Wall clock time and date at job start Mon Mar 30 2020 01:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47458 * 2 1 4 4 C 1.53000 * 109.47085 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47104 * 299.99889 * 4 3 2 6 6 N 1.46499 * 109.46833 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99893 * 155.00334 * 6 5 4 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 6 5 10 10 H 1.08998 * 109.47795 * 39.99930 * 9 7 6 11 11 N 1.46899 * 109.46885 * 160.00203 * 9 7 6 12 12 C 1.53001 * 109.46917 * 279.99599 * 9 7 6 13 13 C 1.52998 * 109.47003 * 175.00627 * 12 9 7 14 14 C 1.50703 * 109.47038 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00291 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00183 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00158 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46771 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47348 * 119.99983 * 18 16 14 21 21 H 1.48505 * 109.47061 * 240.00306 * 18 16 14 22 22 C 1.52998 * 109.47053 * 60.00471 * 5 4 3 23 23 C 1.53000 * 109.47154 * 299.99761 * 22 5 4 24 24 H 1.09006 * 109.46987 * 59.99734 * 1 2 3 25 25 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46870 * 300.00256 * 1 2 3 27 27 H 1.09007 * 109.46865 * 240.00177 * 2 1 3 28 28 H 1.08997 * 109.46559 * 59.99875 * 3 2 1 29 29 H 1.09005 * 109.47082 * 300.00640 * 3 2 1 30 30 H 1.09002 * 109.46726 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.46824 * 60.00579 * 4 3 2 32 32 H 1.08990 * 109.47430 * 300.00262 * 5 4 3 33 33 H 0.97005 * 120.00261 * 335.00546 * 6 5 4 34 34 H 1.00903 * 110.99825 * 296.03913 * 11 9 7 35 35 H 1.00896 * 111.00735 * 59.99680 * 11 9 7 36 36 H 1.09004 * 109.47248 * 295.00243 * 12 9 7 37 37 H 1.09003 * 109.47165 * 55.00053 * 12 9 7 38 38 H 1.08999 * 109.46903 * 299.99449 * 13 12 9 39 39 H 1.08990 * 109.47625 * 60.00034 * 13 12 9 40 40 H 0.96996 * 120.00040 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.47248 * 59.99543 * 22 5 4 42 42 H 1.08997 * 109.47450 * 179.97438 * 22 5 4 43 43 H 1.09002 * 109.47232 * 300.00298 * 23 22 5 44 44 H 1.09002 * 109.47099 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0806 0.7210 1.2483 6 7 5.5455 0.7204 1.2473 7 6 6.2202 0.6183 2.4097 8 8 5.6144 0.5265 3.4563 9 6 7.7271 0.6116 2.4081 10 1 8.0931 1.3348 1.6794 11 7 8.2198 0.9709 3.7446 12 6 8.2305 -0.7850 2.0375 13 6 9.7553 -0.7614 1.9141 14 6 10.2510 -2.1368 1.5485 15 1 9.5488 -2.9468 1.4177 16 6 11.6010 -2.3610 1.3810 17 7 12.4563 -1.3747 1.5407 18 14 12.2156 -4.0661 0.9285 19 1 11.0612 -4.9926 0.8086 20 1 12.9368 -4.0044 -0.3681 21 1 13.1370 -4.5566 1.9848 22 6 3.5706 -0.7215 1.2482 23 6 2.0406 -0.7215 1.2489 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.9334 2.4701 -0.0002 31 1 3.9329 0.9288 -0.8909 32 1 3.7177 1.2346 2.1384 33 1 6.0301 0.7934 0.4101 34 1 7.9549 1.9141 3.9860 35 1 7.8940 0.3149 4.4385 36 1 7.9397 -1.4936 2.8131 37 1 7.7935 -1.0881 1.0861 38 1 10.0460 -0.0528 1.1386 39 1 10.1922 -0.4584 2.8655 40 1 13.4061 -1.5326 1.4232 41 1 3.9335 -1.2352 0.3579 42 1 3.9346 -1.2357 2.1377 43 1 1.6776 -0.2078 2.1391 44 1 1.6772 -1.7492 1.2484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570958951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:38 Heat of formation + Delta-G solvation = -105.625859 kcal Electronic energy + Delta-G solvation = -20803.239342 eV Core-core repulsion = 17752.362565 eV Total energy + Delta-G solvation = -3050.876777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28485 -39.48295 -36.80328 -35.69575 -34.80838 -32.12224 -31.91134 -31.74989 -28.34688 -26.88441 -25.11429 -23.73150 -22.57507 -21.92304 -21.26286 -20.60194 -18.66064 -18.02239 -17.60580 -16.84990 -16.47745 -16.04500 -15.84335 -15.23278 -15.17556 -15.06410 -14.95632 -14.29634 -14.20400 -13.79480 -13.68664 -13.40021 -13.20712 -13.11663 -12.82432 -12.52892 -12.50476 -12.24495 -12.08982 -11.93580 -11.78401 -11.69108 -11.53250 -11.27942 -11.21620 -11.09962 -10.95298 -10.49523 -10.05661 -9.60608 -8.14109 -6.24375 1.41266 1.42235 1.52318 1.55285 2.19959 2.44610 3.18916 3.57022 3.66412 3.73773 3.82904 3.98951 4.10749 4.11496 4.21349 4.32676 4.40478 4.45996 4.54309 4.58481 4.77991 4.79842 4.83150 4.93397 4.98343 5.00471 5.10769 5.14920 5.19054 5.24134 5.26178 5.37631 5.41733 5.53261 5.57195 5.58484 5.84526 5.98649 6.10188 6.30452 6.47197 6.55493 6.94523 7.18221 7.43835 8.97344 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.003553 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.534483 B = 7878.305561 C = 8495.076004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.107 4.107 4 C -0.120 4.120 5 C 0.144 3.856 6 N -0.714 5.714 7 C 0.489 3.511 8 O -0.584 6.584 9 C 0.085 3.915 10 H 0.110 0.890 11 N -0.819 5.819 12 C -0.080 4.080 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.281 1.281 22 C -0.127 4.127 23 C -0.107 4.107 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.413 0.587 34 H 0.346 0.654 35 H 0.344 0.656 36 H 0.039 0.961 37 H 0.067 0.933 38 H -0.005 1.005 39 H 0.005 0.995 40 H 0.262 0.738 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.078 6.176 -5.847 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.145 4.145 4 C -0.158 4.158 5 C 0.039 3.961 6 N -0.365 5.365 7 C 0.274 3.726 8 O -0.464 6.464 9 C -0.031 4.031 10 H 0.128 0.872 11 N -0.348 5.348 12 C -0.118 4.118 13 C 0.002 3.998 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.207 1.207 22 C -0.166 4.166 23 C -0.146 4.146 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.013 0.987 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.594 6.050 -5.415 24.009 hybrid contribution 0.014 -0.714 0.049 0.716 sum -22.581 5.336 -5.366 23.815 Atomic orbital electron populations 1.21807 0.94331 1.01985 1.02154 1.21170 0.96157 0.95960 0.97743 1.21541 0.93543 0.96528 1.02903 1.21785 0.96984 1.00764 0.96235 1.21040 0.78933 0.96311 0.99789 1.46192 1.07516 1.73545 1.09239 1.22344 0.92121 0.74310 0.83802 1.90628 1.71152 1.51643 1.32964 1.21644 0.87022 1.00230 0.94216 0.87171 1.58975 1.65086 1.07941 1.02816 1.21370 0.97863 0.92629 0.99985 1.18827 0.90491 0.94768 0.95699 1.21763 0.92526 0.96977 1.46855 0.92687 1.25908 0.97353 1.00887 0.95503 1.70113 1.02529 1.33436 1.50950 0.85478 0.78364 0.79785 0.77870 1.18832 1.20201 1.20699 1.21878 0.96993 0.96396 1.01324 1.21533 0.93427 1.01008 0.98583 0.91722 0.92573 0.92803 0.90725 0.92063 0.89840 0.90658 0.90174 0.91777 0.75065 0.84065 0.84231 0.94182 0.91484 0.98662 0.97661 0.92915 0.91244 0.94529 0.92471 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.09 -1.21 2.72 -10.79 -0.03 -1.24 16 3 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 4 C -0.12 -1.74 5.39 30.59 0.16 -1.57 16 5 C 0.14 3.06 2.45 44.99 0.11 3.17 16 6 N -0.71 -17.02 5.08 -442.54 -2.25 -19.27 16 7 C 0.49 15.23 7.03 87.65 0.62 15.84 16 8 O -0.58 -21.72 15.92 -3.04 -0.05 -21.77 16 9 C 0.08 2.84 3.15 44.17 0.14 2.97 16 10 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 11 N -0.82 -28.30 8.44 -171.81 -1.45 -29.75 16 12 C -0.08 -3.26 4.78 30.59 0.15 -3.11 16 13 C 0.04 2.06 4.86 29.85 0.15 2.20 16 14 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 15 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 16 C 0.00 0.07 5.46 84.65 0.46 0.53 16 17 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 18 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 C -0.13 -2.78 5.49 30.59 0.17 -2.61 16 23 C -0.11 -1.86 5.21 30.59 0.16 -1.70 16 24 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 33 H 0.41 8.02 8.60 -92.70 -0.80 7.22 16 34 H 0.35 10.26 9.06 -89.69 -0.81 9.45 16 35 H 0.34 12.25 8.58 -89.70 -0.77 11.48 16 36 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.00 0.29 7.75 -2.39 -0.02 0.27 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -68.98 351.53 0.30 -68.68 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -1.40 Total: 30.54 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 3.14 Total: -18.44 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.41 Total: -105.65 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.98 0.30 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570958951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.945 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds