Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46896 * 2 1 4 4 C 1.52996 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46972 * 300.00085 * 4 3 2 6 6 N 1.46499 * 109.46799 * 300.00013 * 5 4 3 7 7 C 1.34781 * 119.99874 * 205.00309 * 6 5 4 8 8 O 1.21278 * 120.00033 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00101 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.46902 * 320.00088 * 9 7 6 11 11 N 1.46896 * 109.47041 * 199.99841 * 9 7 6 12 12 C 1.53006 * 109.46994 * 79.99671 * 9 7 6 13 13 C 1.52998 * 109.46963 * 185.00052 * 12 9 7 14 14 C 1.50695 * 109.47226 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00037 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99771 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00211 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47001 * 90.00333 * 18 16 14 20 20 H 1.48500 * 109.46854 * 210.00362 * 18 16 14 21 21 H 1.48498 * 109.46822 * 330.00103 * 18 16 14 22 22 C 1.53000 * 109.47233 * 59.99538 * 5 4 3 23 23 C 1.52993 * 109.47469 * 119.99597 * 2 1 3 24 24 H 1.09001 * 109.47364 * 60.00592 * 1 2 3 25 25 H 1.09004 * 109.46785 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47346 * 299.99713 * 1 2 3 27 27 H 1.09004 * 109.47694 * 240.00007 * 2 1 3 28 28 H 1.09004 * 109.46943 * 59.99548 * 3 2 1 29 29 H 1.09001 * 109.46630 * 299.99857 * 3 2 1 30 30 H 1.08996 * 109.47452 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47054 * 59.99785 * 4 3 2 32 32 H 1.09002 * 109.47070 * 179.97438 * 5 4 3 33 33 H 0.97002 * 120.00410 * 24.99527 * 6 5 4 34 34 H 1.00900 * 111.00091 * 299.99234 * 11 9 7 35 35 H 1.00898 * 111.00043 * 63.95711 * 11 9 7 36 36 H 1.08994 * 109.46916 * 305.00128 * 12 9 7 37 37 H 1.09003 * 109.46759 * 65.00028 * 12 9 7 38 38 H 1.09006 * 109.47395 * 300.00209 * 13 12 9 39 39 H 1.09000 * 109.47260 * 59.99874 * 13 12 9 40 40 H 0.97002 * 119.99785 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46724 * 60.00652 * 22 5 4 42 42 H 1.09001 * 109.47194 * 179.97438 * 22 5 4 43 43 H 1.09000 * 109.47250 * 300.00382 * 23 2 1 44 44 H 1.09004 * 109.46862 * 60.00359 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0805 0.7213 1.2483 6 7 3.5925 1.4117 2.4447 7 6 4.2698 1.3089 3.6054 8 8 5.2830 0.6445 3.6595 9 6 3.7682 2.0196 4.8361 10 1 3.3965 3.0062 4.5597 11 7 4.8668 2.1627 5.8008 12 6 2.6365 1.2070 5.4686 13 6 2.0440 1.9870 6.6439 14 6 0.9290 1.1870 7.2665 15 1 0.6692 0.2189 6.8645 16 6 0.2411 1.6905 8.3502 17 7 0.5577 2.8692 8.8402 18 14 -1.1406 0.6985 9.1224 19 1 -0.5880 -0.1707 10.1921 20 1 -2.1469 1.6219 9.7054 21 1 -1.7854 -0.1442 8.0835 22 6 3.5705 -0.7212 1.2483 23 6 2.0400 -0.7211 1.2492 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9332 2.4704 -0.0011 31 1 3.9329 0.9290 -0.8908 32 1 5.1705 0.7210 1.2476 33 1 2.7821 1.9430 2.4016 34 1 5.2288 1.2611 6.0729 35 1 5.5991 2.7497 5.4304 36 1 1.8606 1.0250 4.7252 37 1 3.0286 0.2545 5.8253 38 1 2.8201 2.1691 7.3874 39 1 1.6520 2.9394 6.2872 40 1 0.0735 3.2235 9.6023 41 1 3.9336 -1.2349 0.3581 42 1 3.9346 -1.2353 2.1379 43 1 1.6767 -0.2073 2.1392 44 1 1.6767 -1.7488 1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570958949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = -101.498672 kcal Electronic energy + Delta-G solvation = -21368.165779 eV Core-core repulsion = 18317.467970 eV Total energy + Delta-G solvation = -3050.697809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41647 -39.47792 -36.78249 -35.31272 -34.80543 -32.15979 -31.91677 -31.73415 -28.27140 -27.04504 -25.35415 -23.60832 -22.64106 -22.03599 -21.29085 -20.06382 -18.75451 -18.09588 -17.29969 -16.74793 -16.45960 -16.36013 -15.84014 -15.33051 -15.18788 -14.92057 -14.77545 -14.28665 -14.19422 -13.87757 -13.75990 -13.41461 -13.19671 -12.89437 -12.81067 -12.51749 -12.43034 -12.37191 -12.23747 -12.07444 -11.75631 -11.63502 -11.40483 -11.24283 -11.11517 -10.98983 -10.96806 -10.48972 -10.02431 -9.60146 -8.13808 -6.24068 1.41472 1.42796 1.52817 1.55914 2.24818 2.44705 3.19274 3.58173 3.70878 3.79121 3.82076 3.90435 4.11019 4.17030 4.23292 4.32554 4.48120 4.49574 4.56848 4.64151 4.71423 4.77528 4.87400 4.93095 5.00380 5.04899 5.12531 5.14492 5.22084 5.26009 5.28834 5.39253 5.45393 5.56461 5.57381 5.61640 5.84317 5.98535 6.10700 6.30569 6.48165 6.56200 6.94368 7.19886 7.44059 8.97470 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.004846 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.015355 B = 5776.097846 C = 6865.558485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.116 4.116 4 C -0.117 4.117 5 C 0.141 3.859 6 N -0.708 5.708 7 C 0.489 3.511 8 O -0.583 6.583 9 C 0.084 3.916 10 H 0.108 0.892 11 N -0.819 5.819 12 C -0.079 4.079 13 C 0.040 3.960 14 C -0.543 4.543 15 H 0.054 0.946 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.264 1.264 22 C -0.125 4.125 23 C -0.114 4.114 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.409 0.591 34 H 0.344 0.656 35 H 0.346 0.654 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.005 0.995 39 H -0.006 1.006 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.036 0.964 43 H 0.047 0.953 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -3.117 -21.964 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.154 4.154 4 C -0.154 4.154 5 C 0.037 3.963 6 N -0.360 5.360 7 C 0.274 3.726 8 O -0.464 6.464 9 C -0.032 4.032 10 H 0.126 0.874 11 N -0.348 5.348 12 C -0.117 4.117 13 C 0.003 3.997 14 C -0.582 4.582 15 H 0.072 0.928 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.164 4.164 23 C -0.151 4.151 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.246 0.754 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.024 0.976 39 H 0.013 0.987 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.363 -3.113 -21.329 21.815 hybrid contribution -0.338 -0.653 0.249 0.776 sum 3.025 -3.766 -21.080 21.626 Atomic orbital electron populations 1.21838 0.95101 1.01774 1.01929 1.21109 0.95520 0.96053 0.97710 1.21632 0.94708 0.96400 1.02643 1.21779 0.96344 1.01104 0.96221 1.21035 0.98454 0.91989 0.84855 1.46212 1.28943 1.51580 1.09290 1.22287 0.83394 0.80663 0.86253 1.90623 1.27060 1.42984 1.85728 1.21631 0.93805 1.00013 0.87736 0.87419 1.58967 1.14085 1.20220 1.41505 1.21351 0.94730 0.97468 0.98159 1.18821 0.94057 0.94006 0.92843 1.21716 1.17777 1.04143 1.14516 0.92761 1.25882 1.00016 0.96043 0.97518 1.70107 1.42684 1.19009 1.25180 0.85552 0.78869 0.78515 0.78727 1.20183 1.20651 1.18830 1.21863 0.96510 0.96277 1.01747 1.21566 0.94620 1.00532 0.98411 0.91555 0.92830 0.93532 0.90085 0.92502 0.89921 0.90649 0.88828 0.91296 0.75386 0.84230 0.84062 0.91739 0.94183 0.97649 0.98739 0.92919 0.89543 0.94557 0.93380 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.19 71.98 0.66 -1.59 16 2 C -0.09 -1.27 2.72 -10.79 -0.03 -1.30 16 3 C -0.12 -1.55 5.03 30.60 0.15 -1.40 16 4 C -0.12 -1.59 5.61 30.59 0.17 -1.42 16 5 C 0.14 2.89 2.78 44.99 0.13 3.02 16 6 N -0.71 -16.86 4.23 -442.52 -1.87 -18.73 16 7 C 0.49 15.17 7.03 87.66 0.62 15.79 16 8 O -0.58 -21.49 15.91 -3.02 -0.05 -21.54 16 9 C 0.08 2.83 3.15 44.17 0.14 2.97 16 10 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 11 N -0.82 -28.32 8.44 -171.80 -1.45 -29.77 16 12 C -0.08 -3.22 4.78 30.60 0.15 -3.08 16 13 C 0.04 2.09 4.86 29.85 0.15 2.24 16 14 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 15 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 18 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 C -0.13 -2.64 5.60 30.61 0.17 -2.47 16 23 C -0.11 -2.25 5.05 30.61 0.15 -2.10 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.85 6.51 -2.39 -0.02 0.84 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 33 H 0.41 8.48 6.87 -92.71 -0.64 7.85 16 34 H 0.34 12.25 8.58 -89.69 -0.77 11.48 16 35 H 0.35 10.27 9.06 -89.70 -0.81 9.46 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.01 0.29 7.75 -2.38 -0.02 0.28 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 1.14 7.61 -2.39 -0.02 1.12 16 44 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -68.45 347.10 0.86 -67.59 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -1.23 Total: 31.95 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 3.15 Total: -19.54 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -3.04 Total: -105.13 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.45 0.86 -67.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570958949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.905 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds