Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 110.27139 * 2 1 4 4 C 1.54597 * 110.31305 * 237.80634 * 2 1 3 5 5 C 1.54934 * 102.92270 * 263.04131 * 4 2 1 6 6 N 1.48539 * 103.22340 * 322.58191 * 5 4 2 7 7 C 1.46906 * 110.99911 * 159.72267 * 6 5 4 8 8 C 1.50703 * 109.47109 * 52.60277 * 7 6 5 9 9 O 1.21282 * 120.00082 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99978 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46811 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46886 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46999 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99700 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00377 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46883 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47363 * 119.99368 * 18 16 14 21 21 H 1.48497 * 109.46870 * 239.99844 * 18 16 14 22 22 C 1.47897 * 105.82268 * 39.21048 * 6 5 4 23 23 H 1.08993 * 109.47170 * 297.90792 * 1 2 3 24 24 H 1.08996 * 109.46937 * 57.91363 * 1 2 3 25 25 H 1.09005 * 109.46483 * 177.91101 * 1 2 3 26 26 H 1.08999 * 109.46453 * 182.08995 * 3 2 1 27 27 H 1.08997 * 109.46567 * 302.08568 * 3 2 1 28 28 H 1.08997 * 109.46859 * 62.09116 * 3 2 1 29 29 H 1.09000 * 110.72357 * 21.39648 * 4 2 1 30 30 H 1.08998 * 110.72956 * 144.50235 * 4 2 1 31 31 H 1.08998 * 110.66959 * 204.15351 * 5 4 2 32 32 H 1.08992 * 110.66980 * 81.01654 * 5 4 2 33 33 H 1.08992 * 109.47459 * 172.60196 * 7 6 5 34 34 H 1.09004 * 109.47040 * 292.60346 * 7 6 5 35 35 H 0.97002 * 119.99767 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47703 * 299.99475 * 11 10 8 37 37 H 1.09001 * 109.47464 * 60.00214 * 11 10 8 38 38 H 1.09001 * 109.47377 * 299.99818 * 12 11 10 39 39 H 1.08996 * 109.47261 * 60.00359 * 12 11 10 40 40 H 1.09001 * 109.47600 * 300.00455 * 13 12 11 41 41 H 1.09004 * 109.47006 * 60.00233 * 13 12 11 42 42 H 0.96999 * 120.00022 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.92311 * 94.01773 * 22 6 5 44 44 H 1.08994 * 109.92026 * 215.11778 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0666 -0.7724 -1.2269 5 6 2.3585 -2.1802 -0.6495 6 7 2.8810 -1.8883 0.7099 7 6 2.7670 -3.0652 1.5817 8 6 3.4047 -4.2530 0.9081 9 8 3.9045 -4.1312 -0.1902 10 7 3.4187 -5.4507 1.5258 11 6 4.0391 -6.6052 0.8713 12 6 3.9202 -7.8310 1.7792 13 6 4.5676 -9.0369 1.0953 14 6 4.4511 -10.2440 1.9898 15 1 3.9637 -10.1597 2.9499 16 6 4.9668 -11.4562 1.5826 17 7 5.5599 -11.5590 0.4132 18 14 4.8218 -12.9528 2.6911 19 1 4.1164 -12.5755 3.9423 20 1 4.0552 -14.0148 1.9912 21 1 6.1788 -13.4575 3.0212 22 6 2.0646 -0.7672 1.2236 23 1 -0.3633 0.4810 0.9081 24 1 -0.3633 0.5459 -0.8707 25 1 -0.3632 -1.0271 -0.0375 26 1 3.1493 1.4202 -0.0375 27 1 1.6739 1.9652 -0.8707 28 1 1.7347 1.9428 0.9081 29 1 1.3104 -0.8260 -2.0100 30 1 2.9789 -0.3108 -1.6047 31 1 3.1106 -2.6934 -1.2486 32 1 1.4435 -2.7696 -0.5916 33 1 3.2736 -2.8681 2.5264 34 1 1.7146 -3.2766 1.7710 35 1 3.0187 -5.5482 2.4041 36 1 3.5332 -6.8023 -0.0739 37 1 5.0917 -6.3938 0.6828 38 1 4.4265 -7.6337 2.7242 39 1 2.8678 -8.0426 1.9680 40 1 4.0612 -9.2340 0.1505 41 1 5.6201 -8.8255 0.9061 42 1 5.9224 -12.4118 0.1266 43 1 1.2324 -1.1530 1.8124 44 1 2.6804 -0.1101 1.8376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563971965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = -53.875413 kcal Electronic energy + Delta-G solvation = -20278.091186 eV Core-core repulsion = 17229.458476 eV Total energy + Delta-G solvation = -3048.632709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25063 -38.82007 -35.50047 -34.25559 -33.32982 -31.35157 -30.10699 -28.15916 -27.63434 -26.42581 -24.54473 -22.95833 -21.52933 -20.75426 -19.95031 -19.23752 -16.90932 -16.50180 -16.03042 -15.74772 -15.37920 -14.92738 -14.52119 -14.43493 -14.24250 -13.87754 -13.62481 -13.44121 -13.08078 -12.63859 -12.29870 -12.13512 -11.98686 -11.84302 -11.72925 -11.66264 -11.47403 -10.96482 -10.92913 -10.83466 -10.76443 -10.69914 -10.56013 -9.88024 -9.70775 -9.30774 -9.10403 -8.78898 -8.51254 -8.38558 -6.02946 -4.06046 2.77956 3.23008 3.29118 3.36686 3.40209 3.94072 4.27957 4.42435 4.43762 4.56668 4.83094 5.04217 5.07773 5.13328 5.14656 5.19358 5.32072 5.32870 5.34744 5.42702 5.59202 5.61959 5.68638 5.71499 5.77026 5.77927 5.90921 5.98002 6.08810 6.15358 6.17682 6.51744 6.58974 6.72840 6.77334 6.85339 6.99783 7.62639 7.71796 7.74960 7.95910 8.36340 8.42986 9.00894 9.58227 11.08387 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.059273 B = 0.002542 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.275924 B =11014.393806 C =11172.146274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 C -0.135 4.135 4 C -0.117 4.117 5 C 0.032 3.968 6 N -0.500 5.500 7 C 0.026 3.974 8 C 0.507 3.493 9 O -0.529 6.529 10 N -0.727 5.727 11 C 0.118 3.882 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.043 3.957 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.036 0.964 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 24.136 1.706 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.155 4.155 5 C -0.095 4.095 6 N -0.224 5.224 7 C -0.106 4.106 8 C 0.292 3.708 9 O -0.406 6.406 10 N -0.379 5.379 11 C -0.005 4.005 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.085 4.085 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.109 24.212 0.782 25.881 hybrid contribution -1.125 -1.285 1.173 2.072 sum -10.233 22.927 1.954 25.183 Atomic orbital electron populations 1.21905 0.94173 1.01698 1.01811 1.21427 0.95327 0.95879 0.95286 1.21844 1.01294 0.94600 1.01483 1.22678 1.01045 0.95349 0.96403 1.23512 0.99228 0.96294 0.90435 1.64684 1.51038 1.04339 1.02328 1.22248 1.00092 0.90244 0.97972 1.20416 0.80186 0.83949 0.86215 1.90635 1.45593 1.84221 1.20151 1.46195 1.59992 1.09630 1.22038 1.21630 0.97781 0.84344 0.96731 1.21886 1.01112 0.94533 0.98314 1.19037 0.95969 0.90530 0.95908 1.21240 1.37252 0.94087 1.03425 0.92603 1.25043 0.95266 0.99045 0.95187 1.69979 1.38388 1.25299 1.19597 0.86523 0.77772 0.82882 0.80728 1.19768 1.20996 1.20983 1.23085 0.95515 0.93398 0.96511 0.92590 0.92380 0.92790 0.92080 0.92664 0.92771 0.91217 0.90609 0.86866 0.94571 0.87856 0.92011 0.76901 0.91864 0.91744 0.92713 0.92798 0.96294 0.96253 0.92968 0.93710 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.21 37.16 0.30 -0.67 16 2 C -0.08 -0.64 0.97 -153.14 -0.15 -0.79 16 3 C -0.13 -0.95 8.24 37.16 0.31 -0.64 16 4 C -0.12 -1.11 6.16 -24.87 -0.15 -1.27 16 5 C 0.03 0.39 5.30 -1.90 -0.01 0.38 16 6 N -0.50 -5.83 5.26 -231.89 -1.22 -7.05 16 7 C 0.03 0.28 5.52 -4.97 -0.03 0.25 16 8 C 0.51 7.38 7.54 -10.98 -0.08 7.30 16 9 O -0.53 -9.68 13.52 5.56 0.08 -9.60 16 10 N -0.73 -10.21 5.56 -60.29 -0.33 -10.55 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.04 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.04 0.39 6.02 -2.75 -0.02 0.37 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 30 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 31 H 0.11 1.69 5.97 -51.93 -0.31 1.38 16 32 H 0.04 0.44 8.02 -51.93 -0.42 0.02 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 35 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 43 H 0.04 0.37 7.11 -51.93 -0.37 0.00 16 44 H 0.08 0.68 7.69 -51.93 -0.40 0.28 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -31.87 349.55 -9.13 -41.01 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.10 Total: -0.99 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.54 Total: -8.43 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.82 Total: -43.72 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.87 -9.13 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563971965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.869 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds