Wall clock time and date at job start Mon Mar 30 2020 01:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46896 * 2 1 4 4 C 1.52996 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46972 * 300.00085 * 4 3 2 6 6 N 1.46499 * 109.46799 * 300.00013 * 5 4 3 7 7 C 1.34781 * 119.99874 * 205.00309 * 6 5 4 8 8 O 1.21278 * 120.00033 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00101 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.46902 * 320.00088 * 9 7 6 11 11 N 1.46896 * 109.47041 * 199.99841 * 9 7 6 12 12 C 1.53006 * 109.46994 * 79.99671 * 9 7 6 13 13 C 1.52998 * 109.46963 * 185.00052 * 12 9 7 14 14 C 1.50695 * 109.47226 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00037 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99771 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00211 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47001 * 90.00333 * 18 16 14 20 20 H 1.48500 * 109.46854 * 210.00362 * 18 16 14 21 21 H 1.48498 * 109.46822 * 330.00103 * 18 16 14 22 22 C 1.53000 * 109.47233 * 59.99538 * 5 4 3 23 23 C 1.52993 * 109.47469 * 119.99597 * 2 1 3 24 24 H 1.09001 * 109.47364 * 60.00592 * 1 2 3 25 25 H 1.09004 * 109.46785 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47346 * 299.99713 * 1 2 3 27 27 H 1.09004 * 109.47694 * 240.00007 * 2 1 3 28 28 H 1.09004 * 109.46943 * 59.99548 * 3 2 1 29 29 H 1.09001 * 109.46630 * 299.99857 * 3 2 1 30 30 H 1.08996 * 109.47452 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47054 * 59.99785 * 4 3 2 32 32 H 1.09002 * 109.47070 * 179.97438 * 5 4 3 33 33 H 0.97002 * 120.00410 * 24.99527 * 6 5 4 34 34 H 1.00900 * 111.00091 * 299.99234 * 11 9 7 35 35 H 1.00898 * 111.00043 * 63.95711 * 11 9 7 36 36 H 1.08994 * 109.46916 * 305.00128 * 12 9 7 37 37 H 1.09003 * 109.46759 * 65.00028 * 12 9 7 38 38 H 1.09006 * 109.47395 * 300.00209 * 13 12 9 39 39 H 1.09000 * 109.47260 * 59.99874 * 13 12 9 40 40 H 0.97002 * 119.99785 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46724 * 60.00652 * 22 5 4 42 42 H 1.09001 * 109.47194 * 179.97438 * 22 5 4 43 43 H 1.09000 * 109.47250 * 300.00382 * 23 2 1 44 44 H 1.09004 * 109.46862 * 60.00359 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0805 0.7213 1.2483 6 7 3.5925 1.4117 2.4447 7 6 4.2698 1.3089 3.6054 8 8 5.2830 0.6445 3.6595 9 6 3.7682 2.0196 4.8361 10 1 3.3965 3.0062 4.5597 11 7 4.8668 2.1627 5.8008 12 6 2.6365 1.2070 5.4686 13 6 2.0440 1.9870 6.6439 14 6 0.9290 1.1870 7.2665 15 1 0.6692 0.2189 6.8645 16 6 0.2411 1.6905 8.3502 17 7 0.5577 2.8692 8.8402 18 14 -1.1406 0.6985 9.1224 19 1 -0.5880 -0.1707 10.1921 20 1 -2.1469 1.6219 9.7054 21 1 -1.7854 -0.1442 8.0835 22 6 3.5705 -0.7212 1.2483 23 6 2.0400 -0.7211 1.2492 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9332 2.4704 -0.0011 31 1 3.9329 0.9290 -0.8908 32 1 5.1705 0.7210 1.2476 33 1 2.7821 1.9430 2.4016 34 1 5.2288 1.2611 6.0729 35 1 5.5991 2.7497 5.4304 36 1 1.8606 1.0250 4.7252 37 1 3.0286 0.2545 5.8253 38 1 2.8201 2.1691 7.3874 39 1 1.6520 2.9394 6.2872 40 1 0.0735 3.2235 9.6023 41 1 3.9336 -1.2349 0.3581 42 1 3.9346 -1.2353 2.1379 43 1 1.6767 -0.2073 2.1392 44 1 1.6767 -1.7488 1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570958949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:36 Heat of formation + Delta-G solvation = -80.479654 kcal Electronic energy + Delta-G solvation = -21367.254326 eV Core-core repulsion = 18317.467970 eV Total energy + Delta-G solvation = -3049.786356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30779 -38.45680 -35.19058 -34.31098 -32.77998 -31.22238 -30.97331 -30.05937 -26.83794 -25.87280 -23.67763 -22.83582 -21.35867 -20.88299 -19.86347 -19.15057 -17.28803 -16.27881 -16.01031 -15.44178 -15.37511 -14.77819 -14.44587 -14.36463 -14.15243 -13.82905 -13.48888 -13.24216 -13.03562 -12.41443 -12.30355 -12.09201 -11.98480 -11.71795 -11.63954 -11.50427 -11.31345 -10.89234 -10.66077 -10.64144 -10.53398 -10.36426 -10.18983 -10.06531 -9.77928 -9.34954 -8.99146 -8.94078 -8.32635 -8.17367 -5.92944 -3.95001 2.84648 3.35332 3.35921 3.41611 3.44438 4.48468 4.50901 4.54068 4.56166 4.88919 4.93871 5.03660 5.12319 5.22310 5.30496 5.34368 5.39366 5.42661 5.47094 5.56180 5.57589 5.68032 5.77649 5.86501 5.88945 5.91517 5.96142 6.09878 6.11552 6.22253 6.32610 6.46099 6.60711 6.68629 7.10835 7.42664 7.67581 7.77382 7.83105 7.97563 8.14457 8.40063 8.49691 9.13069 9.68122 11.17986 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.004846 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.015355 B = 5776.097846 C = 6865.558485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.126 4.126 5 C 0.144 3.856 6 N -0.723 5.723 7 C 0.483 3.517 8 O -0.556 6.556 9 C 0.077 3.923 10 H 0.096 0.904 11 N -0.807 5.807 12 C -0.094 4.094 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.051 0.949 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.129 4.129 23 C -0.115 4.115 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.400 0.600 34 H 0.347 0.653 35 H 0.333 0.667 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -2.742 -19.986 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.155 4.155 4 C -0.164 4.164 5 C 0.039 3.961 6 N -0.376 5.376 7 C 0.269 3.731 8 O -0.434 6.434 9 C -0.039 4.039 10 H 0.114 0.886 11 N -0.335 5.335 12 C -0.132 4.132 13 C -0.006 4.006 14 C -0.560 4.560 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.168 4.168 23 C -0.153 4.153 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.236 0.764 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.227 -2.746 -19.312 19.959 hybrid contribution -0.615 -0.774 -0.351 1.049 sum 3.612 -3.520 -19.663 20.299 Atomic orbital electron populations 1.21843 0.95171 1.01766 1.01891 1.21137 0.95521 0.95805 0.98454 1.21616 0.94963 0.96763 1.02108 1.21814 0.96304 1.00894 0.97378 1.20880 0.99125 0.91695 0.84422 1.46290 1.29339 1.52302 1.09657 1.22708 0.83539 0.81065 0.85784 1.90630 1.25724 1.41796 1.85242 1.21830 0.94837 0.99913 0.87271 0.88629 1.58994 1.13498 1.20078 1.40929 1.21635 0.93411 0.98488 0.99657 1.19014 0.95368 0.94392 0.91820 1.21277 1.16963 1.03760 1.14005 0.93029 1.24985 0.97347 0.94985 0.96966 1.69978 1.41314 1.17318 1.24595 0.86661 0.82160 0.79987 0.79566 1.20717 1.21292 1.20026 1.21904 0.96120 0.96429 1.02320 1.21588 0.95143 1.00461 0.98096 0.92894 0.92759 0.92291 0.91456 0.91758 0.91706 0.91383 0.90689 0.89936 0.76392 0.83876 0.85526 0.92947 0.92929 0.94693 0.96921 0.93118 0.91543 0.91390 0.91317 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.09 -0.78 2.72 -90.62 -0.25 -1.03 16 3 C -0.12 -0.95 5.03 -26.73 -0.13 -1.09 16 4 C -0.13 -1.04 5.61 -26.73 -0.15 -1.19 16 5 C 0.14 1.58 2.78 -67.93 -0.19 1.39 16 6 N -0.72 -8.95 4.23 -53.80 -0.23 -9.17 16 7 C 0.48 7.57 7.03 -10.98 -0.08 7.49 16 8 O -0.56 -10.21 15.91 5.56 0.09 -10.12 16 9 C 0.08 1.30 3.15 -68.86 -0.22 1.09 16 10 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 11 N -0.81 -13.79 8.44 -5.65 -0.05 -13.84 16 12 C -0.09 -1.89 4.78 -26.73 -0.13 -2.02 16 13 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 14 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.13 -1.43 5.60 -26.71 -0.15 -1.58 16 23 C -0.12 -1.21 5.05 -26.71 -0.13 -1.34 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.03 7.58 -51.93 -0.39 0.64 16 33 H 0.40 4.43 6.87 -40.82 -0.28 4.15 16 34 H 0.35 6.04 8.58 -39.29 -0.34 5.71 16 35 H 0.33 4.95 9.06 -39.29 -0.36 4.59 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.84 7.61 -51.93 -0.39 0.44 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -31.64 347.10 -8.83 -40.47 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.96 Total: 8.96 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.63 Total: -12.06 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.46 Total: -49.25 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.64 -8.83 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570958949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.006 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds