Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99769 * 2 1 4 4 H 1.48497 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46929 * 300.00118 * 3 2 1 6 6 H 1.48497 * 109.46807 * 59.99828 * 3 2 1 7 7 C 1.37875 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00306 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99747 * 179.97438 * 10 9 7 12 12 C 1.53124 * 109.52439 * 204.99950 * 11 10 9 13 13 C 1.53037 * 109.28148 * 182.44186 * 12 11 10 14 14 N 1.46844 * 109.52152 * 59.17731 * 13 12 11 15 15 C 1.46906 * 110.99887 * 174.16043 * 14 13 12 16 16 H 1.08996 * 110.43340 * 56.08963 * 15 14 13 17 17 C 1.54261 * 110.48447 * 293.54799 * 15 14 13 18 18 C 1.53878 * 106.59730 * 217.71150 * 17 15 14 19 19 C 1.54271 * 106.59991 * 359.97438 * 18 17 15 20 20 C 1.54892 * 110.48502 * 178.77052 * 15 14 13 21 21 H 1.09002 * 110.75542 * 38.30889 * 20 15 14 22 22 O 1.42902 * 110.75592 * 274.93373 * 20 15 14 23 23 C 1.46850 * 111.19991 * 298.25708 * 14 13 12 24 24 C 1.53032 * 109.52098 * 61.74469 * 23 14 13 25 25 H 0.97000 * 120.00441 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47089 * 60.00013 * 9 7 2 27 27 H 1.09004 * 109.46850 * 300.00165 * 9 7 2 28 28 H 1.00901 * 110.99972 * 303.95075 * 10 9 7 29 29 H 1.09001 * 109.57799 * 325.15766 * 11 10 9 30 30 H 1.08997 * 109.50392 * 62.49608 * 12 11 10 31 31 H 1.09000 * 109.49712 * 302.38243 * 12 11 10 32 32 H 1.08995 * 109.46089 * 299.16330 * 13 12 11 33 33 H 1.09000 * 109.45256 * 179.18504 * 13 12 11 34 34 H 1.08999 * 110.03759 * 336.99335 * 17 15 14 35 35 H 1.09000 * 110.03630 * 98.42629 * 17 15 14 36 36 H 1.09001 * 110.03556 * 119.28361 * 18 17 15 37 37 H 1.09004 * 110.03136 * 240.66924 * 18 17 15 38 38 H 1.08994 * 110.48785 * 142.29053 * 19 18 17 39 39 H 1.09001 * 110.48639 * 264.80745 * 19 18 17 40 40 H 0.96696 * 113.99525 * 179.97438 * 22 20 15 41 41 H 1.09005 * 109.46314 * 181.76064 * 23 14 13 42 42 H 1.08998 * 109.46244 * 301.72632 * 23 14 13 43 43 H 1.09004 * 109.50441 * 180.87586 * 24 23 14 44 44 H 1.08999 * 109.50499 * 60.76414 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0018 11 6 1.5055 -4.9070 0.0024 12 6 2.4111 -5.9799 0.6135 13 6 1.7003 -7.3339 0.5559 14 7 1.3906 -7.6665 -0.8405 15 6 0.8325 -9.0212 -0.9477 16 1 -0.0476 -9.1215 -0.3126 17 6 1.8944 -10.0741 -0.5690 18 6 1.6898 -11.2664 -1.5199 19 6 0.5102 -10.8967 -2.4428 20 6 0.4818 -9.3480 -2.4205 21 1 1.2321 -8.9377 -3.0965 22 8 -0.8203 -8.8608 -2.7511 23 6 0.4840 -6.6754 -1.4340 24 6 1.1586 -5.3017 -1.4358 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8412 -3.5489 -0.7792 29 1 0.5902 -4.8258 0.5887 30 1 2.6269 -5.7260 1.6513 31 1 3.3427 -6.0337 0.0502 32 1 0.7756 -7.2834 1.1308 33 1 2.3484 -8.1024 0.9771 34 1 2.8942 -9.6599 -0.6995 35 1 1.7534 -10.3919 0.4641 36 1 2.5901 -11.4308 -2.1119 37 1 1.4502 -12.1631 -0.9482 38 1 0.6891 -11.2601 -3.4547 39 1 -0.4223 -11.3036 -2.0516 40 1 -1.0873 -9.0399 -3.6631 41 1 0.2486 -6.9657 -2.4579 42 1 -0.4349 -6.6280 -0.8497 43 1 0.4795 -4.5633 -1.8621 44 1 2.0705 -5.3449 -2.0313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579943211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -62.528051 kcal Electronic energy + Delta-G solvation = -21226.753599 eV Core-core repulsion = 18177.745683 eV Total energy + Delta-G solvation = -3049.007916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84826 -37.83541 -35.56537 -34.67876 -32.64486 -30.69860 -30.42989 -27.93671 -27.24553 -25.65595 -22.98197 -22.62129 -21.18741 -20.59335 -20.00322 -19.52840 -17.70203 -16.67964 -16.21831 -15.30640 -14.81369 -14.68696 -14.52996 -14.18000 -13.94914 -13.73347 -13.35985 -13.27271 -12.65143 -12.54749 -12.22635 -12.09066 -11.95868 -11.61959 -11.44550 -11.32565 -10.93054 -10.87589 -10.80618 -10.75223 -10.61449 -10.45642 -10.21840 -10.14034 -9.98042 -9.67203 -9.08772 -8.44883 -8.22402 -7.16904 -5.99447 -4.01094 3.33304 3.40346 3.45832 3.79062 4.01376 4.27816 4.46259 4.56806 4.73452 5.07794 5.09842 5.16171 5.18341 5.21311 5.32038 5.35700 5.37313 5.52494 5.56275 5.59410 5.66407 5.73322 5.77164 5.85416 5.91865 5.96469 6.01625 6.06606 6.17933 6.23048 6.36427 6.46087 6.65975 6.77434 7.22427 7.23877 7.34237 7.46100 7.50630 7.84187 8.18561 8.47978 8.69392 9.09146 9.63747 11.11658 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042762 B = 0.003417 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.632988 B = 8192.080639 C = 8579.070411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.086 3.914 12 C -0.101 4.101 13 C 0.057 3.943 14 N -0.530 5.530 15 C 0.087 3.913 16 H 0.052 0.948 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.156 4.156 20 C 0.102 3.898 21 H 0.074 0.926 22 O -0.561 6.561 23 C 0.064 3.936 24 C -0.144 4.144 25 H 0.260 0.740 26 H -0.013 1.013 27 H 0.025 0.975 28 H 0.329 0.671 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.376 0.624 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.066 0.934 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -23.156 -4.855 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.025 4.025 12 C -0.140 4.140 13 C -0.071 4.071 14 N -0.255 5.255 15 C -0.022 4.022 16 H 0.069 0.931 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.194 4.194 20 C 0.043 3.957 21 H 0.092 0.908 22 O -0.367 6.367 23 C -0.064 4.064 24 C -0.184 4.184 25 H 0.070 0.930 26 H 0.004 0.996 27 H 0.043 0.957 28 H 0.146 0.854 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.223 0.777 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.832 -22.774 -3.777 23.158 hybrid contribution -0.841 0.690 -1.037 1.503 sum 0.991 -22.085 -4.815 22.625 Atomic orbital electron populations 1.69977 1.06076 1.26594 1.51176 1.24998 0.94868 0.99358 0.95442 0.86439 0.80093 0.83414 0.77456 1.19646 1.21132 1.21040 1.21252 0.93551 0.90326 1.49945 0.91956 1.19565 0.90655 0.87433 0.95608 1.60731 1.20762 1.01048 1.48842 1.21555 0.96331 0.90727 0.93860 1.21557 0.98914 0.92084 1.01403 1.22118 0.99003 0.98050 0.87972 1.62116 1.44456 1.00886 1.18071 1.22390 0.95773 0.89377 0.94620 0.93056 1.22142 0.99943 0.94313 0.99062 1.21991 0.98156 0.98064 0.97515 1.23000 0.99540 0.96682 1.00167 1.22849 0.84660 0.91852 0.96332 0.90785 1.86568 1.33847 1.81815 1.34435 1.22060 0.93007 0.91448 0.99874 1.22360 1.01065 0.95546 0.99398 0.93029 0.99566 0.95678 0.85437 0.91728 0.91204 0.91501 0.95228 0.91068 0.90073 0.91636 0.91477 0.91682 0.91437 0.90831 0.77692 0.90227 0.95191 0.91542 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.22 5.24 -4.98 -0.03 5.20 16 10 N -0.69 -15.14 6.24 -107.86 -0.67 -15.82 16 11 C 0.09 1.60 2.53 -67.59 -0.17 1.43 16 12 C -0.10 -1.57 5.70 -26.65 -0.15 -1.72 16 13 C 0.06 0.76 5.34 -3.84 -0.02 0.74 16 14 N -0.53 -7.02 4.48 -224.71 -1.01 -8.03 16 15 C 0.09 0.99 2.34 -66.05 -0.15 0.83 16 16 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 17 C -0.12 -1.06 5.34 -25.61 -0.14 -1.20 16 18 C -0.12 -0.89 6.80 -25.61 -0.17 -1.06 16 19 C -0.16 -1.19 6.55 -25.05 -0.16 -1.36 16 20 C 0.10 1.00 2.91 -24.72 -0.07 0.93 16 21 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 22 O -0.56 -5.80 11.66 -35.23 -0.41 -6.21 16 23 C 0.06 0.95 4.87 -3.83 -0.02 0.94 16 24 C -0.14 -2.43 5.35 -26.65 -0.14 -2.57 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H -0.01 -0.38 7.51 -51.93 -0.39 -0.77 16 27 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 28 H 0.33 7.02 8.44 -39.29 -0.33 6.68 16 29 H 0.06 1.31 7.80 -51.93 -0.41 0.90 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.83 7.17 -51.93 -0.37 0.45 16 34 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.38 2.28 9.12 45.56 0.42 2.70 16 41 H 0.08 1.13 5.79 -51.93 -0.30 0.83 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 1.23 7.55 -51.93 -0.39 0.84 16 44 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -31.34 337.52 -10.17 -41.50 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.23 Total: 4.57 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.65 Total: -11.52 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.94 Total: -50.47 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.41 Total: -6.21 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.34 -10.17 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579943211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.024 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds