Wall clock time and date at job start Mon Mar 30 2020 01:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 C 1.53005 * 109.47143 * 240.00253 * 2 1 3 5 5 C 1.50699 * 109.47000 * 59.99518 * 4 2 1 6 6 H 1.07994 * 120.00321 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99730 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99642 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99977 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46729 * 90.00475 * 9 7 5 11 11 H 1.48495 * 109.47205 * 210.00224 * 9 7 5 12 12 H 1.48499 * 109.47274 * 330.00465 * 9 7 5 13 13 C 1.52993 * 109.47073 * 119.99900 * 2 1 3 14 14 N 1.46498 * 109.47540 * 300.00066 * 13 2 1 15 15 C 1.34771 * 120.00530 * 180.02562 * 14 13 2 16 16 O 1.21592 * 119.99810 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00552 * 180.02562 * 15 14 13 18 18 C 1.47066 * 136.05267 * 359.97438 * 17 15 14 19 19 C 1.53503 * 87.98596 * 207.15281 * 18 17 15 20 20 C 1.47060 * 136.06153 * 180.02562 * 17 15 14 21 21 C 1.53002 * 113.46780 * 267.62546 * 20 17 15 22 22 C 1.53001 * 113.46708 * 38.00420 * 20 17 15 23 23 H 1.09000 * 109.47715 * 299.99960 * 1 2 3 24 24 H 1.09004 * 109.47361 * 60.00111 * 1 2 3 25 25 H 1.09001 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46960 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47044 * 300.00083 * 3 2 1 28 28 H 1.09003 * 109.47448 * 60.00092 * 3 2 1 29 29 H 1.09000 * 109.47181 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.46615 * 299.99837 * 4 2 1 31 31 H 0.96997 * 119.99456 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46932 * 180.02562 * 13 2 1 33 33 H 1.09004 * 109.47364 * 60.00259 * 13 2 1 34 34 H 0.97004 * 119.99708 * 359.97438 * 14 13 2 35 35 H 1.09000 * 113.46827 * 321.92886 * 18 17 15 36 36 H 1.09003 * 113.47151 * 92.37675 * 18 17 15 37 37 H 1.08999 * 114.20584 * 87.51845 * 19 18 17 38 38 H 1.08993 * 114.21026 * 220.34353 * 19 18 17 39 39 H 1.08998 * 109.47322 * 79.50494 * 21 20 17 40 40 H 1.09008 * 109.46999 * 199.50532 * 21 20 17 41 41 H 1.08996 * 109.47315 * 319.50128 * 21 20 17 42 42 H 1.09001 * 109.46909 * 40.49914 * 22 20 17 43 43 H 1.09000 * 109.46970 * 160.49924 * 22 20 17 44 44 H 1.08998 * 109.47292 * 280.49342 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2489 0.3994 -5.2572 10 1 2.2273 1.4411 -5.6608 11 1 1.0843 -0.5794 -6.3617 12 1 -0.0593 1.0369 -4.9616 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5767 -1.4794 3.7810 17 7 1.4280 0.1442 4.7699 18 6 0.5934 1.3234 5.0453 19 6 1.3429 1.4758 6.3762 20 6 1.5567 -0.0365 6.2237 21 6 0.4327 -0.8754 6.8353 22 6 2.9471 -0.5036 6.6589 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 -1.2495 30 1 1.6766 -1.7489 -1.2493 31 1 2.8616 -1.8822 -4.7336 32 1 3.1299 -0.7208 1.2494 33 1 1.6766 -1.7489 1.2492 34 1 0.9942 0.7583 2.3564 35 1 0.7653 2.1480 4.3535 36 1 -0.4639 1.0881 5.1671 37 1 2.2572 2.0654 6.3092 38 1 0.7082 1.7550 7.2172 39 1 0.6312 -1.9326 6.6590 40 1 0.3828 -0.6891 7.9081 41 1 -0.5165 -0.6022 6.3746 42 1 3.7052 0.0222 6.0784 43 1 3.0873 -0.2892 7.7184 44 1 3.0394 -1.5765 6.4901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565324673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:27 Heat of formation + Delta-G solvation = -33.551365 kcal Electronic energy + Delta-G solvation = -21294.618813 eV Core-core repulsion = 18246.867421 eV Total energy + Delta-G solvation = -3047.751392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80085 -39.90936 -38.37142 -35.23297 -34.02426 -32.32590 -30.33622 -29.01944 -28.36972 -27.98656 -27.36208 -24.89612 -23.93521 -22.58342 -20.57186 -19.37224 -18.37598 -18.02986 -17.16572 -16.89348 -16.49568 -15.96365 -15.63837 -15.52543 -15.09639 -14.76925 -14.46693 -14.34409 -13.95325 -13.87224 -13.50593 -13.24325 -13.04951 -12.87715 -12.72436 -12.69217 -12.60946 -12.52303 -12.35779 -12.23749 -12.13420 -11.98124 -11.55879 -11.33882 -11.16211 -10.95317 -10.85600 -10.51633 -10.21318 -9.47395 -8.13969 -6.22260 1.42570 1.43549 1.49695 1.54179 2.17905 2.44328 2.99018 3.20398 3.44366 3.93710 3.98606 4.02335 4.06552 4.10330 4.20608 4.33005 4.52403 4.64919 4.67194 4.70370 4.72909 4.74797 4.87885 4.90616 4.93877 4.99532 5.08742 5.09974 5.13790 5.15912 5.29976 5.38581 5.46842 5.47826 5.48009 5.52037 5.58466 5.78572 5.89094 6.28739 6.33627 6.92536 7.10542 7.45545 7.62055 8.98803 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043063 B = 0.003633 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.059042 B = 7706.280722 C = 7970.554597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.063 4.063 3 C -0.118 4.118 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.163 3.837 14 N -0.723 5.723 15 C 0.721 3.279 16 O -0.642 6.642 17 N -0.669 5.669 18 C 0.092 3.908 19 C -0.123 4.123 20 C 0.157 3.843 21 C -0.145 4.145 22 C -0.143 4.143 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.066 0.934 29 H -0.015 1.015 30 H -0.015 1.015 31 H 0.260 0.740 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.407 0.593 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.037 0.963 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 10.546 22.924 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.064 4.064 3 C -0.176 4.176 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.038 3.962 14 N -0.379 5.379 15 C 0.424 3.576 16 O -0.525 6.525 17 N -0.409 5.409 18 C -0.029 4.029 19 C -0.161 4.161 20 C 0.072 3.928 21 C -0.203 4.203 22 C -0.201 4.201 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.244 0.756 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.143 0.857 39 H 0.056 0.944 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.115 0.885 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.775 9.618 22.666 25.537 hybrid contribution 0.126 -0.303 -1.564 1.598 sum -6.649 9.316 21.101 24.005 Atomic orbital electron populations 1.21660 0.93496 1.00867 1.01525 1.20712 0.96779 0.96356 0.92554 1.21664 0.99817 0.94535 1.01548 1.18965 0.94244 0.94192 0.92317 1.21584 1.30507 1.12106 0.90971 0.90774 1.25982 0.95645 0.95849 1.02812 1.70135 1.38811 1.25011 1.24118 0.85505 0.79222 0.78076 0.78604 1.20108 1.21592 1.18197 1.21040 0.97244 0.94846 0.83053 1.44978 1.56240 1.33410 1.03306 1.15618 0.80167 0.81498 0.80301 1.90863 1.45692 1.29633 1.86283 1.49230 1.54274 1.32535 1.04865 1.23240 0.96330 0.86532 0.96834 1.23469 1.01934 0.92599 0.98113 1.22228 0.96182 0.97335 0.77016 1.21972 0.97108 0.98654 1.02595 1.21872 0.95362 1.00474 1.02352 0.91500 0.92303 0.94580 0.94571 0.92265 0.91495 0.99667 0.99658 0.93164 0.94247 0.94243 0.75636 0.89555 0.88027 0.88606 0.85686 0.94366 0.87908 0.91124 0.94094 0.88512 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 2 C -0.06 -2.50 0.54 -52.18 -0.03 -2.53 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.51 -27.88 7.65 25.60 0.20 -27.68 16 6 H 0.07 3.74 5.68 -2.91 -0.02 3.72 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.12 16 8 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 9 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.16 6.37 4.56 86.38 0.39 6.76 16 14 N -0.72 -22.80 4.96 -478.55 -2.37 -25.18 16 15 C 0.72 24.65 8.70 179.06 1.56 26.21 16 16 O -0.64 -28.41 16.55 -4.00 -0.07 -28.47 16 17 N -0.67 -15.94 3.37 -827.91 -2.79 -18.73 16 18 C 0.09 1.19 7.91 83.18 0.66 1.84 16 19 C -0.12 -1.19 7.62 30.93 0.24 -0.96 16 20 C 0.16 2.79 1.59 0.40 0.00 2.79 16 21 C -0.15 -2.10 9.26 71.98 0.67 -1.44 16 22 C -0.14 -2.97 8.72 71.98 0.63 -2.35 16 23 H 0.07 1.79 6.86 -2.39 -0.02 1.78 16 24 H 0.06 2.15 6.62 -2.39 -0.02 2.14 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 28 H 0.07 1.79 6.86 -2.39 -0.02 1.77 16 29 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.41 10.20 5.88 -92.71 -0.54 9.66 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.94 7.30 -2.39 -0.02 0.92 16 37 H 0.10 0.97 8.12 -2.39 -0.02 0.95 16 38 H 0.13 0.40 8.11 -2.39 -0.02 0.38 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.07 0.91 7.04 -2.39 -0.02 0.89 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -75.56 346.27 3.55 -72.02 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.42 Total: 14.22 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.05 Total: -2.07 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.88 Total: -101.57 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.07 Total: -28.47 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -75.56 3.55 -72.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565324673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.465 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds