Wall clock time and date at job start Mon Mar 30 2020 01:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00531 * 2 1 4 4 H 1.48491 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46978 * 300.00289 * 3 2 1 6 6 H 1.48498 * 109.46863 * 60.00097 * 3 2 1 7 7 C 1.37881 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99907 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46981 * 184.62261 * 9 7 2 11 11 C 1.46845 * 111.00395 * 64.06636 * 10 9 7 12 12 C 1.53035 * 109.51993 * 174.16225 * 11 10 9 13 13 C 1.53119 * 109.28376 * 59.18326 * 12 11 10 14 14 C 1.52999 * 109.52599 * 182.37426 * 13 12 11 15 15 O 1.42897 * 109.47118 * 185.33857 * 14 13 12 16 16 N 1.46896 * 109.52368 * 62.24596 * 13 12 11 17 17 C 1.46897 * 111.00059 * 63.47184 * 16 13 12 18 18 C 1.53004 * 109.47059 * 176.29380 * 17 16 13 19 19 C 1.53004 * 117.49762 * 243.74682 * 18 17 16 20 20 C 1.53004 * 117.49817 * 175.09002 * 18 17 16 21 21 C 1.53123 * 109.15618 * 302.34120 * 13 12 11 22 22 C 1.46850 * 110.99821 * 299.85309 * 10 9 7 23 23 H 0.97002 * 119.99719 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47031 * 64.62064 * 9 7 2 25 25 H 1.09003 * 109.47210 * 304.61993 * 9 7 2 26 26 H 1.09002 * 109.46168 * 54.14420 * 11 10 9 27 27 H 1.08997 * 109.46170 * 294.17496 * 11 10 9 28 28 H 1.09000 * 109.50399 * 299.23275 * 12 11 10 29 29 H 1.09008 * 109.49968 * 179.12143 * 12 11 10 30 30 H 1.09001 * 109.46955 * 305.34397 * 14 13 12 31 31 H 1.09003 * 109.47050 * 65.33743 * 14 13 12 32 32 H 0.96703 * 113.99734 * 179.97438 * 15 14 13 33 33 H 1.00901 * 111.00066 * 187.43218 * 16 13 12 34 34 H 1.08996 * 109.47378 * 296.29440 * 17 16 13 35 35 H 1.09002 * 109.47047 * 56.29494 * 17 16 13 36 36 H 1.08998 * 115.54944 * 29.42095 * 18 17 16 37 37 H 1.08994 * 117.50023 * 0.02562 * 19 18 17 38 38 H 1.09004 * 117.49549 * 145.02047 * 19 18 17 39 39 H 1.08996 * 117.49481 * 214.97972 * 20 18 17 40 40 H 1.08999 * 117.49469 * 359.97435 * 20 18 17 41 41 H 1.09002 * 109.50258 * 177.59629 * 21 13 12 42 42 H 1.08997 * 109.50283 * 297.71197 * 21 13 12 43 43 H 1.09002 * 109.46446 * 305.86059 * 22 10 9 44 44 H 1.09006 * 109.46214 * 65.82681 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2016 -3.6136 0.1105 11 6 2.9118 -3.5735 1.3951 12 6 3.7827 -4.8238 1.5371 13 6 4.7846 -4.8762 0.3803 14 6 5.6188 -6.1546 0.4838 15 8 6.6346 -6.1431 -0.5212 16 7 5.6699 -3.7058 0.4442 17 6 6.4746 -3.7209 1.6731 18 6 7.4472 -2.5399 1.6604 19 6 8.9438 -2.8574 1.6346 20 6 8.2985 -2.3122 2.9112 21 6 4.0207 -4.8682 -0.9468 22 6 3.1427 -3.6166 -1.0168 23 1 -0.4850 0.8401 0.0004 24 1 0.6874 -2.5934 -0.9288 25 1 0.5639 -2.5221 0.8454 26 1 2.1879 -3.5407 2.2094 27 1 3.5424 -2.6854 1.4339 28 1 3.1513 -5.7120 1.5122 29 1 4.3217 -4.7863 2.4838 30 1 6.0826 -6.2070 1.4688 31 1 4.9743 -7.0217 0.3391 32 1 7.2033 -6.9252 -0.5145 33 1 6.2590 -3.6529 -0.3732 34 1 5.8173 -3.6409 2.5389 35 1 7.0362 -4.6535 1.7282 36 1 7.1101 -1.6591 1.1139 37 1 9.2354 -3.9075 1.6262 38 1 9.5912 -2.1852 1.0714 39 1 8.5217 -1.2817 3.1873 40 1 8.1653 -3.0036 3.7432 41 1 4.7296 -4.8622 -1.7747 42 1 3.3930 -5.7570 -1.0107 43 1 2.5866 -3.6150 -1.9543 44 1 3.7723 -2.7281 -0.9667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563218541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:47 Heat of formation + Delta-G solvation = -45.374415 kcal Electronic energy + Delta-G solvation = -22064.494470 eV Core-core repulsion = 19016.230392 eV Total energy + Delta-G solvation = -3048.264078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86726 -38.48783 -37.72777 -35.92405 -34.47799 -32.28048 -31.66002 -29.15412 -27.05080 -26.51267 -24.27530 -23.94216 -23.22359 -21.91412 -21.31768 -19.83698 -18.42419 -18.15005 -17.07468 -16.92405 -16.35151 -16.16987 -15.77139 -15.59115 -15.23766 -14.94310 -14.84452 -14.28877 -13.97448 -13.69644 -13.58527 -13.14192 -12.96390 -12.87589 -12.82318 -12.44422 -12.37074 -12.19738 -12.06517 -12.05581 -11.85830 -11.66105 -11.22066 -11.17767 -11.13337 -10.78645 -10.72564 -10.57692 -9.19859 -8.80898 -8.10067 -6.29684 1.35007 1.36229 1.49294 2.39349 2.88506 3.11133 3.12581 3.44394 3.56549 3.80946 3.92960 4.00329 4.08557 4.18948 4.27309 4.39374 4.50954 4.54532 4.59831 4.69112 4.75416 4.77717 4.80715 4.90228 4.92004 5.00443 5.02730 5.08658 5.13300 5.25754 5.26814 5.34245 5.37576 5.40911 5.42076 5.53329 5.80672 6.14122 6.31605 6.37306 6.60953 6.69207 6.91940 6.93681 7.41270 8.90879 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.006507 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.280656 B = 4301.776057 C = 5497.234537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.200 3.800 10 N -0.539 5.539 11 C 0.078 3.922 12 C -0.093 4.093 13 C 0.123 3.877 14 C 0.057 3.943 15 O -0.581 6.581 16 N -0.678 5.678 17 C 0.098 3.902 18 C -0.168 4.168 19 C -0.169 4.169 20 C -0.173 4.173 21 C -0.087 4.087 22 C 0.073 3.927 23 H 0.263 0.737 24 H -0.001 1.001 25 H 0.003 0.997 26 H 0.043 0.957 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.395 0.605 33 H 0.343 0.657 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.545 -12.741 3.794 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.263 5.263 11 C -0.051 4.051 12 C -0.131 4.131 13 C 0.032 3.968 14 C -0.022 4.022 15 O -0.389 6.389 16 N -0.309 5.309 17 C -0.031 4.031 18 C -0.187 4.187 19 C -0.205 4.205 20 C -0.211 4.211 21 C -0.125 4.125 22 C -0.055 4.055 23 H 0.072 0.928 24 H 0.017 0.983 25 H 0.021 0.979 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 16.366 -12.095 3.896 20.720 hybrid contribution 1.029 0.882 -0.152 1.364 sum 17.395 -11.213 3.744 21.032 Atomic orbital electron populations 1.70081 1.07499 1.27567 1.51887 1.25803 0.95573 1.02718 0.94873 0.85541 0.78924 0.79676 0.77745 1.19442 1.20411 1.20382 1.22043 0.93485 0.92804 1.50001 0.92425 1.19380 0.91347 0.87201 0.94805 1.62415 1.17486 1.43787 1.02569 1.21637 0.95170 0.97237 0.91039 1.21571 0.96235 0.98022 0.97266 1.20948 0.92120 0.87849 0.95878 1.22774 0.90259 0.98165 0.91029 1.86410 1.47519 1.48546 1.56437 1.60521 1.24176 1.41224 1.05028 1.21461 0.93407 0.95160 0.93028 1.22253 0.92623 1.00404 1.03395 1.23068 0.94308 1.02280 1.00885 1.22997 1.03591 1.02611 0.91880 1.21502 0.97120 0.97415 0.96506 1.21727 0.93461 0.97383 0.92956 0.92779 0.98316 0.97853 0.93828 0.95412 0.90513 0.90606 0.92557 0.92330 0.75580 0.83799 0.91857 0.93778 0.89548 0.88033 0.88665 0.88675 0.87924 0.91223 0.91010 0.93967 0.95398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.54 -31.60 7.73 25.60 0.20 -31.40 16 8 H 0.06 3.37 5.85 -2.91 -0.02 3.35 16 9 C 0.20 11.07 5.12 85.56 0.44 11.51 16 10 N -0.54 -24.30 4.86 -900.90 -4.38 -28.67 16 11 C 0.08 3.14 4.96 86.33 0.43 3.57 16 12 C -0.09 -2.72 4.67 30.65 0.14 -2.58 16 13 C 0.12 3.33 0.38 3.61 0.00 3.34 16 14 C 0.06 1.12 5.27 71.98 0.38 1.50 16 15 O -0.58 -10.80 12.66 -148.98 -1.89 -12.68 16 16 N -0.68 -19.55 4.73 -469.79 -2.22 -21.77 16 17 C 0.10 2.40 5.20 86.31 0.45 2.85 16 18 C -0.17 -4.05 5.91 -10.79 -0.06 -4.11 16 19 C -0.17 -3.16 10.18 30.62 0.31 -2.85 16 20 C -0.17 -3.39 10.25 30.62 0.31 -3.08 16 21 C -0.09 -2.71 4.86 30.65 0.15 -2.56 16 22 C 0.07 3.01 4.90 86.33 0.42 3.44 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.00 0.20 8.10 -2.39 -0.02 0.18 16 26 H 0.04 1.83 8.09 -2.39 -0.02 1.81 16 27 H 0.03 1.27 6.54 -2.39 -0.02 1.25 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.08 1.94 6.46 -2.38 -0.02 1.93 16 30 H 0.06 0.97 6.60 -2.39 -0.02 0.96 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.39 3.67 9.12 -74.06 -0.68 2.99 16 33 H 0.34 10.02 8.14 -89.69 -0.73 9.30 16 34 H 0.06 1.66 6.53 -2.39 -0.02 1.65 16 35 H 0.04 0.93 5.90 -2.39 -0.01 0.92 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 37 H 0.10 1.67 8.03 -2.39 -0.02 1.65 16 38 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.06 7.92 -2.39 -0.02 2.04 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.81 8.12 -2.39 -0.02 1.79 16 44 H 0.03 1.28 6.14 -2.38 -0.01 1.27 16 Total: -1.00 -66.89 336.27 -2.96 -69.84 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.41 Total: 21.63 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.63 Total: -19.40 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -6.31 Total: -107.48 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.89 Total: -12.68 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -66.89 -2.96 -69.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563218541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.468 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds