Wall clock time and date at job start Mon Mar 30 2020 00:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47246 * 59.99650 * 8 6 4 10 10 H 1.48493 * 109.47418 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47006 * 300.00030 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.40794 * 120.00248 * 179.97438 * 17 16 13 19 19 C 1.40222 * 126.07065 * 0.02562 * 18 17 16 20 20 N 1.30861 * 108.36675 * 179.97438 * 19 18 17 21 21 N 1.40074 * 108.36053 * 359.97438 * 20 19 18 22 22 C 1.46500 * 126.07237 * 180.02562 * 21 20 19 23 23 C 1.35707 * 126.06542 * 179.71491 * 18 17 16 24 24 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 25 25 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 26 26 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 27 27 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 28 28 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 29 29 H 0.96993 * 120.00483 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 31 31 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 32 32 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 33 33 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 34 34 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 35 35 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 36 36 H 1.07998 * 125.81300 * 359.96778 * 19 18 17 37 37 H 1.09004 * 109.46639 * 89.97494 * 22 21 20 38 38 H 1.08997 * 109.47190 * 209.97373 * 22 21 20 39 39 H 1.09001 * 109.47093 * 329.97865 * 22 21 20 40 40 H 1.08002 * 126.22469 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 2.7137 4.0012 0.6158 8 14 1.5839 4.1864 3.1387 9 1 2.1756 3.4286 4.2704 10 1 2.1159 5.5728 3.1386 11 1 0.1068 4.2236 3.2865 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1356 -3.0052 -2.7641 19 6 5.6696 -3.4059 -4.0244 20 7 6.6370 -4.0359 -4.6406 21 7 7.7552 -4.0601 -3.7974 22 6 9.0526 -4.6684 -4.1024 23 6 7.4243 -3.4143 -2.6474 24 1 -0.3633 0.5899 -0.8415 25 1 -0.3634 -1.0238 -0.0902 26 1 -0.3633 0.4336 0.9316 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 2.9882 4.9173 0.7778 30 1 1.3932 -1.6631 -1.2814 31 1 1.9552 -0.1531 -2.0381 32 1 2.9843 -2.8273 0.2042 33 1 3.4166 -2.8115 -2.2453 34 1 3.9751 -1.2717 -2.9419 35 1 5.8112 -2.0650 -0.9476 36 1 4.6807 -3.2254 -4.4193 37 1 9.6965 -3.9302 -4.5805 38 1 9.5182 -5.0132 -3.1792 39 1 8.9082 -5.5143 -4.7745 40 1 8.0693 -3.2567 -1.7956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571039633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:51 Heat of formation + Delta-G solvation = 42.292939 kcal Electronic energy + Delta-G solvation = -20072.097524 eV Core-core repulsion = 16924.094644 eV Total energy + Delta-G solvation = -3148.002880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01071 -38.16801 -35.86324 -34.73605 -32.71870 -32.47744 -30.47195 -28.73205 -27.30369 -26.47626 -25.24335 -23.49230 -22.03281 -20.92938 -20.39447 -20.00209 -17.24097 -16.55166 -16.29803 -15.67141 -15.43229 -15.29428 -14.70152 -14.55975 -14.19809 -14.04002 -13.63635 -13.41313 -13.11165 -12.93046 -12.60003 -12.40273 -12.23515 -11.92246 -11.41677 -11.14537 -10.93196 -10.82482 -10.71842 -10.64015 -10.38129 -10.00890 -9.76194 -9.65461 -9.37888 -9.15002 -8.40799 -7.21047 -7.01317 -6.00746 -4.01408 1.85599 2.45496 2.98352 3.35407 3.39113 3.42587 3.67601 4.43980 4.54734 4.70390 4.85744 4.89859 4.96638 5.09654 5.19711 5.28211 5.33822 5.43213 5.55110 5.62851 5.68411 5.75197 5.78000 6.03784 6.08129 6.35228 6.37188 6.46865 6.71853 6.97083 7.26168 7.31852 7.47510 7.65352 7.80911 8.00794 8.09445 8.11066 8.21543 8.56254 9.05639 9.62475 11.10313 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.003271 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.899283 B = 8557.772833 C = 9034.303259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.028 3.972 13 C 0.106 3.894 14 H 0.108 0.892 15 O -0.540 6.540 16 C 0.107 3.893 17 N -0.736 5.736 18 C 0.073 3.927 19 C 0.007 3.993 20 N -0.281 5.281 21 N -0.379 5.379 22 C 0.112 3.888 23 C -0.039 4.039 24 H 0.012 0.988 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.030 0.970 28 H -0.011 1.011 29 H 0.261 0.739 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.364 0.636 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.403 0.597 36 H 0.178 0.822 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -16.144 -8.219 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.102 4.102 13 C 0.045 3.955 14 H 0.125 0.875 15 O -0.343 6.343 16 C -0.019 4.019 17 N -0.375 5.375 18 C -0.035 4.035 19 C -0.181 4.181 20 N -0.105 5.105 21 N -0.168 5.168 22 C -0.030 4.030 23 C -0.186 4.186 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.007 0.993 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.210 0.790 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.239 0.761 36 H 0.195 0.805 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.595 -16.343 -8.767 20.441 hybrid contribution -0.884 1.159 0.826 1.675 sum 7.711 -15.184 -7.941 18.790 Atomic orbital electron populations 1.22193 0.88739 0.98628 1.01188 1.62029 1.06603 1.17842 1.39116 1.19784 0.95430 0.81454 0.96583 1.21112 1.34695 0.96828 1.01699 0.91944 1.24987 0.95335 0.97375 0.96977 1.69942 1.38427 1.11502 1.34149 0.86556 0.78646 0.78290 0.83895 1.20128 1.21401 1.20330 1.22619 0.95482 0.98300 0.93834 1.22104 0.95960 0.93334 0.84053 0.87462 1.86659 1.74215 1.34549 1.38904 1.21881 0.82756 0.98472 0.98829 1.43701 1.11650 1.64514 1.17593 1.17774 0.91549 1.02220 0.92006 1.23519 0.99477 1.01789 0.93289 1.77150 0.93426 1.22437 1.17437 1.48017 1.10825 1.45859 1.12092 1.21708 0.80072 0.98504 1.02671 1.21655 0.96807 1.06562 0.93560 0.96973 0.93877 0.90941 0.95173 0.99293 0.92911 0.91931 0.94729 0.79046 0.93009 0.92294 0.76126 0.80457 0.91260 0.89798 0.89720 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.31 60.07 0.56 1.35 16 2 N -0.53 -11.27 4.59 -244.37 -1.12 -12.39 16 3 C 0.19 4.99 4.55 -4.98 -0.02 4.97 16 4 C -0.50 -14.29 8.58 -34.44 -0.30 -14.59 16 5 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.46 4.65 -3.82 -0.02 0.44 16 13 C 0.11 1.63 3.13 -26.74 -0.08 1.54 16 14 H 0.11 1.99 6.73 -51.93 -0.35 1.64 16 15 O -0.54 -8.53 12.98 -35.23 -0.46 -8.99 16 16 C 0.11 1.32 5.30 -4.04 -0.02 1.30 16 17 N -0.74 -9.28 5.69 -58.80 -0.33 -9.62 16 18 C 0.07 0.92 6.96 -83.90 -0.58 0.34 16 19 C 0.01 0.10 11.34 -17.22 -0.20 -0.10 16 20 N -0.28 -3.76 12.57 30.70 0.39 -3.37 16 21 N -0.38 -4.27 4.04 -67.79 -0.27 -4.55 16 22 C 0.11 0.74 11.48 59.85 0.69 1.43 16 23 C -0.04 -0.44 11.57 -16.62 -0.19 -0.63 16 24 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 25 H 0.04 0.68 7.85 -51.92 -0.41 0.27 16 26 H 0.07 1.48 7.01 -51.93 -0.36 1.12 16 27 H 0.03 0.83 6.60 -51.93 -0.34 0.49 16 28 H -0.01 -0.30 8.07 -51.93 -0.42 -0.72 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 31 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 32 H 0.36 4.42 9.05 45.56 0.41 4.84 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 5.16 8.48 -40.82 -0.35 4.81 16 36 H 0.18 1.88 7.90 -52.49 -0.41 1.47 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -33.56 336.03 -6.80 -40.36 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.51 Total: 5.30 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.26 Total: -2.50 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.61 Total: -56.06 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.46 Total: -8.99 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.56 -6.80 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571039633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.650 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds