Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 C 1.53005 * 109.47143 * 240.00253 * 2 1 3 5 5 C 1.50699 * 109.47000 * 59.99518 * 4 2 1 6 6 H 1.07994 * 120.00321 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99730 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99642 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99977 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46729 * 90.00475 * 9 7 5 11 11 H 1.48495 * 109.47205 * 210.00224 * 9 7 5 12 12 H 1.48499 * 109.47274 * 330.00465 * 9 7 5 13 13 C 1.52993 * 109.47073 * 119.99900 * 2 1 3 14 14 N 1.46498 * 109.47540 * 300.00066 * 13 2 1 15 15 C 1.34771 * 120.00530 * 180.02562 * 14 13 2 16 16 O 1.21592 * 119.99810 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00552 * 180.02562 * 15 14 13 18 18 C 1.47066 * 136.05267 * 359.97438 * 17 15 14 19 19 C 1.53503 * 87.98596 * 207.15281 * 18 17 15 20 20 C 1.47060 * 136.06153 * 180.02562 * 17 15 14 21 21 C 1.53002 * 113.46780 * 267.62546 * 20 17 15 22 22 C 1.53001 * 113.46708 * 38.00420 * 20 17 15 23 23 H 1.09000 * 109.47715 * 299.99960 * 1 2 3 24 24 H 1.09004 * 109.47361 * 60.00111 * 1 2 3 25 25 H 1.09001 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46960 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47044 * 300.00083 * 3 2 1 28 28 H 1.09003 * 109.47448 * 60.00092 * 3 2 1 29 29 H 1.09000 * 109.47181 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.46615 * 299.99837 * 4 2 1 31 31 H 0.96997 * 119.99456 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46932 * 180.02562 * 13 2 1 33 33 H 1.09004 * 109.47364 * 60.00259 * 13 2 1 34 34 H 0.97004 * 119.99708 * 359.97438 * 14 13 2 35 35 H 1.09000 * 113.46827 * 321.92886 * 18 17 15 36 36 H 1.09003 * 113.47151 * 92.37675 * 18 17 15 37 37 H 1.08999 * 114.20584 * 87.51845 * 19 18 17 38 38 H 1.08993 * 114.21026 * 220.34353 * 19 18 17 39 39 H 1.08998 * 109.47322 * 79.50494 * 21 20 17 40 40 H 1.09008 * 109.46999 * 199.50532 * 21 20 17 41 41 H 1.08996 * 109.47315 * 319.50128 * 21 20 17 42 42 H 1.09001 * 109.46909 * 40.49914 * 22 20 17 43 43 H 1.09000 * 109.46970 * 160.49924 * 22 20 17 44 44 H 1.08998 * 109.47292 * 280.49342 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2489 0.3994 -5.2572 10 1 2.2273 1.4411 -5.6608 11 1 1.0843 -0.5794 -6.3617 12 1 -0.0593 1.0369 -4.9616 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5767 -1.4794 3.7810 17 7 1.4280 0.1442 4.7699 18 6 0.5934 1.3234 5.0453 19 6 1.3429 1.4758 6.3762 20 6 1.5567 -0.0365 6.2237 21 6 0.4327 -0.8754 6.8353 22 6 2.9471 -0.5036 6.6589 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 -1.2495 30 1 1.6766 -1.7489 -1.2493 31 1 2.8616 -1.8822 -4.7336 32 1 3.1299 -0.7208 1.2494 33 1 1.6766 -1.7489 1.2492 34 1 0.9942 0.7583 2.3564 35 1 0.7653 2.1480 4.3535 36 1 -0.4639 1.0881 5.1671 37 1 2.2572 2.0654 6.3092 38 1 0.7082 1.7550 7.2172 39 1 0.6312 -1.9326 6.6590 40 1 0.3828 -0.6891 7.9081 41 1 -0.5165 -0.6022 6.3746 42 1 3.7052 0.0222 6.0784 43 1 3.0873 -0.2892 7.7184 44 1 3.0394 -1.5765 6.4901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565324673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -12.829704 kcal Electronic energy + Delta-G solvation = -21293.720255 eV Core-core repulsion = 18246.867421 eV Total energy + Delta-G solvation = -3046.852834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.85066 -38.61054 -36.81737 -33.54577 -32.23146 -31.32426 -29.38961 -27.64299 -27.04914 -26.48785 -25.87468 -23.25002 -23.01339 -21.40033 -19.24267 -17.85817 -17.03574 -16.34879 -15.99843 -15.90721 -14.83049 -14.65397 -14.37433 -14.24770 -13.70510 -13.51307 -13.07683 -12.78182 -12.73473 -12.58960 -12.30769 -12.10727 -12.05282 -11.84879 -11.79399 -11.43921 -11.11921 -10.99756 -10.83937 -10.61778 -10.55437 -10.36437 -10.23028 -9.85116 -9.83068 -9.17484 -8.90791 -8.86489 -8.39237 -8.34303 -5.98393 -3.99645 2.56763 3.31737 3.38670 3.40461 3.46301 3.99703 4.20219 4.46659 4.67217 4.78003 4.81708 5.01191 5.17897 5.29837 5.37073 5.41558 5.46644 5.52125 5.60389 5.67417 5.70663 5.75645 5.78140 5.89373 6.06770 6.20624 6.21779 6.27174 6.34597 6.44558 6.64017 6.65020 6.86478 7.08988 7.09675 7.16815 7.41868 7.66429 7.79054 8.00459 8.27234 8.42498 8.88676 9.05179 9.63277 11.13121 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043063 B = 0.003633 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.059042 B = 7706.280722 C = 7970.554597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.148 3.852 14 N -0.735 5.735 15 C 0.730 3.270 16 O -0.589 6.589 17 N -0.662 5.662 18 C 0.097 3.903 19 C -0.147 4.147 20 C 0.173 3.827 21 C -0.150 4.150 22 C -0.145 4.145 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 7.323 21.099 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.182 4.182 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.024 3.976 14 N -0.390 5.390 15 C 0.433 3.567 16 O -0.468 6.468 17 N -0.404 5.404 18 C -0.026 4.026 19 C -0.185 4.185 20 C 0.088 3.912 21 C -0.208 4.208 22 C -0.203 4.203 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.227 0.773 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.390 6.326 20.788 22.168 hybrid contribution -0.628 0.726 -1.117 1.473 sum -5.018 7.053 19.671 21.491 Atomic orbital electron populations 1.21742 0.95334 1.01114 1.00063 1.20913 0.95449 0.95864 0.95050 1.21744 1.00525 0.95924 1.00057 1.19088 0.96380 0.95240 0.89410 1.21185 1.31163 1.12034 0.90526 0.92276 1.25018 0.95345 0.95079 0.99073 1.69971 1.36986 1.23009 1.23417 0.86646 0.79164 0.79409 0.83073 1.20783 1.21343 1.19958 1.21485 0.98617 0.95598 0.81868 1.45332 1.56126 1.33240 1.04273 1.15387 0.80245 0.81768 0.79319 1.90904 1.43331 1.27149 1.85367 1.49010 1.54563 1.31833 1.04944 1.22862 0.95647 0.88186 0.95950 1.23520 1.01527 0.95763 0.97689 1.21754 0.96281 0.94515 0.78659 1.21984 0.97591 1.00625 1.00640 1.21886 0.94997 1.02809 1.00600 0.95408 0.91489 0.93393 0.93379 0.91497 0.95409 0.96310 0.96306 0.93047 0.92098 0.92095 0.77300 0.90751 0.90171 0.88714 0.89412 0.91696 0.91029 0.91971 0.92016 0.91739 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 2 C -0.07 -1.42 0.54 -154.51 -0.08 -1.50 16 3 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 5 C -0.51 -13.70 7.65 -34.44 -0.26 -13.97 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.15 2.79 4.56 -4.05 -0.02 2.77 16 14 N -0.73 -11.85 4.96 -65.23 -0.32 -12.18 16 15 C 0.73 12.45 8.70 -86.93 -0.76 11.70 16 16 O -0.59 -12.43 16.55 5.29 0.09 -12.34 16 17 N -0.66 -8.45 3.37 -175.66 -0.59 -9.04 16 18 C 0.10 0.82 7.91 -8.51 -0.07 0.76 16 19 C -0.15 -1.04 7.62 -26.21 -0.20 -1.24 16 20 C 0.17 1.74 1.59 -136.29 -0.22 1.52 16 21 C -0.15 -1.28 9.26 37.16 0.34 -0.93 16 22 C -0.15 -1.55 8.72 37.16 0.32 -1.22 16 23 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 24 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 28 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.39 5.48 5.88 -40.82 -0.24 5.24 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16 37 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.09 0.42 8.11 -51.93 -0.42 -0.01 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.06 0.50 7.04 -51.93 -0.37 0.14 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -32.38 346.27 -8.18 -40.56 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.73 Total: 1.19 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.55 Total: -3.78 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.18 Total: -47.14 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.38 -8.18 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565324673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.729 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds