Wall clock time and date at job start Mon Mar 30 2020 01:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 110.27139 * 2 1 4 4 C 1.54597 * 110.31305 * 237.80634 * 2 1 3 5 5 C 1.54934 * 102.92270 * 263.04131 * 4 2 1 6 6 N 1.48539 * 103.22340 * 322.58191 * 5 4 2 7 7 C 1.46906 * 110.99911 * 159.72267 * 6 5 4 8 8 C 1.50703 * 109.47109 * 52.60277 * 7 6 5 9 9 O 1.21282 * 120.00082 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99978 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46811 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46886 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46999 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99700 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00377 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46883 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47363 * 119.99368 * 18 16 14 21 21 H 1.48497 * 109.46870 * 239.99844 * 18 16 14 22 22 C 1.47897 * 105.82268 * 39.21048 * 6 5 4 23 23 H 1.08993 * 109.47170 * 297.90792 * 1 2 3 24 24 H 1.08996 * 109.46937 * 57.91363 * 1 2 3 25 25 H 1.09005 * 109.46483 * 177.91101 * 1 2 3 26 26 H 1.08999 * 109.46453 * 182.08995 * 3 2 1 27 27 H 1.08997 * 109.46567 * 302.08568 * 3 2 1 28 28 H 1.08997 * 109.46859 * 62.09116 * 3 2 1 29 29 H 1.09000 * 110.72357 * 21.39648 * 4 2 1 30 30 H 1.08998 * 110.72956 * 144.50235 * 4 2 1 31 31 H 1.08998 * 110.66959 * 204.15351 * 5 4 2 32 32 H 1.08992 * 110.66980 * 81.01654 * 5 4 2 33 33 H 1.08992 * 109.47459 * 172.60196 * 7 6 5 34 34 H 1.09004 * 109.47040 * 292.60346 * 7 6 5 35 35 H 0.97002 * 119.99767 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47703 * 299.99475 * 11 10 8 37 37 H 1.09001 * 109.47464 * 60.00214 * 11 10 8 38 38 H 1.09001 * 109.47377 * 299.99818 * 12 11 10 39 39 H 1.08996 * 109.47261 * 60.00359 * 12 11 10 40 40 H 1.09001 * 109.47600 * 300.00455 * 13 12 11 41 41 H 1.09004 * 109.47006 * 60.00233 * 13 12 11 42 42 H 0.96999 * 120.00022 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.92311 * 94.01773 * 22 6 5 44 44 H 1.08994 * 109.92026 * 215.11778 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0666 -0.7724 -1.2269 5 6 2.3585 -2.1802 -0.6495 6 7 2.8810 -1.8883 0.7099 7 6 2.7670 -3.0652 1.5817 8 6 3.4047 -4.2530 0.9081 9 8 3.9045 -4.1312 -0.1902 10 7 3.4187 -5.4507 1.5258 11 6 4.0391 -6.6052 0.8713 12 6 3.9202 -7.8310 1.7792 13 6 4.5676 -9.0369 1.0953 14 6 4.4511 -10.2440 1.9898 15 1 3.9637 -10.1597 2.9499 16 6 4.9668 -11.4562 1.5826 17 7 5.5599 -11.5590 0.4132 18 14 4.8218 -12.9528 2.6911 19 1 4.1164 -12.5755 3.9423 20 1 4.0552 -14.0148 1.9912 21 1 6.1788 -13.4575 3.0212 22 6 2.0646 -0.7672 1.2236 23 1 -0.3633 0.4810 0.9081 24 1 -0.3633 0.5459 -0.8707 25 1 -0.3632 -1.0271 -0.0375 26 1 3.1493 1.4202 -0.0375 27 1 1.6739 1.9652 -0.8707 28 1 1.7347 1.9428 0.9081 29 1 1.3104 -0.8260 -2.0100 30 1 2.9789 -0.3108 -1.6047 31 1 3.1106 -2.6934 -1.2486 32 1 1.4435 -2.7696 -0.5916 33 1 3.2736 -2.8681 2.5264 34 1 1.7146 -3.2766 1.7710 35 1 3.0187 -5.5482 2.4041 36 1 3.5332 -6.8023 -0.0739 37 1 5.0917 -6.3938 0.6828 38 1 4.4265 -7.6337 2.7242 39 1 2.8678 -8.0426 1.9680 40 1 4.0612 -9.2340 0.1505 41 1 5.6201 -8.8255 0.9061 42 1 5.9224 -12.4118 0.1266 43 1 1.2324 -1.1530 1.8124 44 1 2.6804 -0.1101 1.8376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563971965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:40 Heat of formation + Delta-G solvation = -75.868599 kcal Electronic energy + Delta-G solvation = -20279.044882 eV Core-core repulsion = 17229.458476 eV Total energy + Delta-G solvation = -3049.586405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23844 -39.80446 -36.99666 -35.22191 -35.06877 -33.09939 -30.99593 -29.35390 -28.18313 -27.89148 -25.57684 -24.54410 -22.51436 -22.30664 -21.21960 -19.97283 -18.56893 -17.92341 -17.19344 -16.86540 -16.51339 -16.42748 -15.94457 -15.70822 -15.08613 -14.69684 -14.48599 -14.40465 -14.24040 -13.93357 -13.75197 -13.53714 -13.36194 -12.86797 -12.72830 -12.59294 -12.55201 -12.40731 -12.34963 -12.27805 -11.69411 -11.63640 -11.59109 -11.49526 -11.39996 -11.20061 -10.58159 -10.57240 -10.08365 -9.36831 -8.20600 -6.32212 1.41236 1.41455 1.54720 1.63367 2.11017 2.41696 3.08172 3.13191 3.58814 3.67347 3.89025 3.93384 4.18257 4.18875 4.26700 4.32244 4.38184 4.42306 4.50965 4.54145 4.66513 4.80390 4.84342 4.90494 4.93236 4.94565 5.00437 5.09547 5.13336 5.15760 5.20197 5.32040 5.36491 5.47115 5.49725 5.54818 5.69332 5.83170 5.87454 5.99380 6.21134 6.61374 6.85743 7.29937 7.37576 8.91799 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.059273 B = 0.002542 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.275924 B =11014.393806 C =11172.146274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.132 4.132 4 C -0.114 4.114 5 C 0.034 3.966 6 N -0.520 5.520 7 C 0.034 3.966 8 C 0.503 3.497 9 O -0.572 6.572 10 N -0.715 5.715 11 C 0.132 3.868 12 C -0.101 4.101 13 C 0.022 3.978 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.043 3.957 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.416 0.584 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.068 0.932 40 H -0.009 1.009 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.059 0.941 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 25.222 4.124 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 C -0.189 4.189 4 C -0.152 4.152 5 C -0.093 4.093 6 N -0.245 5.245 7 C -0.097 4.097 8 C 0.290 3.710 9 O -0.451 6.451 10 N -0.368 5.368 11 C 0.008 3.992 12 C -0.139 4.139 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.084 4.084 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.146 0.854 34 H 0.105 0.895 35 H 0.253 0.747 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.833 25.322 3.244 27.732 hybrid contribution -0.570 -1.596 0.370 1.735 sum -11.403 23.725 3.614 26.570 Atomic orbital electron populations 1.21877 0.93036 1.01554 1.02767 1.21444 0.96175 0.96130 0.93930 1.21815 1.00641 0.93988 1.02459 1.22653 1.01072 0.94088 0.97390 1.23321 0.97793 0.97332 0.90858 1.64646 1.52308 1.05292 1.02268 1.22278 1.01296 0.88147 0.97984 1.21187 0.79402 0.84722 0.85705 1.90645 1.47407 1.84898 1.22190 1.45960 1.59644 1.08576 1.22665 1.21179 0.96906 0.85124 0.96001 1.21588 1.01359 0.92630 0.98278 1.18956 0.94509 0.92894 0.95163 1.21711 1.36998 0.94988 1.04049 0.91470 1.26055 0.94817 1.02709 0.96702 1.70124 1.39519 1.26300 1.21684 0.85346 0.77923 0.78448 0.78993 1.18124 1.20570 1.20589 1.23158 0.95755 0.92555 0.96922 0.91342 0.91785 0.93440 0.93060 0.92048 0.91477 0.90404 0.91429 0.90502 0.94876 0.85371 0.89495 0.74734 0.93493 0.93532 0.91310 0.91331 0.99051 0.99077 0.92810 0.92308 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.21 71.98 0.59 -0.96 16 2 C -0.08 -1.09 0.97 -51.30 -0.05 -1.14 16 3 C -0.13 -1.57 8.24 71.99 0.59 -0.98 16 4 C -0.11 -2.12 6.16 31.80 0.20 -1.92 16 5 C 0.03 0.84 5.30 86.65 0.46 1.30 16 6 N -0.52 -11.48 5.26 -887.57 -4.67 -16.15 16 7 C 0.03 0.66 5.52 85.56 0.47 1.13 16 8 C 0.50 14.32 7.54 87.66 0.66 14.98 16 9 O -0.57 -21.58 13.52 -3.04 -0.04 -21.62 16 10 N -0.72 -19.27 5.56 -463.06 -2.57 -21.84 16 11 C 0.13 4.69 5.67 86.38 0.49 5.18 16 12 C -0.10 -3.87 5.27 30.60 0.16 -3.70 16 13 C 0.02 1.18 4.97 29.85 0.15 1.32 16 14 C -0.54 -30.16 9.11 25.60 0.23 -29.92 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 16 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 17 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 18 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.04 0.67 6.02 86.45 0.52 1.19 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.05 0.72 8.11 -2.39 -0.02 0.70 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 1.28 7.85 -2.39 -0.02 1.27 16 30 H 0.07 1.35 7.85 -2.39 -0.02 1.33 16 31 H 0.08 2.44 5.97 -2.39 -0.01 2.43 16 32 H 0.03 0.80 8.02 -2.39 -0.02 0.78 16 33 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.29 7.81 -2.38 -0.02 1.28 16 35 H 0.42 8.14 8.47 -92.71 -0.79 7.36 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H -0.01 -0.53 8.14 -2.38 -0.02 -0.54 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 43 H 0.06 0.76 7.11 -2.39 -0.02 0.74 16 44 H 0.09 1.24 7.69 -2.39 -0.02 1.23 16 Total: -1.00 -70.75 349.55 0.13 -70.62 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.16 Total: 13.69 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.94 Total: -13.37 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -6.96 Total: -95.19 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.04 Total: -21.62 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.75 0.13 -70.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563971965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.246 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds