Wall clock time and date at job start Mon Mar 30 2020 01:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00531 * 2 1 4 4 H 1.48491 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46978 * 300.00289 * 3 2 1 6 6 H 1.48498 * 109.46863 * 60.00097 * 3 2 1 7 7 C 1.37881 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99907 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46981 * 184.62261 * 9 7 2 11 11 C 1.46845 * 111.00395 * 64.06636 * 10 9 7 12 12 C 1.53035 * 109.51993 * 174.16225 * 11 10 9 13 13 C 1.53119 * 109.28376 * 59.18326 * 12 11 10 14 14 C 1.52999 * 109.52599 * 182.37426 * 13 12 11 15 15 O 1.42897 * 109.47118 * 185.33857 * 14 13 12 16 16 N 1.46896 * 109.52368 * 62.24596 * 13 12 11 17 17 C 1.46897 * 111.00059 * 63.47184 * 16 13 12 18 18 C 1.53004 * 109.47059 * 176.29380 * 17 16 13 19 19 C 1.53004 * 117.49762 * 243.74682 * 18 17 16 20 20 C 1.53004 * 117.49817 * 175.09002 * 18 17 16 21 21 C 1.53123 * 109.15618 * 302.34120 * 13 12 11 22 22 C 1.46850 * 110.99821 * 299.85309 * 10 9 7 23 23 H 0.97002 * 119.99719 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47031 * 64.62064 * 9 7 2 25 25 H 1.09003 * 109.47210 * 304.61993 * 9 7 2 26 26 H 1.09002 * 109.46168 * 54.14420 * 11 10 9 27 27 H 1.08997 * 109.46170 * 294.17496 * 11 10 9 28 28 H 1.09000 * 109.50399 * 299.23275 * 12 11 10 29 29 H 1.09008 * 109.49968 * 179.12143 * 12 11 10 30 30 H 1.09001 * 109.46955 * 305.34397 * 14 13 12 31 31 H 1.09003 * 109.47050 * 65.33743 * 14 13 12 32 32 H 0.96703 * 113.99734 * 179.97438 * 15 14 13 33 33 H 1.00901 * 111.00066 * 187.43218 * 16 13 12 34 34 H 1.08996 * 109.47378 * 296.29440 * 17 16 13 35 35 H 1.09002 * 109.47047 * 56.29494 * 17 16 13 36 36 H 1.08998 * 115.54944 * 29.42095 * 18 17 16 37 37 H 1.08994 * 117.50023 * 0.02562 * 19 18 17 38 38 H 1.09004 * 117.49549 * 145.02047 * 19 18 17 39 39 H 1.08996 * 117.49481 * 214.97972 * 20 18 17 40 40 H 1.08999 * 117.49469 * 359.97435 * 20 18 17 41 41 H 1.09002 * 109.50258 * 177.59629 * 21 13 12 42 42 H 1.08997 * 109.50283 * 297.71197 * 21 13 12 43 43 H 1.09002 * 109.46446 * 305.86059 * 22 10 9 44 44 H 1.09006 * 109.46214 * 65.82681 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2016 -3.6136 0.1105 11 6 2.9118 -3.5735 1.3951 12 6 3.7827 -4.8238 1.5371 13 6 4.7846 -4.8762 0.3803 14 6 5.6188 -6.1546 0.4838 15 8 6.6346 -6.1431 -0.5212 16 7 5.6699 -3.7058 0.4442 17 6 6.4746 -3.7209 1.6731 18 6 7.4472 -2.5399 1.6604 19 6 8.9438 -2.8574 1.6346 20 6 8.2985 -2.3122 2.9112 21 6 4.0207 -4.8682 -0.9468 22 6 3.1427 -3.6166 -1.0168 23 1 -0.4850 0.8401 0.0004 24 1 0.6874 -2.5934 -0.9288 25 1 0.5639 -2.5221 0.8454 26 1 2.1879 -3.5407 2.2094 27 1 3.5424 -2.6854 1.4339 28 1 3.1513 -5.7120 1.5122 29 1 4.3217 -4.7863 2.4838 30 1 6.0826 -6.2070 1.4688 31 1 4.9743 -7.0217 0.3391 32 1 7.2033 -6.9252 -0.5145 33 1 6.2590 -3.6529 -0.3732 34 1 5.8173 -3.6409 2.5389 35 1 7.0362 -4.6535 1.7282 36 1 7.1101 -1.6591 1.1139 37 1 9.2354 -3.9075 1.6262 38 1 9.5912 -2.1852 1.0714 39 1 8.5217 -1.2817 3.1873 40 1 8.1653 -3.0036 3.7432 41 1 4.7296 -4.8622 -1.7747 42 1 3.3930 -5.7570 -1.0107 43 1 2.5866 -3.6150 -1.9543 44 1 3.7723 -2.7281 -0.9667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563218541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:48 Heat of formation + Delta-G solvation = -22.513012 kcal Electronic energy + Delta-G solvation = -22063.503126 eV Core-core repulsion = 19016.230392 eV Total energy + Delta-G solvation = -3047.272734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61823 -37.37344 -36.60197 -34.61294 -32.47858 -30.86125 -30.19104 -27.52368 -25.56616 -25.21451 -22.49874 -22.48093 -22.36772 -20.46213 -20.15182 -18.43745 -17.35824 -16.32316 -16.04898 -15.29607 -15.16366 -14.81347 -14.32286 -14.08973 -13.91268 -13.81812 -13.25581 -12.87739 -12.56776 -12.33943 -12.07987 -11.68324 -11.59894 -11.51870 -11.31612 -10.99236 -10.96497 -10.64881 -10.47958 -10.28743 -10.26439 -10.16667 -10.04899 -9.90011 -9.61876 -9.53513 -9.31086 -8.32132 -8.05971 -6.93570 -5.90468 -3.98303 3.33862 3.41754 3.47387 3.77941 4.05052 4.42267 4.51179 4.81608 4.92594 4.95738 5.07308 5.18060 5.25704 5.35254 5.39262 5.41399 5.53961 5.57368 5.60181 5.71159 5.82984 5.93778 5.97234 6.06343 6.12692 6.21594 6.28762 6.35633 6.42022 6.42848 6.67757 6.82758 7.06715 7.18444 7.37858 7.44604 7.50634 7.67182 7.75560 8.03676 8.25049 8.45878 8.50994 9.14632 9.68056 11.14160 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.006507 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.280656 B = 4301.776057 C = 5497.234537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.187 3.813 10 N -0.543 5.543 11 C 0.074 3.926 12 C -0.102 4.102 13 C 0.124 3.876 14 C 0.046 3.954 15 O -0.568 6.568 16 N -0.659 5.659 17 C 0.090 3.910 18 C -0.145 4.145 19 C -0.184 4.184 20 C -0.179 4.179 21 C -0.099 4.099 22 C 0.069 3.931 23 H 0.259 0.741 24 H 0.025 0.975 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.373 0.627 33 H 0.345 0.655 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.082 -11.514 3.199 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.061 3.939 10 N -0.267 5.267 11 C -0.054 4.054 12 C -0.141 4.141 13 C 0.033 3.967 14 C -0.034 4.034 15 O -0.373 6.373 16 N -0.290 5.290 17 C -0.040 4.040 18 C -0.164 4.164 19 C -0.221 4.221 20 C -0.217 4.217 21 C -0.137 4.137 22 C -0.059 4.059 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.164 0.836 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.877 -10.837 3.299 17.914 hybrid contribution 1.805 0.502 0.055 1.875 sum 15.683 -10.335 3.354 19.079 Atomic orbital electron populations 1.69966 1.06010 1.26434 1.51091 1.24972 0.94703 0.99061 0.95268 0.86620 0.80344 0.84152 0.77412 1.19736 1.21183 1.21189 1.21898 0.93754 0.91900 1.50310 0.91847 1.19714 0.90914 0.85798 0.97452 1.62460 1.17041 1.46324 1.00866 1.21661 0.95503 0.95588 0.92688 1.21663 0.96445 1.00384 0.95569 1.21026 0.91970 0.85961 0.97763 1.23052 0.90125 1.00086 0.90134 1.86462 1.47277 1.46858 1.56659 1.60557 1.23575 1.40485 1.04381 1.21538 0.93688 0.94321 0.94407 1.22356 0.91244 1.01145 1.01629 1.23020 0.96137 1.01449 1.01498 1.22909 1.04860 1.02031 0.91874 1.21615 0.97564 0.99749 0.94771 1.21754 0.93950 0.95882 0.94342 0.93109 0.95682 0.95156 0.92578 0.92778 0.91728 0.92678 0.94011 0.93527 0.78083 0.83589 0.90752 0.95436 0.86938 0.89277 0.89151 0.88902 0.89087 0.92098 0.91895 0.92565 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.54 -15.14 7.73 -34.44 -0.27 -15.40 16 8 H 0.06 1.79 5.85 -52.49 -0.31 1.49 16 9 C 0.19 4.94 5.12 -4.97 -0.03 4.92 16 10 N -0.54 -11.90 4.86 -236.11 -1.15 -13.04 16 11 C 0.07 1.48 4.96 -3.84 -0.02 1.46 16 12 C -0.10 -1.59 4.67 -26.65 -0.12 -1.71 16 13 C 0.12 1.80 0.38 -131.48 -0.05 1.75 16 14 C 0.05 0.53 5.27 37.16 0.20 0.73 16 15 O -0.57 -6.32 12.66 -35.23 -0.45 -6.77 16 16 N -0.66 -9.84 4.73 -99.84 -0.47 -10.32 16 17 C 0.09 1.17 5.20 -3.82 -0.02 1.15 16 18 C -0.15 -1.83 5.91 -90.61 -0.54 -2.37 16 19 C -0.18 -1.95 10.18 -26.69 -0.27 -2.22 16 20 C -0.18 -1.93 10.25 -26.69 -0.27 -2.21 16 21 C -0.10 -1.60 4.86 -26.65 -0.13 -1.73 16 22 C 0.07 1.40 4.90 -3.83 -0.02 1.38 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 26 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 27 H 0.05 1.20 6.54 -51.93 -0.34 0.86 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.77 6.46 -51.92 -0.34 0.44 16 30 H 0.04 0.46 6.60 -51.93 -0.34 0.11 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.37 2.51 9.12 45.56 0.42 2.92 16 33 H 0.35 5.22 8.14 -39.29 -0.32 4.90 16 34 H 0.07 1.04 6.53 -51.93 -0.34 0.70 16 35 H 0.03 0.34 5.90 -51.93 -0.31 0.03 16 36 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 37 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.17 8.12 -51.93 -0.42 0.74 16 44 H 0.05 1.17 6.14 -51.93 -0.32 0.85 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -30.26 336.27 -9.72 -39.98 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.80 Total: 6.83 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.64 Total: -12.57 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.88 Total: -49.57 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.45 Total: -6.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.26 -9.72 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563218541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.467 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds