 16 17 C -0.07 -1.15 1.84 -10.79 -0.02 -1.17 16 18 C -0.12 -2.33 4.94 30.59 0.15 -2.18 16 19 C -0.12 -2.07 5.92 30.60 0.18 -1.89 16 20 C -0.12 -1.53 5.92 30.60 0.18 -1.34 16 21 C -0.12 -1.42 5.92 30.58 0.18 -1.24 16 22 C -0.11 -1.25 5.20 30.58 0.16 -1.09 16 23 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 24 H -0.03 -1.88 8.14 -2.39 -0.02 -1.90 16 25 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.34 13.71 8.72 -89.70 -0.78 12.93 16 27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.41 6.67 8.47 -92.71 -0.79 5.89 16 32 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.17 7.95 -2.39 -0.02 1.15 16 35 H 0.05 1.33 5.95 -2.39 -0.01 1.31 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -69.01 350.22 -0.44 -69.45 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.60 Total: 19.99 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 3.83 Total: -9.57 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -5.65 Total: -107.05 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.04 Total: -19.07 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.01 -0.44 -69.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519141376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.157 kcal (2) G-P(sol) polarization free energy of solvation -69.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds