Wall clock time and date at job start Mon Mar 30 2020 00:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47246 * 59.99650 * 8 6 4 10 10 H 1.48493 * 109.47418 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47006 * 300.00030 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.40794 * 120.00248 * 179.97438 * 17 16 13 19 19 C 1.40222 * 126.07065 * 0.02562 * 18 17 16 20 20 N 1.30861 * 108.36675 * 179.97438 * 19 18 17 21 21 N 1.40074 * 108.36053 * 359.97438 * 20 19 18 22 22 C 1.46500 * 126.07237 * 180.02562 * 21 20 19 23 23 C 1.35707 * 126.06542 * 179.71491 * 18 17 16 24 24 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 25 25 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 26 26 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 27 27 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 28 28 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 29 29 H 0.96993 * 120.00483 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 31 31 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 32 32 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 33 33 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 34 34 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 35 35 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 36 36 H 1.07998 * 125.81300 * 359.96778 * 19 18 17 37 37 H 1.09004 * 109.46639 * 89.97494 * 22 21 20 38 38 H 1.08997 * 109.47190 * 209.97373 * 22 21 20 39 39 H 1.09001 * 109.47093 * 329.97865 * 22 21 20 40 40 H 1.08002 * 126.22469 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 2.7137 4.0012 0.6158 8 14 1.5839 4.1864 3.1387 9 1 2.1756 3.4286 4.2704 10 1 2.1159 5.5728 3.1386 11 1 0.1068 4.2236 3.2865 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1356 -3.0052 -2.7641 19 6 5.6696 -3.4059 -4.0244 20 7 6.6370 -4.0359 -4.6406 21 7 7.7552 -4.0601 -3.7974 22 6 9.0526 -4.6684 -4.1024 23 6 7.4243 -3.4143 -2.6474 24 1 -0.3633 0.5899 -0.8415 25 1 -0.3634 -1.0238 -0.0902 26 1 -0.3633 0.4336 0.9316 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 2.9882 4.9173 0.7778 30 1 1.3932 -1.6631 -1.2814 31 1 1.9552 -0.1531 -2.0381 32 1 2.9843 -2.8273 0.2042 33 1 3.4166 -2.8115 -2.2453 34 1 3.9751 -1.2717 -2.9419 35 1 5.8112 -2.0650 -0.9476 36 1 4.6807 -3.2254 -4.4193 37 1 9.6965 -3.9302 -4.5805 38 1 9.5182 -5.0132 -3.1792 39 1 8.9082 -5.5143 -4.7745 40 1 8.0693 -3.2567 -1.7956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571039633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:51 Heat of formation + Delta-G solvation = 14.782919 kcal Electronic energy + Delta-G solvation = -20073.290448 eV Core-core repulsion = 16924.094644 eV Total energy + Delta-G solvation = -3149.195804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88404 -39.49675 -37.34949 -35.80540 -34.59327 -33.51955 -31.61508 -29.88291 -29.20170 -27.41620 -26.45929 -25.21093 -23.29461 -22.02466 -21.58347 -21.20402 -18.59610 -18.09461 -17.54514 -16.97780 -16.56096 -16.44878 -16.19489 -15.87124 -15.29859 -15.17423 -15.12818 -14.81858 -14.23499 -13.98388 -13.80418 -13.51668 -13.28834 -13.20183 -13.05234 -12.89660 -12.56430 -12.49919 -12.31964 -12.14479 -11.69949 -11.52223 -11.32973 -10.94172 -10.78252 -10.58984 -10.22699 -8.93211 -8.19308 -7.93179 -6.28656 0.98183 1.40880 1.44361 1.52096 1.72061 2.05839 2.41150 2.68631 3.13151 3.34019 3.70225 3.89269 3.94689 4.09119 4.16371 4.35441 4.38166 4.50865 4.51821 4.61937 4.66057 4.74006 4.75940 4.79858 4.82171 4.88898 5.10249 5.14627 5.26023 5.32739 5.48537 5.66272 6.07911 6.20236 6.35907 6.52282 6.67782 6.75801 6.87310 7.02377 7.12675 7.40746 8.91570 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.003271 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.899283 B = 8557.772833 C = 9034.303259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.067 0.933 15 O -0.556 6.556 16 C 0.121 3.879 17 N -0.740 5.740 18 C 0.049 3.951 19 C -0.004 4.004 20 N -0.311 5.311 21 N -0.380 5.380 22 C 0.101 3.899 23 C -0.034 4.034 24 H 0.007 0.993 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.005 0.995 28 H -0.040 1.040 29 H 0.264 0.736 30 H 0.101 0.899 31 H 0.031 0.969 32 H 0.382 0.618 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.401 0.599 36 H 0.190 0.810 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 -17.612 -7.702 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.103 4.103 13 C 0.058 3.942 14 H 0.085 0.915 15 O -0.362 6.362 16 C -0.005 4.005 17 N -0.378 5.378 18 C -0.058 4.058 19 C -0.191 4.191 20 N -0.135 5.135 21 N -0.168 5.168 22 C -0.039 4.039 23 C -0.182 4.182 24 H 0.026 0.974 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.023 0.977 28 H -0.023 1.023 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.230 0.770 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.235 0.765 36 H 0.207 0.793 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.579 -17.857 -8.274 21.470 hybrid contribution -0.812 1.530 0.633 1.844 sum 7.768 -16.327 -7.641 19.629 Atomic orbital electron populations 1.22220 0.87394 1.00980 1.00015 1.61921 1.07935 1.15066 1.41702 1.19401 0.93788 0.83920 0.94656 1.21457 1.34684 0.97440 1.02521 0.92120 1.25909 0.95091 0.98124 1.00650 1.70073 1.39415 1.11884 1.36227 0.85461 0.78863 0.77152 0.79310 1.19472 1.20833 1.19148 1.22760 0.96642 0.98886 0.91971 1.21799 0.94758 0.92491 0.85193 0.91512 1.86617 1.74815 1.35537 1.39247 1.21689 0.83065 0.98843 0.96902 1.43630 1.11682 1.64929 1.17599 1.17972 0.92329 1.03323 0.92217 1.23775 1.00096 1.01783 0.93408 1.77097 0.94395 1.23514 1.18540 1.48454 1.11506 1.45238 1.11630 1.22079 0.78451 0.98903 1.04424 1.22129 0.96734 1.05241 0.94084 0.97404 0.89720 0.92828 0.97710 1.02290 0.92748 0.88085 0.95094 0.76995 0.90753 0.92485 0.76456 0.79280 0.90157 0.87173 0.89116 0.78989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.31 127.69 1.19 2.75 16 2 N -0.54 -22.90 4.59 -927.05 -4.25 -27.15 16 3 C 0.21 11.19 4.55 85.56 0.39 11.58 16 4 C -0.52 -30.16 8.58 25.60 0.22 -29.94 16 5 H 0.06 3.44 7.10 -2.91 -0.02 3.42 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 8 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.03 0.85 4.65 86.30 0.40 1.25 16 13 C 0.12 3.60 3.13 30.59 0.10 3.70 16 14 H 0.07 2.60 6.73 -2.39 -0.02 2.58 16 15 O -0.56 -17.00 12.98 -148.98 -1.93 -18.94 16 16 C 0.12 2.87 5.30 86.38 0.46 3.32 16 17 N -0.74 -18.10 5.69 -339.94 -1.94 -20.04 16 18 C 0.05 1.20 6.96 37.60 0.26 1.46 16 19 C 0.00 -0.09 11.34 85.32 0.97 0.88 16 20 N -0.31 -8.05 12.57 -56.78 -0.71 -8.76 16 21 N -0.38 -7.97 4.04 -368.37 -1.49 -9.46 16 22 C 0.10 1.13 11.48 127.77 1.47 2.60 16 23 C -0.03 -0.71 11.57 83.46 0.97 0.25 16 24 H 0.01 0.28 8.08 -2.39 -0.02 0.26 16 25 H 0.08 2.43 7.85 -2.38 -0.02 2.41 16 26 H 0.05 2.17 7.01 -2.39 -0.02 2.15 16 27 H 0.00 0.28 6.60 -2.39 -0.02 0.27 16 28 H -0.04 -2.36 8.07 -2.39 -0.02 -2.38 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.10 2.48 7.75 -2.39 -0.02 2.46 16 31 H 0.03 1.03 8.00 -2.38 -0.02 1.01 16 32 H 0.38 8.40 9.05 -74.05 -0.67 7.73 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.40 10.11 8.48 -92.71 -0.79 9.33 16 36 H 0.19 3.85 7.90 -2.91 -0.02 3.82 16 37 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.19 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -73.59 336.03 -1.55 -75.15 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.41 Total: 20.66 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 6.88 Total: -1.68 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -8.11 Total: -122.20 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.93 Total: -18.94 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.59 -1.55 -75.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571039633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.929 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds